# List of top-scoring protein chains for t2k-100-30-dssp_ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1qsmA 152 1.11e-20 1qsmA d.108.1.1 40808 1i1dA 161 1.26e-19 1i21A d.108.1.1 61526 1i12A 160 1.33e-19 1i21A d.108.1.1 61515 1i21A 159 1.93e-19 1i21A d.108.1.1 61549 1bo4A 168 5.37e-14 1bo4A d.108.1.1 40798 1bo4B 168 1.68e-13 1bo4A d.108.1.1 40799 1b87A 181 7.22e-13 1b87A d.108.1.1 40797 1cjwA 166 6.79e-12 1cjwA d.108.1.1 40818 1qstA 160 8.98e-11 1yghA d.108.1.1 40804 1yghA 164 1.24e-08 1yghA d.108.1.1 40802 1bob 320 5.01e-07 1bob d.108.1.1 40816 1nmtA 392 3.91e-05 1nmtA d.108.1.2 40823 d.108.1.2 40824 1fy7A 278 1.23e-04 1fy7A d.108.1.1 40817 1iicA 422 1.70e-03 1nmtA d.108.1.2 62422 d.108.1.2 62423 1ecfA 504 2.30e-01 1ecfB c.61.1.1 34053 d.153.1.1 41820 1ecfB 504 2.32e-01 1ecfB c.61.1.1 34054 d.153.1.1 41821 1cmiA 85 2.81e-01 1cmiA d.39.1.1 38551 1gt7A 274 4.08e-01 1afwA 393 4.79e-01 1afwA c.95.1.1 35900 c.95.1.1 35901 1pxtB 390 5.44e-01 1afwA c.95.1.1 35906 c.95.1.1 35907 1opr 213 7.89e-01 1opr c.61.1.1 34091 1dik 874 8.80e-01 1dik c.1.12.2 29304 c.8.1.1 30702 d.142.1.5 41572 1pot 325 9.82e-01 1pot c.94.1.1 35807 1lh0A 213 1.33e+00 1hd8A 363 1.44e+00 b.105.1.1 65803 e.3.1.1 65804 1drtA 324 1.67e+00 1drtA b.82.2.2 28130 1cvrA 435 1.74e+00 1cvrA b.1.1.5 21949 c.17.1.2 31006 1kblA 873 1.77e+00 c.1.12.2 68384 c.8.1.1 68385 d.142.1.5 68386 1dryA 324 1.90e+00 1drtA b.82.2.2 28128 1ds1A 324 1.95e+00 1drtA b.82.2.2 28127 1gsa 316 2.08e+00 1gsa c.30.1.3 31718 d.142.1.1 41477 1k9vF 201 2.79e+00 c.23.16.1 68365 1ju3A 583 2.99e+00 b.18.1.13 67300 c.69.1.21 67301 1g4uS 383 3.34e+00 1g4uS a.24.11.1 16643 c.45.1.2 32691 1cjbA 231 3.42e+00 1qk3A c.61.1.1 34079 1gox 370 3.78e+00 1gox c.1.4.1 28607 1fs0G 230 4.22e+00 1fs0G c.49.2.1 59999 1cr1A 296 4.49e+00 1cr1A c.37.1.11 32286 1cr0A 296 4.69e+00 1cr1A c.37.1.11 32287 1gpwB 201 4.80e+00 c.23.16.1 65461 1dmuA 299 4.86e+00 1dmuA c.52.1.4 33294 1j6zA 376 5.98e+00 1yagA c.55.1.1 62667 c.55.1.1 62668 1cg2A 393 6.10e+00 1cg2A c.56.5.4 33844 d.58.19.1 39360 1skyE 473 6.88e+00 1skyE a.69.1.1 18314 b.49.1.1 26479 c.37.1.11 32359 1epwA 1290 6.95e+00 b.29.1.6 24269 b.42.4.2 25614 d.92.1.7 40305 h.4.2.1 45785 1shdA 107 8.32e+00 1fmk d.93.1.1 40440 1j8mF 297 8.42e+00 1ng1 a.24.13.1 62742 c.37.1.10 62743 1g4wR 383 9.25e+00 