PFRMAT SS
TARGET T0192
AUTHOR 4069-6308-1312
METHOD Using neural net t2k-5740-IDaaHr-5-15-7-15-9-15-13-ebghstl-seeded.net
METHOD This is a 4-layer network, with
METHOD window units
METHOD 5 15
METHOD 7 15
METHOD 9 15
METHOD 13 7 (1 EBGHSTL )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0192.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 291
METHOD
MODEL 1
M C 0.999
A C 0.869
K C 0.399
F E 0.834
V E 0.898
I E 0.719
R C 0.443
P C 0.461
A C 0.704
T C 0.899
A G 0.502
A G 0.461
D H 0.473
C H 0.952
S H 0.963
D H 0.967
I H 0.988
L H 0.990
R H 0.983
L H 0.979
I H 0.975
K H 0.935
E H 0.872
L H 0.778
A H 0.629
K H 0.557
Y H 0.514
E H 0.427
Y H 0.351
M C 0.318
E H 0.305
E H 0.339
Q H 0.350
V H 0.399
I H 0.524
L H 0.598
T H 0.625
E H 0.810
K H 0.872
D H 0.900
L H 0.906
L H 0.914
E H 0.892
D H 0.852
G H 0.756
F H 0.629
G H 0.454
E H 0.279
H C 0.423
P C 0.341
F T 0.318
Y C 0.352
H E 0.516
C E 0.820
L E 0.894
V E 0.916
A E 0.870
E E 0.729
V E 0.539
P E 0.433
K E 0.402
E E 0.418
H E 0.583
W E 0.657
T E 0.580
P E 0.405
E E 0.258
G T 0.684
H T 0.686
S E 0.568
I E 0.834
V E 0.926
G E 0.981
F E 0.989
A E 0.993
M E 0.989
Y E 0.940
Y E 0.897
F E 0.746
T E 0.411
Y T 0.286
D C 0.284
P T 0.312
W T 0.357
I C 0.471
G C 0.438
K C 0.313
L E 0.391
L E 0.599
Y E 0.828
L E 0.860
E E 0.797
D E 0.807
F E 0.860
F E 0.912
V E 0.865
M C 0.543
S G 0.576
D G 0.596
Y G 0.751
R T 0.324
G T 0.721
F S 0.391
G C 0.435
I H 0.474
G H 0.811
S H 0.984
E H 0.993
I H 0.993
L H 0.995
K H 0.994
N H 0.993
L H 0.996
S H 0.996
Q H 0.993
V H 0.993
A H 0.992
M H 0.978
R H 0.853
C T 0.874
R T 0.971
C C 0.895
S C 0.493
S E 0.859
M E 0.968
H E 0.991
F E 0.982
L E 0.925
V E 0.679
A C 0.475
E C 0.323
W S 0.290
N C 0.549
E H 0.637
P H 0.812
S H 0.947
I H 0.990
N H 0.995
F H 0.995
Y H 0.995
K H 0.986
R H 0.942
R H 0.510
G T 0.875
A C 0.836
S E 0.481
D E 0.552
L E 0.476
S E 0.424
S E 0.469
E E 0.451
E E 0.294
G T 0.285
W E 0.291
R E 0.333
L C 0.292
F C 0.300
K C 0.351
I C 0.469
D C 0.641
K H 0.915
E H 0.969
Y H 0.980
L H 0.988
L H 0.978
K H 0.949
M H 0.882
A H 0.713
T H 0.493
E C 0.375
E C 0.995
END