PFRMAT SS
TARGET T0191
AUTHOR 4069-6308-1312 
METHOD This file is the result of combining several RDB files, specifically
METHOD T0191.t2k.dssp-ebghstl.rdb  (weight 1.53986)
METHOD T0191.t2k.stride-ebghtl.rdb  (weight 1.24869)
METHOD T0191.t2k.str.rdb  (weight 1.53983)
METHOD T0191.t2k.alpha.rdb  (weight 0.659012)
METHOD These files were combined by translating their predictions into EHL
METHOD predictions with tables generated by compare-real, and then combining
METHOD those predictions with weights proportional to their mutual information
METHOD with the EHL alphabet.  The comments from the individual files follow.
METHOD
METHOD Comments from T0191.t2k.dssp-ebghstl.rdb
METHOD ============================================
METHOD TARGET T0191
METHOD Using neural net t2k-5740-IDaaHr-5-15-7-15-9-15-13-ebghstl-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	    7 (1 EBGHSTL )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0191.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 188
METHOD
METHOD ============================================
METHOD Comments from T0191.t2k.stride-ebghtl.rdb
METHOD ============================================
METHOD TARGET T0191
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-ebghtl-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	    6 (1 EBGHTL )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0191.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 188
METHOD
METHOD ============================================
METHOD Comments from T0191.t2k.str.rdb
METHOD ============================================
METHOD TARGET T0191
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-str-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	   13 (1 str )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0191.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 188
METHOD
METHOD ============================================
METHOD Comments from T0191.t2k.alpha.rdb
METHOD ============================================
METHOD TARGET T0191
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-alpha-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	   11 (1 ABCDEFGHIST )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0191.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 188
METHOD
METHOD ============================================
MODEL 1
I C 0.86
G C 0.80
Y C 0.74
N C 0.63
T C 0.49
D H 0.75
G H 0.91
I H 0.95
G H 0.95
A H 0.96
R H 0.96
M H 0.95
A H 0.95
L H 0.94
E H 0.91
E H 0.82
E H 0.54
I C 0.81
G C 0.81
R C 0.78
V C 0.70
K C 0.76
D C 0.85
K C 0.71
N E 0.79
I E 0.93
V E 0.93
I E 0.92
Y E 0.79
G C 0.62
A C 0.84
G C 0.62
G H 0.90
A H 0.94
A H 0.96
R H 0.96
A H 0.96
V H 0.96
A H 0.96
F H 0.95
E H 0.93
L H 0.89
A H 0.76
K C 0.57
D C 0.90
N C 0.86
N C 0.57
I E 0.88
I E 0.92
I E 0.92
A E 0.85
N E 0.63
R C 0.82
T C 0.88
V H 0.85
E H 0.91
K H 0.93
A H 0.95
E H 0.95
A H 0.95
L H 0.95
A H 0.94
K H 0.91
E H 0.86
I H 0.73
A H 0.53
E C 0.51
K C 0.59
L C 0.72
N C 0.72
K C 0.60
K C 0.53
F C 0.48
G C 0.54
E E 0.49
E E 0.51
V C 0.61
K C 0.79
F H 0.60
S H 0.66
G H 0.73
L H 0.80
D H 0.86
V H 0.85
D H 0.80
L H 0.75
D H 0.52
G C 0.73
V C 0.84
D C 0.81
I E 0.90
I E 0.93
I E 0.93
N E 0.88
A C 0.50
T C 0.77
P C 0.80
I C 0.78
G C 0.81
M C 0.80
Y C 0.78
P C 0.76
N C 0.78
I C 0.72
D C 0.74
V C 0.70
E C 0.69
P C 0.68
I C 0.60
V C 0.60
K C 0.59
A H 0.73
E H 0.70
K H 0.62
L C 0.54
R C 0.76
E C 0.82
D C 0.84
M C 0.58
V E 0.86
V E 0.91
M E 0.90
D E 0.86
L E 0.69
I E 0.48
Y C 0.74
N C 0.86
P C 0.81
L C 0.81
E C 0.73
T C 0.59
V H 0.82
L H 0.88
L H 0.92
K H 0.93
E H 0.94
A H 0.94
K H 0.92
K H 0.84
V C 0.61
N C 0.92
A C 0.79
K E 0.65
T E 0.64
I C 0.53
N C 0.74
G C 0.62
L H 0.83
G H 0.89
M H 0.91
L H 0.89
I H 0.89
Y H 0.90
Q H 0.90
G H 0.87
A H 0.84
V H 0.76
A H 0.58
F C 0.63
K C 0.89
END