1g4uS a.24.11.1 16644 c.45.1.2 32692 1ffkE 119 9.55e+00 1ffkE d.79.3.1 39812 1rypI 222 1.02e+01 d.153.1.4 41877 1stfI 98 1.06e+01 1stfI d.17.1.2 38006 1bdg 451 1.07e+01 1qhaA c.55.1.3 33461 c.55.1.3 33462 1fc6A 388 1.17e+01 1fc6A b.36.1.3 64738 c.14.1.2 64739 1edzA 320 1.19e+01 1ee9A c.2.1.7 30287 c.58.1.2 33935 1thm 279 1.20e+01 1gci c.41.1.1 32544 1feuA 206 1.21e+01 1feuA b.53.1.1 59801 1h75A 81 1.23e+01 1h75A c.47.1.1 60716 1a73A 163 1.33e+01 1a73A d.4.1.3 37145 1yaiA 151 1.34e+01 1yaiA b.1.8.1 22289 1eulA 994 1.35e+01 1eulA f.2.1.10 43726 1dxrH 258 1.38e+01 6prcH b.41.1.1 25456 f.2.1.2 43433 6prcH 258 1.38e+01 6prcH b.41.1.1 25457 f.2.1.2 43436 1h6zA 913 1.46e+01 1evxA 162 1.48e+01 1a73A d.4.1.3 37149 1fsgA 233 1.51e+01 1qk3A c.61.1.1 34029 1e79D 482 1.52e+01 1skyE a.69.1.1 18272 b.49.1.1 26437 c.37.1.11 32317 1ee9A 320 1.55e+01 1ee9A c.2.1.7 30288 c.58.1.2 33936 1gpl 432 1.69e+01 1gpl b.12.1.2 23645 c.69.1.19 34793 1flcA 432 1.70e+01 1flcA b.19.1.3 23837 c.23.10.2 31337 1gtxA 472 1.71e+01 1gtxA c.67.1.4 34464 1l3kA 196 1.71e+01 1dusA 194 1.77e+01 1dusA c.66.1.4 34182 1kafA 108 1.86e+01 d.199.1.1 68372 1qcsA 211 1.89e+01 1qcsA b.52.2.3 26927 d.31.1.1 38461 1cvjB 190 1.89e+01 1cvjB d.58.7.1 39193 d.58.7.1 39194 2btfA 375 1.91e+01 1yagA c.55.1.1 33429 c.55.1.1 33430 1bzyA 217 1.99e+01 1qk3A c.61.1.1 34071 1bouB 302 2.07e+01 1bouB c.56.6.1 33859 1jj2F 119 2.09e+01 1ffkE d.79.3.1 63091 1cvl 319 2.21e+01 1cvl c.69.1.18 34786 1aop 497 2.22e+01 2aop d.58.36.1 39501 d.58.36.1 39502 d.134.1.1 41425 d.134.1.1 41426 1jmtA 104 2.25e+01 d.58.7.3 63180 1b34B 118 2.29e+01 1b34B b.38.1.1 24797 1smd 496 2.34e+01 1smd b.71.1.1 27768 c.1.8.1 28755 1b8kA 119 2.37e+01 1bndA g.17.1.3 44795 2minB 522 2.47e+01 1qguB c.92.2.3 35610 1jflA 228 2.47e+01 1mxb 383 2.48e+01 1mxb d.130.1.1 41329 d.130.1.1 41330 d.130.1.1 41331 3minB 522 2.50e+01 1qguB c.92.2.3 35606 1a0i 348 2.54e+01 1a0i b.40.4.6 25363 d.142.2.1 41577 1isiA 265 2.57e+01 1h2rL 534 2.58e+01 1h2rL e.18.1.1 43298 1dgaA 375 2.60e+01 1yagA c.55.1.1 33441 c.55.1.1 33442 1g8yA 279 2.61e+01 1g8yA c.37.1.11 32302 1k9sA 237 2.61e+01 c.56.2.1 68359 1fl2A 310 2.66e+01 1hyuA c.3.1.5 59869 c.3.1.5 59870 1hfoA 113 2.72e+01 d.80.1.3 61006 1h2aL 567 2.77e+01 1h2rL e.18.1.1 43299 1jmmA 377 2.78e+01 2aop 497 2.86e+01 2aop