PFRMAT SS
TARGET T0191
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-alpha-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	   11 (1 ABCDEFGHIST )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0191.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 188
METHOD
MODEL 1
I E 0.125
G D 0.225
Y E 0.170
N E 0.175
T H 0.428
D H 0.620
G H 0.723
I H 0.841
G H 0.921
A H 0.949
R H 0.935
M H 0.957
A H 0.946
L H 0.854
E H 0.773
E H 0.659
E B 0.267
I S 0.278
G I 0.211
R E 0.172
V S 0.290
K G 0.400
D S 0.646
K B 0.410
N E 0.503
I E 0.782
V E 0.813
I E 0.447
Y S 0.275
G B 0.175
A S 0.284
G D 0.303
G H 0.626
A H 0.810
A H 0.908
R H 0.964
A H 0.971
V H 0.964
A H 0.919
F H 0.885
E H 0.880
L H 0.565
A H 0.475
K G 0.240
D S 0.480
N E 0.453
N E 0.444
I E 0.745
I E 0.790
I E 0.465
A G 0.222
N E 0.380
R S 0.166
T B 0.502
V H 0.661
E H 0.903
K H 0.878
A H 0.943
E H 0.947
A H 0.954
L H 0.934
A H 0.875
K H 0.874
E H 0.786
I H 0.398
A H 0.404
E H 0.448
K H 0.201
L S 0.182
N E 0.162
K E 0.248
K E 0.224
F E 0.292
G E 0.328
E E 0.368
E E 0.241
V B 0.291
K B 0.335
F H 0.486
S H 0.745
G H 0.621
L H 0.770
D H 0.789
V H 0.771
D H 0.584
L H 0.369
D H 0.468
G S 0.575
V E 0.437
D G 0.543
I E 0.751
I E 0.751
I E 0.622
N E 0.345
A S 0.357
T B 0.273
P B 0.219
I H 0.173
G S 0.279
M C 0.176
Y C 0.336
P B 0.227
N E 0.175
I H 0.226
D S 0.239
V S 0.195
E B 0.258
P B 0.353
I B 0.232
V B 0.330
K B 0.316
A I 0.466
E H 0.582
K H 0.318
L S 0.178
R H 0.156
E S 0.164
D S 0.193
M E 0.434
V E 0.617
V E 0.546
M E 0.554
D E 0.408
L E 0.435
I E 0.382
Y E 0.265
N B 0.346
P I 0.189
L B 0.285
E B 0.185
T B 0.277
V H 0.773
L H 0.814
L H 0.875
K H 0.919
E H 0.911
A H 0.904
K H 0.794
K H 0.811
V B 0.625
N S 0.458
A E 0.311
K E 0.432
T A 0.345
I E 0.151
N D 0.263
G S 0.410
L H 0.481
G H 0.703
M H 0.839
L H 0.905
I H 0.922
Y H 0.917
Q H 0.886
G H 0.871
A H 0.797
V H 0.776
A H 0.546
F H 0.392
K H 0.429
END