# List of top-scoring protein chains for t2k-100-30-dssp_ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1euhA 475 9.11e-01 1euhA c.82.1.1 35369 1qi6A 475 1.29e+00 1euhA c.82.1.1 35373 1nsf 273 1.53e+00 1d2nA c.37.1.13 32429 1d2nA 272 1.69e+00 1d2nA c.37.1.13 32428 1a4mA 349 1.70e+00 1a4mA c.1.9.1 29014 1dmmA 131 2.42e+00 1opy d.17.4.3 38114 1h6pA 203 2.48e+00 a.146.1.1 60690 1jpnA 296 2.56e+00 a.24.13.1 67039 c.37.1.10 67040 1j8wB 273 2.70e+00 c.68.1.2 66441 1fgxA 288 2.79e+00 1fgxA c.68.1.2 34508 1aisA 182 2.83e+00 1ytbA d.129.1.1 41288 d.129.1.1 41289 1a26 361 2.93e+00 1a26 a.41.1.1 17412 d.166.1.2 42274 1bdg 451 3.00e+00 1qhaA c.55.1.3 33461 c.55.1.3 33462 1efyA 350 3.06e+00 1a26 a.41.1.1 17413 d.166.1.2 42275 1ee2A 373 3.29e+00 2ohxA b.35.1.2 24663 c.2.1.1 29679 1ea2A 131 3.30e+00 d.17.4.3 64860 8adh 374 3.44e+00 2ohxA b.35.1.2 24690 c.2.1.1 29706 1add 349 3.91e+00 1a4mA c.1.9.1 29020 1agnA 373 3.91e+00 2ohxA b.35.1.2 24737 c.2.1.1 29753 1heuA 374 3.98e+00 2ohxA b.35.1.2 60979 c.2.1.1 60980 1ng1 294 4.00e+00 1ng1 a.24.13.1 16961 c.37.1.10 32272 1opy 131 4.09e+00 1opy d.17.4.3 38113 1hetA 374 4.32e+00 2ohxA b.35.1.2 60975 c.2.1.1 60976 1rpjA 288 4.33e+00 2dri c.93.1.1 35656 2ohxA 374 4.66e+00 2ohxA b.35.1.2 24669 c.2.1.1 29685 1dusA 194 5.23e+00 1dusA c.66.1.4 34182 2ae2A 260 5.47e+00 1bdb c.2.1.2 29945 1pkp 150 5.53e+00 1pkp d.14.1.1 37551 d.50.1.2 38787 1ft1A 377 5.84e+00 1ft1A a.118.6.1 19186 1fshA 105 5.86e+00 1fshA a.4.5.31 60006 1booA 323 6.20e+00 1booA c.66.1.11 34248 1jx4A 352 6.28e+00 e.8.1.5 67405 1geqA 248 6.33e+00 2tysA c.1.2.4 28589 1bq3B 246 6.54e+00 1qhfA c.60.1.1 33979 1trkA 680 6.56e+00 1trkA c.36.1.2 31803 c.36.1.2 31804 c.48.1.1 33090 1qbqA 333 6.74e+00 1ft1A a.118.6.1 19187 1l1lA 739 6.79e+00 1ekgA 127 7.28e+00 1dlxA d.82.2.1 40021 1mla 309 7.64e+00 1mla c.19.1.1 31031 d.58.23.1 39383 1pdz 434 7.74e+00 4enl c.1.11.1 29215 d.54.1.1 38859 1bi5A 389 7.75e+00 1bi5A c.95.1.2 35985 c.95.1.2 35986 1mkp 144 8.18e+00 1vhrA c.45.1.1 32654 1hgxA 183 8.25e+00 1tc1A c.61.1.1 34027 1qd9A 124 8.29e+00 1qu9A d.79.1.1 39758 1i86A 389 8.59e+00 c.95.1.2 66068 c.95.1.2 66069 2ng1 293 8.77e+00 1ng1 a.24.13.1 16962 c.37.1.10 32273 1f75A 249 9.00e+00 1f75A c.101.1.1 59662 1gpuA 680 9.04e+00 c.36.1.2 