# List of top-scoring protein chains for t2k-100-30-stride-ebghtl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1dl5A 317 1.37e-01 1dl5A c.66.1.7 64720 d.197.1.1 64721 1a99A 344 7.52e-01 1pot c.94.1.1 35812 1jr2A 286 1.55e+00 c.113.1.1 67111 8abp 306 1.67e+00 8abp c.93.1.1 35647 1f5sA 211 3.00e+00 1f5sA c.108.1.4 59656 1j97A 211 3.00e+00 1f5sA c.108.1.4 62753 1efvB 255 3.02e+00 1efvB c.29.1.1 31634 1qnf 484 3.78e+00 1qnf a.99.1.1 18777 c.28.1.1 31632 1l7mA 211 3.80e+00 1tig 94 4.63e+00 1tig d.68.1.1 39566 1ccwA 137 5.73e+00 1be1 c.23.6.1 31238 1dxeA 256 6.14e+00 1dxeA c.1.12.5 29310 1gps 47 8.56e+00 1gpt g.3.7.5 44176 3vtk 343 8.62e+00 1qhiA c.37.1.1 31884 1eulA 994 9.29e+00 1eulA f.2.1.10 43726 1gln 468 9.58e+00 1gln a.97.1.1 18752 c.26.1.1 31588 1g59A 468 9.72e+00 a.97.1.1 60257 c.26.1.1 60258 1bykA 255 9.81e+00 1bykA c.93.1.1 35706 1jnyA 435 1.04e+01 b.43.3.1 66982 b.44.1.1 66983 c.37.1.8 66984 7a3hA 303 1.11e+01 7a3hA c.1.8.3 28817 1toaA 313 1.14e+01 1toaA c.92.2.2 35598 1fcqA 350 1.22e+01 c.1.8.9 65006 1a3h 300 1.27e+01 7a3hA c.1.8.3 28819 1ng1 294 1.42e+01 1ng1 a.24.13.1 16961 c.37.1.10 32272 1gpt 47 1.53e+01 1gpt g.3.7.5 44175 1sesA 421 1.55e+01 1sesA a.2.7.1 15710 d.104.1.1 40710 1kxrA 339 1.61e+01 1lkxA 697 1.62e+01 1aps 98 1.68e+01 2acy d.58.10.1 39299 1akeA 214 1.69e+01 1zin c.37.1.1 31905 g.41.2.1 45185 1kamA 194 1.71e+01 2reb 352 1.82e+01 2reb c.37.1.11 32282 d.48.1.1 38767 1io2A 213 1.83e+01 1ekeA c.55.3.1 62612 2ng1 293 1.86e+01 1ng1 a.24.13.1 16962 c.37.1.10 32273 3tmkA 216 1.86e+01 3tmkA c.37.1.1 31920 1jpnA 296 1.88e+01 a.24.13.1 67039 c.37.1.10 67040 1fcbA 511 1.93e+01 1gox c.1.4.1 28620 d.120.1.1 41087 1jykA 254 1.97e+01 c.68.1.13 67458 1qo7A 394 2.06e+01 1qo7A c.69.1.11 34697 1lehA 364 2.07e+01 1bw9A c.2.1.7 30268 c.58.1.1 33916 2pviA 157 2.09e+01 3pviA c.52.1.6 33302 1efvA 315 2.12e+01 1efvA c.29.1.1 31633 c.31.1.2 31728 1qcwA 410 2.13e+01 1gox c.1.4.1 28622 1bxyA 60 2.24e+01 1bxyA d.59.1.1 39525 1dcfA 136 2.25e+01 1dcfA c.23.1.2 31124 1g8fA 511 2.26e+01 1g8fA b.58.1.2 60348 c.26.1.5 60349 c.37.1.15 60350 1bn7A 294 2.28e+01 1bn6A c.69.1.8 34677 1cqwA 295 2.35e+01 1b6g c.69.1.8 34679 1b73A 254 2.37e+01 1b74A c.78.2.1 35266 c.78.2.1 35267 1pszA 303 2.45e+01 1toaA c.92.2.2 35600 1jjfA 268 2.47e+01 c.69.1.2 66765 3pviA 157 2.52e+01 3pviA c.52.1.6 33300 1pvuA 154 2.52e+01 3pviA c.52.1.6 33306 1k9sA 237 2.53e+01 c.56.2.1 68359 2tmkA 216 2.54e+01 3tmkA c.37.1.1 31928 1ecpA 238 2.56e+01 1ecpA c.56.2.1 33775 2minB 522 2.56e+01 1qguB c.92.2.3 35610 1e6bA 221 2.57e+01 1e6bA a.45.1.1 59294 c.47.1.5 59295 1cliA 345 2.71e+01 1cliA d.79.4.1 39816 d.139.1.1 41459 1ln4A 104 2.72e+01 3adk 195 2.74e+01 1zin