# List of top-scoring protein chains for t2k-100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1rypI 222 1.93e-01 d.153.1.4 41877 1rypE 242 8.53e-01 1rypE d.153.1.4 41936 1hxiA 121 1.56e+00 1hxiA a.118.8.1 61366 1k32A 1045 2.67e+00 b.36.1.3 68068 b.68.7.1 68069 b.69.9.1 68070 c.14.1.2 68071 2ak3A 226 2.70e+00 1zin c.37.1.1 31892 g.41.2.1 45193 256bA 106 3.06e+00 256bA a.24.3.1 16539 1f4kA 122 3.22e+00 1bm9A a.4.5.7 59646 1jqeA 292 3.24e+00 1rypA 243 3.28e+00 1pmaA d.153.1.4 41932 1pmaP 211 3.39e+00 1pmaP d.153.1.4 41863 1dmgA 225 3.72e+00 1dmgA c.22.1.1 31036 1din 236 3.89e+00 1din c.69.1.9 34682 1qo7A 394 4.02e+00 1qo7A c.69.1.11 34697 1bh9B 89 4.30e+00 1bh9B a.22.1.3 16485 1bm9A 122 5.23e+00 1bm9A a.4.5.7 16116 1ayyA 151 5.32e+00 1apyA d.153.1.5 42016 1ciy 590 5.50e+00 1ciy b.18.1.3 23720 b.77.2.1 27977 f.1.3.1 43392 1adoA 363 6.00e+00 1fbaA c.1.10.1 29124 1j7lA 264 6.16e+00 d.144.1.6 62697 1qb2A 109 6.27e+00 1qb2A a.36.1.1 17125 1a59 378 6.48e+00 1aj8A a.103.1.1 18902 1fts 295 6.53e+00 1ng1 a.24.13.1 16968 c.37.1.10 32279 1cd9C 175 6.54e+00 1bgc a.26.1.1 16816 1hbzA 498 6.56e+00 1cf9A e.5.1.1 60937 1jagA 241 6.61e+00 c.37.1.1 66463 1h6zA 913 6.71e+00 1cseE 274 6.82e+00 1gci c.41.1.1 32481 1knzA 164 6.85e+00 e.34.1.1 68709 1ddcA 247 7.02e+00 1ddcA a.138.1.3 19684 1pmaA 233 7.50e+00 1pmaA d.153.1.4 41918 9gafA 295 7.54e+00 1apyA d.153.1.5 42008 1jqSB 32 7.95e+00 1jqsB 32 7.95e+00 i.1.1.1 63238 1j7iA 264 8.11e+00 1j7iA d.144.1.6 62694 2fsp 124 8.54e+00 1dz3A c.23.1.1 31119 1srrA 124 9.75e+00 1dz3A c.23.1.1 31110 1aj8A 371 9.83e+00 1aj8A a.103.1.1 18900 1qp6A 35 9.87e+00 1qp6A k.16.1.1 46443 1aa7A 158 9.88e+00 1aa7A a.95.1.1 18741 3adk 195 9.93e+00 1zin c.37.1.1 31885 1h6oA 204 1.01e+01 a.146.1.1 60689 1jb1A 205 1.01e+01 1jb1A c.91.1.2 62832 1jqjC 343 1.08e+01 a.80.1.1 67097 c.37.1.13 67098 1yghA 164 1.14e+01 1yghA d.108.1.1 40802 1e2o 233 1.16e+01 1eaf c.43.1.1 32631 1ks9A 291 1.19e+01 a.100.1.7 68857 c.2.1.6 68858 1f0yA 302 1.26e+01 2hdhA a.100.1.3 18793 c.2.1.6 30197 2hdhA 293 1.32e+01 2hdhA a.100.1.3 18795 c.2.1.6 30199 1gks 78 1.37e+01 1cc5 a.3.1.1 15909 1whtA 256 1.37e+01 1ivyA c.69.1.5 34646 2ucz 165 1.37e+01 1u9aA d.20.1.1 38330 1bgeB 175 1.45e+01 1bgc a.26.1.1 16824 1bgc 174 1.46e+01 1bgc a.26.1.1 16822 1k6iA 352 1.48e+01 c.2.1.2 68223 1fjgV 26 1.57e+01 j.9.1.1 46116 1whsA 255 1.57e+01 1ivyA c.69.1.5 34649 1hfc 169 1.60e+01 1hfc d.92.1.11 40335 1qcrD 75 1.60e+01 1qcrD a.3.1.3 15956 f.2.1.8 43674 1k6xA 352 1.72e+01 c.2.1.2 68238 830cA 168 1.73e+01 1ck7A d.92.1.11 40400 1cby 259 1.73e+01 1cby d.103.1.1 40705 1bhgA 613 1.79e+01 1bhgA b.1.4.1 22161 b.18.1.5 23766 c.1.8.3 28889 1rypF 233 1.79e+01 1rypF d.153.1.4 41937 1cxyA 90 1.89e+01 1cyo d.120.1.1 41085 1jk3A 158 1.90e+01 d.92.1.11 66790 1sur 215 1.96e+01 1sur c.26.2.2 