PFRMAT SS
TARGET T0191
AUTHOR 4069-6308-1312 
METHOD This file is the result of combining several RDB files, specifically
METHOD T0191.t2k.dssp-ebghstl.rdb  (weight 1.53986)
METHOD T0191.t2k.stride-ebghtl.rdb  (weight 1.24869)
METHOD T0191.t2k.str.rdb  (weight 1.53983)
METHOD T0191.t2k.alpha.rdb  (weight 0.659012)
METHOD These files were combined by translating their predictions into EHL
METHOD predictions with tables generated by compare-real, and then combining
METHOD those predictions with weights proportional to their mutual information
METHOD with the EHL alphabet.  The comments from the individual files follow.
METHOD
METHOD Comments from T0191.t2k.dssp-ebghstl.rdb
METHOD ============================================
METHOD TARGET T0191
METHOD Using neural net t2k-5740-IDaaHr-5-15-7-15-9-15-13-ebghstl-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	    7 (1 EBGHSTL )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0191.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 175
METHOD
METHOD ============================================
METHOD Comments from T0191.t2k.stride-ebghtl.rdb
METHOD ============================================
METHOD TARGET T0191
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-ebghtl-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	    6 (1 EBGHTL )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0191.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 175
METHOD
METHOD ============================================
METHOD Comments from T0191.t2k.str.rdb
METHOD ============================================
METHOD TARGET T0191
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-str-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	   13 (1 str )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0191.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 175
METHOD
METHOD ============================================
METHOD Comments from T0191.t2k.alpha.rdb
METHOD ============================================
METHOD TARGET T0191
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-alpha-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	   11 (1 ABCDEFGHIST )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0191.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 175
METHOD
METHOD ============================================
MODEL 1
M C 0.91
I C 0.84
N C 0.83
A C 0.81
K C 0.79
T C 0.66
K E 0.53
V E 0.77
I E 0.84
G E 0.85
L E 0.84
I E 0.61
G C 0.67
H C 0.78
P C 0.74
V C 0.62
E C 0.64
H C 0.69
S C 0.77
F C 0.80
S C 0.81
P H 0.76
I H 0.85
M H 0.91
H H 0.93
N H 0.94
A H 0.94
A H 0.95
F H 0.95
K H 0.94
D H 0.89
K H 0.50
G C 0.91
L C 0.88
N C 0.78
Y E 0.45
V E 0.67
Y E 0.73
V E 0.63
A E 0.46
F C 0.49
D C 0.50
V C 0.67
L C 0.82
P H 0.69
E H 0.73
N H 0.80
L H 0.91
K H 0.94
Y H 0.95
V H 0.95
I H 0.95
D H 0.94
G H 0.93
A H 0.91
K H 0.85
A H 0.66
L C 0.71
G C 0.92
I C 0.79
V C 0.67
G C 0.51
F E 0.66
N E 0.75
V E 0.69
T E 0.54
I C 0.55
P C 0.54
H H 0.46
K H 0.69
I H 0.86
E H 0.87
I H 0.87
M H 0.88
K H 0.86
Y H 0.84
L H 0.81
D H 0.74
E H 0.60
I C 0.55
D C 0.66
K H 0.92
D H 0.93
A H 0.93
Q H 0.91
L H 0.84
I H 0.47
G C 0.74
A C 0.62
V C 0.48
N E 0.50
T E 0.72
I E 0.81
K E 0.84
I E 0.52
E C 0.77
D C 0.90
G C 0.82
K C 0.49
A E 0.68
I E 0.55
G C 0.51
Y C 0.55
N C 0.49
T H 0.44
D H 0.74
G H 0.92
I H 0.95
G H 0.96
A H 0.96
R H 0.96
M H 0.96
A H 0.95
L H 0.94
E H 0.92
E H 0.83
E H 0.54
I C 0.81
G C 0.82
R C 0.80
V C 0.66
K C 0.71
D C 0.80
K C 0.71
N E 0.76
I E 0.93
V E 0.93
I E 0.92
Y E 0.79
G C 0.65
A C 0.81
G C 0.52
G H 0.90
A H 0.94
A H 0.95
R H 0.96
A H 0.96
V H 0.96
A H 0.96
F H 0.96
E H 0.95
L H 0.94
A H 0.89
K H 0.73
D C 0.65
N C 0.91
N C 0.82
I E 0.79
I E 0.90
I E 0.91
A E 0.85
N E 0.66
R C 0.81
T C 0.89
V H 0.86
E H 0.92
K H 0.94
A H 0.95
E H 0.95
A H 0.94
L H 0.94
A H 0.93
K H 0.90
E H 0.85
I H 0.72
A H 0.55
E H 0.52
K C 0.53
L C 0.68
N C 0.68
K C 0.60
K C 0.55
F C 0.51
G C 0.66
E C 0.48
E E 0.50
V C 0.53
K C 0.70
F C 0.48
S H 0.53
G H 0.58
L H 0.77
D H 0.84
V H 0.85
D H 0.80
L H 0.76
D H 0.52
G C 0.72
V C 0.85
D C 0.83
I E 0.90
I E 0.93
I E 0.93
N E 0.88
A C 0.49
T C 0.74
P C 0.79
I C 0.79
G C 0.83
M C 0.82
Y C 0.78
P C 0.75
N C 0.81
I C 0.74
D C 0.75
V C 0.72
E C 0.70
P C 0.68
I C 0.57
V C 0.56
K C 0.56
A H 0.75
E H 0.73
K H 0.67
L C 0.47
R C 0.72
E C 0.83
D C 0.86
M C 0.67
V E 0.84
V E 0.91
M E 0.90
D E 0.87
L E 0.69
I C 0.51
Y C 0.75
N C 0.86
P C 0.82
L C 0.82
E C 0.74
T C 0.59
V H 0.75
L H 0.83
L H 0.91
K H 0.92
E H 0.94
A H 0.94
K H 0.93
K H 0.85
V C 0.58
N C 0.92
A C 0.80
K E 0.62
T E 0.66
I C 0.47
N C 0.70
G C 0.63
L H 0.73
G H 0.82
M H 0.83
L H 0.81
I H 0.88
Y H 0.90
Q H 0.90
G H 0.90
A H 0.92
V H 0.93
A H 0.92
F H 0.92
K H 0.92
I H 0.90
W H 0.83
T H 0.50
G C 0.87
V C 0.88
E C 0.84
P C 0.87
N C 0.85
I H 0.81
E H 0.91
V H 0.93
M H 0.94
K H 0.95
N H 0.95
A H 0.95
I H 0.94
I H 0.93
D H 0.90
K H 0.82
I H 0.63
T C 0.56
K C 0.90
END