65454 c.36.1.2 65455 c.48.1.1 65456 1bg4 302 9.72e+00 1taxA c.1.8.3 28806 1jlnA 297 9.74e+00 1pty c.45.1.2 63172 1i88A 389 1.01e+01 c.95.1.2 66070 c.95.1.2 66071 1al3 324 1.06e+01 1al3 c.94.1.1 35835 1jcrA 377 1.12e+01 a.118.6.1 66506 4rnpA 883 1.14e+01 1cezA e.8.1.3 43113 2hdhA 293 1.16e+01 2hdhA a.100.1.3 18795 c.2.1.6 30199 1eypA 222 1.16e+01 1eypA d.36.1.1 38536 1agi 125 1.18e+01 7rsa d.5.1.1 37303 1gajA 257 1.18e+01 1gajA c.37.1.12 60416 1hufA 140 1.19e+01 1hufA d.195.1.1 61272 1f0yA 302 1.20e+01 2hdhA a.100.1.3 18793 c.2.1.6 30197 1g291 372 1.21e+01 1g291 1f9mA 112 1.24e+01 1erv c.47.1.1 32736 1faaA 124 1.26e+01 1erv c.47.1.1 32738 1d2mA 665 1.30e+01 1d2mA c.37.1.13 32417 c.37.1.13 32418 1mat 264 1.32e+01 1c24A d.127.1.1 41152 1d8dA 377 1.34e+01 1ft1A a.118.6.1 19185 1c4oA 664 1.37e+01 1d2mA c.37.1.13 32415 c.37.1.13 32416 1jg8A 347 1.37e+01 1jg8A c.67.1.1 62946 1iibA 106 1.42e+01 1iibA c.44.2.1 32648 1f2dA 341 1.42e+01 1f2dA c.79.1.1 35298 1ikzA 142 1.43e+01 1jcqA 382 1.45e+01 a.118.6.1 66504 1ld8A 382 1.45e+01 1tkaA 678 1.47e+01 1trkA c.36.1.2 31815 c.36.1.2 31816 c.48.1.1 33096 2ezl 99 1.48e+01 2ezk a.4.1.2 16026 2ezk 99 1.48e+01 2ezk a.4.1.2 16027 2gbp 309 1.50e+01 1gca c.93.1.1 35657 1cmiA 85 1.50e+01 1cmiA d.39.1.1 38551 1jd1A 129 1.51e+01 1qu9A d.79.1.1 62890 1cus 200 1.60e+01 1cex c.23.9.1 31287 1pjr 724 1.61e+01 1pjr c.37.1.13 32391 c.37.1.13 32392 1cex 214 1.61e+01 1cex c.23.9.1 31285 1zfjA 491 1.83e+01 1ak5 c.1.5.1 28638 d.37.1.1 38540 d.37.1.1 38541 1aroP 883 1.83e+01 1cezA e.8.1.3 43112 1hv8A 367 1.87e+01 1hv8A c.37.1.13 32405 c.37.1.13 32406 1jepA 222 1.87e+01 d.36.1.1 66612 1eyqA 222 1.87e+01 1eypA d.36.1.1 38534 1fohA 664 1.90e+01 1fohA c.3.1.2 30381 c.47.1.10 33078 d.16.1.2 37900 1ltsD 103 1.93e+01 3chbD b.40.2.1 24900 1djrD 103 1.95e+01 3chbD b.40.2.1 24865 1qhfA 240 1.98e+01 1qhfA c.60.1.1 33960 1g60A 260 2.01e+01 1i9sA 210 2.01e+01 1i9sA c.45.1.1 62099 1jmrA 249 2.03e+01 1k77A 260 2.04e+01 1rlaA 323 2.04e+01 1d3vA c.42.1.1 32561 1d9tA 289 2.15e+01 1deaA c.35.1.1 31767 1j5eC 239 2.19e+01 1qu6A 179 2.20e+01 1qu6A d.50.1.1 38784 d.50.1.1 38785 1gca 309 2.24e+01 1gca c.93.1.1 35659 1ad2 228 2.24e+01 1ad2 e.24.1.1 43353 1g6hA 257 2.25e+01 1gajA c.37.1.12 60318 2tbd 134 2.26e+01 