31620 1ctn 540 1.99e+01 1ctn b.1.1.5 21876 c.1.8.5 29005 d.26.3.1 38439 1epxA 370 2.02e+01 1fbaA c.1.10.1 29150 1furA 467 2.05e+01 1furA a.127.1.1 19403 1edqA 540 2.05e+01 1ctn b.1.1.5 21873 c.1.8.5 29002 d.26.3.1 38436 1b66A 140 2.06e+01 1b66A d.96.1.2 40657 1f00I 282 2.08e+01 1f00I b.1.14.1 22368 b.1.14.1 22369 d.169.1.3 42439 1ck7A 631 2.15e+01 1ck7A a.20.1.2 58969 b.66.1.1 27538 d.92.1.11 58970 g.14.1.2 44674 g.14.1.2 44675 g.14.1.2 44676 1a1z 91 2.16e+01 1a1z a.77.1.1 18427 1gtqA 140 2.17e+01 1b66A d.96.1.2 40661 1ret 43 2.18e+01 1ret a.4.1.2 16024 1a27 289 2.20e+01 1fds c.2.1.2 29839 1a6dA 545 2.25e+01 1a6dA a.129.1.2 19488 c.8.5.2 30819 d.56.1.2 38936 1gh8A 89 2.25e+01 1gh8A d.58.12.1 39309 1k78A 149 2.30e+01 a.4.1.5 68255 a.4.1.5 68256 1iciA 256 2.33e+01 1iciA c.31.1.5 62266 1napA 70 2.37e+01 1tvxA d.9.1.1 37445 1aqb 183 2.48e+01 1aqb b.60.1.1 27084 1add 349 2.51e+01 1a4mA c.1.9.1 29020 1lh1 153 2.54e+01 2gdm a.1.1.2 15222 2lh2 153 2.54e+01 2gdm a.1.1.2 15220 2gdm 153 2.54e+01 2gdm a.1.1.2 15212 1rypB 250 2.59e+01 1rypB d.153.1.4 41933 2bmhA 455 2.62e+01 1bu7A a.104.1.1 18941 1ijdB 42 2.64e+01 f.3.1.1 66156 1a4mA 349 2.64e+01 1a4mA c.1.9.1 29014 1fdt 327 2.64e+01 1fds c.2.1.2 29841 1gtmA 419 2.73e+01 1hwyA c.2.1.7 30223 c.58.1.1 33871 1ytc 112 2.77e+01 1ycc a.3.1.1 15835 1l5aA 436 2.79e+01 1jpzA 473 2.80e+01 a.104.1.1 67069 1cxvA 164 2.90e+01 1ck7A d.92.1.11 40404 1fds 327 2.98e+01 1fds c.2.1.2 29838 1hvvA 75 2.99e+01 1hvvA h.1.15.1 45639 1a1w 91 2.99e+01 1a1z a.77.1.1 18425 1fd9A 213 3.02e+01 1fd9A d.26.1.1 59771 1bu7A 455 3.04e+01 1bu7A a.104.1.1 18937 1sfcB 83 3.06e+01 1sfcB h.1.15.1 45644 1hr6B 443 3.06e+01 1be3A d.185.1.1 61166 d.185.1.1 61167 1ab4 477 3.07e+01 1ab4 e.11.1.1 43251 1res 43 3.09e+01 1ret a.4.1.2 16023 1jthB 77 3.11e+01 h.1.15.1 67271 1sup 275 3.11e+01 1gci c.41.1.1 32510 1a1s 314 3.14e+01 1othA c.78.1.1 35258 c.78.1.1 35259 1jmeA 455 3.17e+01 a.104.1.1 66885 1hlrA 907 3.29e+01 a.56.1.1 65850 d.15.4.2 65851 d.41.1.1 65852 d.133.1.1 65853 1gci 269 3.31e+01 1gci c.41.1.1 32503 1eumA 165 3.33e+01 1eumA a.25.1.1 59507 1b63A 333 3.33e+01 1b63A d.14.1.3 37566 d.122.1.2 41107 1myo 118 3.34e+01 2myo a.118.2.1 19174 1rypK 198 3.34e+01 d.153.1.4 41879 1s01 283 3.45e+01 1gci c.41.1.1 32511 1thfD 253 3.46e+01 1thfD c.1.2.1 28535 1hbq 183 3.58e+01 1aqb b.60.1.1 27078 1hbp 183 3.73e+01 1aqb b.60.1.1 27079 1kilE 49 3.76e+01 1am2 199 3.77e+01 1am2 b.86.1.2 28381 1aky 221 3.81e+01 1zin c.37.1.1 31896 g.41.2.1 45197 1a04A 215 3.85e+01 1a04A a.4.6.2 16234 c.23.1.1 31089 1kbhA 47 3.86e+01 a.153.1.1 68382 1ehiA 377 3.89e+01 1iow c.30.1.2 31716 d.142.1.1 41484 1rypC 244 3.91e+01 1rypC d.153.1.4 41934 3ladA 476 3.96e+01 1lvl c.3.1.5 30573 c.3.1.5 30574 d.87.1.1 40208 1reqA 727 3.99e+01 1reqA c.1.19.1 29620 c.23.6.1 31247