PFRMAT SS
TARGET T0193
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-alpha-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	   11 (1 ABCDEFGHIST )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0193.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 18
METHOD
MODEL 1
M B 0.249
K S 0.326
V B 0.452
P B 0.526
E H 0.500
A H 0.791
A H 0.646
I H 0.584
S H 0.624
R S 0.380
L H 0.545
I H 0.802
T H 0.860
Y H 0.858
L H 0.903
R H 0.964
I H 0.942
L H 0.873
E H 0.923
E H 0.909
L H 0.843
E H 0.708
A H 0.707
Q B 0.676
G S 0.594
V B 0.531
H E 0.472
R E 0.305
T E 0.396
S B 0.522
S H 0.541
E H 0.849
Q H 0.867
L H 0.847
G H 0.792
E H 0.736
L H 0.563
A B 0.452
Q S 0.382
V B 0.456
T B 0.559
A I 0.576
F H 0.722
Q H 0.654
V H 0.769
R H 0.660
K H 0.629
D H 0.335
L I 0.425
S H 0.608
Y H 0.510
F H 0.291
G H 0.193
S H 0.522
Y B 0.451
G S 0.363
T B 0.252
R G 0.220
G S 0.186
V E 0.197
G C 0.212
Y B 0.322
T B 0.281
V H 0.674
P H 0.903
V H 0.937
L H 0.929
K H 0.901
R H 0.933
E H 0.892
L H 0.838
R H 0.886
H H 0.849
I H 0.650
L B 0.828
G T 0.381
L B 0.203
N I 0.183
R I 0.247
K E 0.185
W E 0.448
G E 0.214
L E 0.737
C E 0.871
I E 0.556
V G 0.315
G E 0.324
M S 0.530
G D 0.419
R A 0.228
L H 0.498
G H 0.723
S H 0.775
A H 0.789
L H 0.640
A H 0.595
D H 0.371
Y E 0.259
P H 0.188
G S 0.189
F H 0.168
G D 0.179
E H 0.204
S S 0.310
F E 0.473
E B 0.485
L A 0.751
R F 0.780
G E 0.577
F E 0.385
F E 0.515
D A 0.401
V B 0.254
D E 0.579
P I 0.659
E H 0.276
K S 0.288
V H 0.176
G S 0.293
R B 0.444
P E 0.248
V D 0.236
R F 0.294
G S 0.743
G B 0.632
V E 0.559
I A 0.385
E F 0.269
H A 0.315
V I 0.519
D H 0.788
L H 0.605
L H 0.702
P H 0.628
Q H 0.744
R H 0.443
V H 0.318
P H 0.383
G H 0.302
R S 0.439
I E 0.580
E E 0.385
I E 0.633
A E 0.763
L E 0.664
L E 0.370
T E 0.303
V B 0.437
P B 0.486
R H 0.632
E H 0.858
A H 0.857
A H 0.912
Q H 0.945
K H 0.963
A H 0.936
A H 0.936
D H 0.955
L H 0.975
L H 0.957
V H 0.838
A H 0.838
A B 0.602
G S 0.475
I E 0.359
K F 0.220
G E 0.250
I E 0.459
L E 0.326
N E 0.355
F S 0.340
A C 0.355
P E 0.317
V E 0.409
V E 0.396
L E 0.423
E A 0.278
V C 0.433
P B 0.427
K G 0.578
E S 0.393
V E 0.651
A E 0.686
V A 0.487
E F 0.305
N E 0.406
V E 0.319
D E 0.442
F H 0.458
L H 0.753
A H 0.835
G H 0.879
L H 0.896
T H 0.939
R H 0.959
L H 0.946
S H 0.921
F H 0.907
A H 0.824
I H 0.718
L H 0.303
N A 0.297
P H 0.330
K H 0.705
W H 0.698
R H 0.691
E H 0.654
E H 0.562
M H 0.276
M H 0.242
G S 0.188
END