2tbd d.89.1.1 40241 1fjgC 239 2.27e+01 1fjfC d.52.3.1 38831 d.53.1.1 38839 1d3vA 323 2.36e+01 1d3vA c.42.1.1 32559 1b4aA 149 2.36e+01 1b4aA a.4.5.3 16088 d.74.2.1 39721 1ecpA 238 2.45e+01 1ecpA c.56.2.1 33775 1sbp 310 2.45e+01 1sbp c.94.1.1 35760 1c24A 263 2.45e+01 1c24A d.127.1.1 41148 1jb0D 138 2.52e+01 1jb0D d.187.1.1 62823 1g2yA 32 2.54e+01 a.34.1.1 17003 1efiD 103 2.56e+01 3chbD b.40.2.1 24870 1ucyE 109 2.60e+01 1ucyE 1jr2A 286 2.63e+01 c.113.1.1 67111 1h8eD 482 2.63e+01 1skyE a.69.1.1 60747 b.49.1.1 60748 c.37.1.11 60749 1rypE 242 2.63e+01 1rypE d.153.1.4 41936 1tplA 426 2.72e+01 1ax4A c.67.1.2 34387 8kme2 259 2.74e+01 1ucyE 1jeoA 180 2.84e+01 c.80.1.3 66611 1ukz 203 2.85e+01 1zin c.37.1.1 31840 1lgyA 269 2.86e+01 3tgl c.69.1.17 34758 1tc1A 220 2.87e+01 1tc1A c.61.1.1 34083 1fcjA 322 2.89e+01 1oasA c.79.1.1 35289 1e0bA 68 2.90e+01 1e0bA d.9.2.2 37476 6pfkA 319 2.95e+01 3pfk c.89.1.1 35583 1bmfA 510 3.01e+01 1skyB a.69.1.1 18281 b.49.1.1 26446 c.37.1.11 32326 1pymA 295 3.03e+01 1pymA c.1.12.4 29308 1k9sA 237 3.04e+01 c.56.2.1 68359 1ja9A 274 3.05e+01 c.2.1.2 62817 1pyiA 96 3.10e+01 1pyiA g.38.1.1 45079 h.1.3.1 45512 1hyeA 313 3.13e+01 2cmd c.2.1.5 61400 d.162.1.1 61401 1oasA 322 3.17e+01 1oasA c.79.1.1 35293 1tib 269 3.20e+01 3tgl c.69.1.17 34738 1fsiA 189 3.21e+01 1fsiA d.61.1.1 39536 1aw5 326 3.22e+01 1b4kA c.1.10.3 29181 1e79D 482 3.22e+01 1skyE a.69.1.1 18272 b.49.1.1 26437 c.37.1.11 32317 3chbD 104 3.37e+01 3chbD b.40.2.1 24970 1g55A 343 3.41e+01 1g55A c.66.1.10 34247 2dri 271 3.48e+01 2dri c.93.1.1 35637 1dkuA 317 3.51e+01 1dkuA c.61.1.2 34118 c.61.1.2 34119 1h7nA 342 3.51e+01 1b4kA c.1.10.3 60726 1tbd 134 3.53e+01 2tbd d.89.1.1 40240 1eyzA 392 3.55e+01 1ez1A b.84.2.1 28246 c.30.1.1 31653 d.142.1.2 41498 1hf2A 210 3.57e+01 1hf2A b.80.3.1 60992 c.102.1.1 60993 1eyrA 228 3.57e+01 1eyrA c.68.1.3 34514 1cseI 71 3.59e+01 1egpA d.40.1.1 38559 1gh8A 89 3.60e+01 1gh8A d.58.12.1 39309 4pfk 319 3.61e+01 3pfk c.89.1.1 35582 1hyqA 263 3.66e+01 1hyqA c.37.1.10 61412 1jh6A 189 3.75e+01 d.61.1.1 66707 1hnjA 317 3.80e+01 1hn9A c.95.1.1 35969 c.95.1.1 35970 1thm 279 3.81e+01 1gci c.41.1.1 32544 3pfk 319 3.91e+01 3pfk c.89.1.1 35581 1fjgT 106 3.92e+01 1fjfT a.7.6.1 16338 1f9zA 135 3.94e+01 1qipA d.32.1.1 38484