PFRMAT SS
TARGET T0192
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-ebghtl-seeded.net
METHOD This is a 4-layer network, with
METHOD window units
METHOD 5 15
METHOD 7 15
METHOD 9 15
METHOD 13 6 (1 EBGHTL )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0192.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 291
METHOD
MODEL 1
M C 0.763
A C 0.697
K C 0.562
F E 0.738
V E 0.882
I E 0.893
R E 0.715
P E 0.579
A C 0.566
T C 0.660
A G 0.402
A G 0.422
D H 0.544
C H 0.907
S H 0.956
D H 0.971
I H 0.984
L H 0.988
R H 0.982
L H 0.974
I H 0.965
K H 0.943
E H 0.913
L H 0.847
A H 0.640
K H 0.648
Y H 0.626
E H 0.499
Y H 0.371
M H 0.405
E H 0.443
E H 0.453
Q H 0.497
V H 0.618
I H 0.651
L H 0.683
T H 0.723
E H 0.820
K H 0.853
D H 0.844
L H 0.853
L H 0.860
E H 0.857
D H 0.813
G H 0.763
F H 0.706
G H 0.526
E T 0.317
H T 0.444
P T 0.474
F T 0.451
Y T 0.345
H E 0.504
C E 0.808
L E 0.884
V E 0.870
A E 0.785
E E 0.619
V E 0.451
P C 0.388
K E 0.344
E E 0.311
H E 0.309
W H 0.310
T E 0.275
P T 0.392
E T 0.623
G T 0.787
H T 0.736
S E 0.598
I E 0.932
V E 0.979
G E 0.992
F E 0.996
A E 0.993
M E 0.991
Y E 0.977
Y E 0.954
F E 0.874
T E 0.578
Y T 0.402
D T 0.503
P T 0.610
W T 0.550
I T 0.543
G T 0.542
K C 0.501
L E 0.538
L E 0.699
Y E 0.865
L E 0.885
E E 0.875
D E 0.894
F E 0.864
F E 0.908
V E 0.741
M C 0.509
S G 0.496
D G 0.512
Y G 0.462
R T 0.320
G H 0.433
F C 0.432
G C 0.760
I H 0.708
G H 0.820
S H 0.976
E H 0.981
I H 0.989
L H 0.998
K H 0.997
N H 0.997
L H 0.997
S H 0.996
Q H 0.993
V H 0.993
A H 0.987
M H 0.972
R H 0.928
C H 0.680
R C 0.906
C C 0.836
S C 0.590
S E 0.945
M E 0.984
H E 0.989
F E 0.980
L E 0.943
V E 0.825
A E 0.588
E T 0.450
W T 0.558
N T 0.423
E H 0.610
P H 0.820
S H 0.962
I H 0.982
N H 0.986
F H 0.988
Y H 0.981
K H 0.972
R H 0.971
R H 0.904
G C 0.899
A C 0.667
S E 0.677
D E 0.677
L E 0.478
S E 0.370
S E 0.422
E T 0.378
E T 0.487
G T 0.589
W E 0.400
R E 0.545
L E 0.445
F T 0.362
K C 0.425
I C 0.553
D C 0.636
K H 0.876
E H 0.920
Y H 0.939
L H 0.944
L H 0.921
K H 0.912
M H 0.907
A H 0.814
T H 0.522
E C 0.664
E C 0.772
END