PFRMAT SS
TARGET T0192
AUTHOR 4069-6308-1312 
METHOD This file is the result of combining several RDB files, specifically
METHOD T0192.t2k.dssp-ebghstl.rdb  (weight 1.53986)
METHOD T0192.t2k.stride-ebghtl.rdb  (weight 1.24869)
METHOD T0192.t2k.str.rdb  (weight 1.53983)
METHOD T0192.t2k.alpha.rdb  (weight 0.659012)
METHOD These files were combined by translating their predictions into EHL
METHOD predictions with tables generated by compare-real, and then combining
METHOD those predictions with weights proportional to their mutual information
METHOD with the EHL alphabet.  The comments from the individual files follow.
METHOD
METHOD Comments from T0192.t2k.dssp-ebghstl.rdb
METHOD ============================================
METHOD TARGET T0192
METHOD Using neural net t2k-5740-IDaaHr-5-15-7-15-9-15-13-ebghstl-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	    7 (1 EBGHSTL )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0192.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 291
METHOD
METHOD ============================================
METHOD Comments from T0192.t2k.stride-ebghtl.rdb
METHOD ============================================
METHOD TARGET T0192
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-ebghtl-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	    6 (1 EBGHTL )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0192.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 291
METHOD
METHOD ============================================
METHOD Comments from T0192.t2k.str.rdb
METHOD ============================================
METHOD TARGET T0192
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-str-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	   13 (1 str )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0192.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 291
METHOD
METHOD ============================================
METHOD Comments from T0192.t2k.alpha.rdb
METHOD ============================================
METHOD TARGET T0192
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-alpha-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	   11 (1 ABCDEFGHIST )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0192.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 291
METHOD
METHOD ============================================
MODEL 1
M C 0.90
A C 0.80
K C 0.55
F E 0.75
V E 0.84
I E 0.77
R E 0.57
P C 0.60
A C 0.84
T C 0.90
A H 0.64
A H 0.65
D H 0.67
C H 0.91
S H 0.93
D H 0.94
I H 0.95
L H 0.96
R H 0.95
L H 0.95
I H 0.94
K H 0.92
E H 0.87
L H 0.80
A H 0.68
K H 0.66
Y H 0.61
E H 0.51
Y C 0.51
M C 0.54
E C 0.53
E C 0.52
Q C 0.50
V H 0.51
I H 0.60
L H 0.67
T H 0.69
E H 0.83
K H 0.87
D H 0.87
L H 0.87
L H 0.88
E H 0.86
D H 0.83
G H 0.77
F H 0.68
G H 0.52
E C 0.61
H C 0.77
P C 0.76
F C 0.73
Y C 0.60
H E 0.55
C E 0.80
L E 0.85
V E 0.83
A E 0.77
E E 0.62
V C 0.46
P C 0.52
K C 0.47
E E 0.43
H E 0.53
W E 0.58
T E 0.57
P C 0.42
E C 0.58
G C 0.86
H C 0.88
S E 0.62
I E 0.87
V E 0.86
G E 0.92
F E 0.93
A E 0.92
M E 0.92
Y E 0.89
Y E 0.86
F E 0.77
T E 0.49
Y C 0.65
D C 0.72
P C 0.73
W C 0.73
I C 0.75
G C 0.79
K C 0.74
L E 0.54
L E 0.70
Y E 0.83
L E 0.85
E E 0.79
D E 0.83
F E 0.84
F E 0.88
V E 0.81
M C 0.61
S H 0.68
D H 0.66
Y H 0.70
R C 0.57
G C 0.75
F C 0.74
G C 0.71
I H 0.61
G H 0.84
S H 0.95
E H 0.96
I H 0.96
L H 0.96
K H 0.96
N H 0.96
L H 0.96
S H 0.96
Q H 0.96
V H 0.96
A H 0.95
M H 0.94
R H 0.83
C C 0.72
R C 0.94
C C 0.89
S C 0.67
S E 0.86
M E 0.92
H E 0.93
F E 0.90
L E 0.84
V E 0.69
A C 0.56
E C 0.70
W C 0.79
N C 0.78
E H 0.68
P H 0.84
S H 0.93
I H 0.95
N H 0.95
F H 0.96
Y H 0.95
K H 0.93
R H 0.84
R C 0.52
G C 0.91
A C 0.77
S E 0.60
D E 0.67
L E 0.60
S E 0.51
S E 0.53
E E 0.51
E C 0.54
G C 0.62
W C 0.46
R C 0.43
L C 0.57
F C 0.70
K C 0.78
I C 0.80
D C 0.79
K H 0.88
E H 0.93
Y H 0.94
L H 0.94
L H 0.94
K H 0.92
M H 0.88
A H 0.77
T H 0.55
E C 0.63
E C 0.87
END