c.37.1.1 31885 1goiA 499 2.75e+01 b.72.2.1 65413 c.1.8.5 65414 d.26.3.1 65415 1srvA 145 2.78e+01 1derA c.8.5.1 30817 1amuA 563 2.83e+01 1amuA e.23.1.1 43351 1be1 137 2.84e+01 1be1 c.23.6.1 31237 1hw6A 278 2.85e+01 1frb c.1.7.1 61296 1fs1B 141 2.89e+01 1vcbB a.122.1.1 19252 d.42.1.2 38664 1fts 295 2.92e+01 1ng1 a.24.13.1 16968 c.37.1.10 32279 1gteA 1025 2.92e+01 1gthD 1025 2.94e+01 1jae 471 2.96e+01 1smd b.71.1.1 27773 c.1.8.1 28760 1ghsA 306 2.98e+01 1aq0A c.1.8.3 28840 1kkhA 317 2.99e+01 1nbaA 264 3.01e+01 1nbaA c.33.1.1 31753 1a0cA 438 3.01e+01 1a0cA c.1.15.3 29529 1g38A 393 3.05e+01 2admA c.66.1.10 60235 1imbA 277 3.06e+01 1imbA e.7.1.1 42957 1fw1A 216 3.07e+01 a.45.1.1 60051 c.47.1.5 60052 1obpA 159 3.08e+01 1obpA b.60.1.1 27092 1egiA 147 3.10e+01 1eggA d.169.1.1 42331 1j8mF 297 3.11e+01 1ng1 a.24.13.1 62742 c.37.1.10 62743 1dkuA 317 3.12e+01 1dkuA c.61.1.2 34118 c.61.1.2 34119 1qgiA 259 3.15e+01 1qgiA d.2.1.7 37001 1uch 230 3.16e+01 1uch d.3.1.6 37129 1dpsD 167 3.22e+01 1dpsA a.25.1.1 16719 1kpsB 171 3.23e+01 a.118.12.1 68787 1dpsA 167 3.26e+01 1dpsA a.25.1.1 16716 1yacA 208 3.27e+01 1yacA c.33.1.2 31757 1b77A 228 3.31e+01 1b77A d.131.1.2 41362 d.131.1.2 41363 1jhdA 396 3.34e+01 b.58.1.2 66712 c.26.1.5 66713 1jqsC 68 3.38e+01 i.1.1.1 63239 5p21 166 3.39e+01 1ctqA c.37.1.8 31966 1at1A 310 3.40e+01 3csuA c.78.1.1 35168 c.78.1.1 35169 1h7xB 1025 3.43e+01 a.1.2.2 15688 c.1.4.1 28633 c.3.1.1 30329 c.4.1.1 30614 d.58.1.5 39012 1gt8D 1025 3.48e+01 1cjxA 357 3.48e+01 1cjxA d.32.1.3 38516 d.32.1.3 38517 1h7xD 1025 3.49e+01 a.1.2.2 15690 c.1.4.1 28635 c.3.1.1 30331 c.4.1.1 30616 d.58.1.5 39014 1eggA 147 3.53e+01 1eggA d.169.1.1 42333 2hhmA 276 3.57e+01 1imbA e.7.1.1 42955 1h75A 81 3.57e+01 1h75A c.47.1.1 60716 1h7wB 1025 3.58e+01 a.1.2.2 15684 c.1.4.1 28629 c.3.1.1 30325 c.4.1.1 30610 d.58.1.5 39008 1dkrA 317 3.59e+01 1dkuA c.61.1.2 34114 c.61.1.2 34115 1gteD 1025 3.60e+01 1h7xC 1025 3.67e+01 a.1.2.2 15689 c.1.4.1 28634 c.3.1.1 30330 c.4.1.1 30615 d.58.1.5 39013 1gt8B 1025 3.67e+01 1pbn 289 3.71e+01 1b8oA c.56.2.1 33771 1gox 370 3.73e+01 1gox c.1.4.1 28607 1d2eA 397 3.75e+01 1efcA b.43.3.1 25701 b.44.1.1 25741 c.37.1.8 32136 1h7wD 1025 3.77e+01 a.1.2.2 15686 c.1.4.1 28631 c.3.1.1 30327 c.4.1.1 30612 d.58.1.5 39010 1i1nA 226 3.79e+01 2plc 274 3.79e+01 2plc c.1.18.2 29614 1j5eK 129 3.80e+01 1qo0D 196 3.81e+01 1qo0D c.23.1.3 31125 1j6zA 376 3.85e+01 1yagA c.55.1.1 62667 c.55.1.1 62668 1d2kA 392 3.92e+01 1d2kA c.1.8.5 29008 d.26.3.1 38442 2scuA 288 3.93e+01 2scuA c.2.1.8 30303 c.23.4.1 31131 1wdnA 226 3.93e+01 1lst c.94.1.1 35816 1kr5A 226 3.93e+01 c.66.1.7 68847 2pii 112 3.95e+01 2pii d.58.5.1 39071 1iloA 77 3.98e+01 c.47.1.1 66205