d.58.36.1 39503 d.58.36.1 39504 d.134.1.1 41427 d.134.1.1 41428 1hkcA 917 2.89e+01 1qhaA c.55.1.3 33475 c.55.1.3 33476 c.55.1.3 33477 c.55.1.3 33478 1d4xA 375 2.93e+01 1yagA c.55.1.1 59107 c.55.1.1 59108 1h7xC 1025 3.00e+01 a.1.2.2 15689 c.1.4.1 28634 c.3.1.1 30330 c.4.1.1 30615 d.58.1.5 39013 1h8eD 482 3.01e+01 1skyE a.69.1.1 60747 b.49.1.1 60748 c.37.1.11 60749 1h7xB 1025 3.01e+01 a.1.2.2 15688 c.1.4.1 28633 c.3.1.1 30329 c.4.1.1 30614 d.58.1.5 39012 1h7xA 1025 3.02e+01 1h7wA a.1.2.2 15687 c.1.4.1 28632 c.3.1.1 30328 c.4.1.1 30613 d.58.1.5 39011 1pea 385 3.09e+01 1pea c.93.1.1 35662 1mmq 170 3.12e+01 1hfc d.92.1.11 40396 1gteA 1025 3.12e+01 1mxa 383 3.12e+01 1mxb d.130.1.1 41326 d.130.1.1 41327 d.130.1.1 41328 1h7wD 1025 3.17e+01 a.1.2.2 15686 c.1.4.1 28631 c.3.1.1 30327 c.4.1.1 30612 d.58.1.5 39010 1gthA 1025 3.18e+01 1h7wA 1025 3.19e+01 1h7wA a.1.2.2 15683 c.1.4.1 28628 c.3.1.1 30324 c.4.1.1 30609 d.58.1.5 39007 1i9zA 347 3.21e+01 1i9yA d.151.1.2 62102 2std 172 3.25e+01 3stdA d.17.4.1 38085 1h7wB 1025 3.26e+01 a.1.2.2 15684 c.1.4.1 28629 c.3.1.1 30325 c.4.1.1 30610 d.58.1.5 39008 1i9yA 347 3.28e+01 1i9yA d.151.1.2 62101 1hyuA 521 3.29e+01 1hyuA c.3.1.5 30547 c.3.1.5 30548 c.47.1.2 32779 c.47.1.2 32780 1ef1A 294 3.36e+01 1ef1A a.11.2.1 16368 b.55.1.5 27003 d.15.1.4 37611 1jp3A 253 3.36e+01 1f75A c.101.1.1 63221 1plr 258 3.39e+01 1plq d.131.1.2 41390 d.131.1.2 41391 1gthC 1025 3.39e+01 1e3dB 542 3.45e+01 1h2rL e.18.1.1 59189 1a58 177 3.45e+01 2cpl b.62.1.1 27495 1sesA 421 3.50e+01 1sesA a.2.7.1 15710 d.104.1.1 40710 1yagA 375 3.52e+01 1yagA c.55.1.1 33449 c.55.1.1 33450 1a8vA 121 3.55e+01 1a62 a.140.3.1 64712 b.40.4.5 64713 1jcxA 267 3.55e+01 c.1.10.4 66510 1pidB 25 3.59e+01 g.1.1.1 43829 1hqsA 423 3.59e+01 1iso c.77.1.1 61154 1jmuB 666 3.59e+01 1hkbA 917 3.65e+01 1qhaA c.55.1.3 33479 c.55.1.3 33480 c.55.1.3 33481 c.55.1.3 33482 1fwsA 267 3.69e+01 1d9eA c.1.10.4 60063 1tahB 318 3.74e+01 1cvl c.69.1.18 34774 1qhqA 140 3.76e+01 1qhqA b.6.1.1 63326 1qs0B 338 3.80e+01 1qs0B c.36.1.3 31830 c.48.1.2 33103 1gr8A 412 3.83e+01 1b7bA 310 3.84e+01 1b7bA c.73.1.1 34963 1gt8C 1025 3.85e+01 1k4jA 230 3.88e+01 1k8cA 322 3.92e+01 1tahA 318 3.94e+01 1cvl c.69.1.18 34775 1i1iP 681 3.99e+01 1i1iP d.92.1.5 40297 1k42A 168 4.00e+01 1fxqA 267 4.00e+01 1d9eA c.1.10.4 60108