PFRMAT SS
TARGET T0191
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-alpha-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	   11 (1 ABCDEFGHIST )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0191.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 175
METHOD
MODEL 1
M E 0.186
I E 0.225
N E 0.233
A S 0.166
K B 0.242
T E 0.322
K E 0.302
V E 0.408
I E 0.441
G E 0.503
L A 0.361
I S 0.170
G C 0.250
H B 0.311
P E 0.173
V H 0.223
E H 0.207
H S 0.235
S H 0.240
F H 0.307
S H 0.311
P H 0.592
I H 0.780
M H 0.884
H H 0.852
N H 0.870
A H 0.899
A H 0.926
F H 0.910
K H 0.818
D H 0.670
K B 0.703
G S 0.403
L E 0.344
N G 0.164
Y E 0.299
V E 0.524
Y E 0.439
V E 0.359
A E 0.256
F B 0.353
D E 0.230
V B 0.345
L B 0.477
P H 0.507
E H 0.744
N H 0.645
L H 0.830
K H 0.920
Y H 0.946
V H 0.940
I H 0.916
D H 0.914
G H 0.883
A H 0.821
K H 0.544
A H 0.469
L B 0.476
G S 0.403
I E 0.279
V D 0.174
G S 0.213
F E 0.348
N E 0.382
V E 0.393
T E 0.280
I B 0.288
P H 0.436
H H 0.339
K H 0.624
I H 0.714
E H 0.786
I H 0.650
M H 0.700
K H 0.830
Y H 0.610
L H 0.539
D H 0.530
E H 0.372
I S 0.257
D B 0.588
K H 0.811
D H 0.881
A H 0.913
Q H 0.878
L H 0.832
I B 0.640
G S 0.245
A H 0.366
V E 0.300
N E 0.275
T E 0.460
I E 0.440
K E 0.465
I C 0.393
E H 0.374
D B 0.479
G S 0.702
K B 0.403
A A 0.321
I E 0.163
G B 0.202
Y E 0.253
N E 0.228
T H 0.429
D H 0.645
G H 0.752
I H 0.875
G H 0.938
A H 0.956
R H 0.948
M H 0.962
A H 0.955
L H 0.872
E H 0.790
E H 0.674
E B 0.285
I S 0.300
G B 0.212
R E 0.176
V S 0.266
K G 0.333
D S 0.614
K E 0.411
N E 0.505
I E 0.781
V E 0.830
I E 0.446
Y S 0.254
G C 0.193
A S 0.270
G H 0.233
G H 0.688
A H 0.840
A H 0.913
R H 0.964
A H 0.978
V H 0.972
A H 0.960
F H 0.960
E H 0.959
L H 0.835
A H 0.726
K H 0.516
D B 0.574
N S 0.158
N S 0.256
I E 0.729
I E 0.742
I E 0.501
A G 0.274
N E 0.370
R S 0.173
T B 0.522
V H 0.671
E H 0.906
K H 0.882
A H 0.940
E H 0.938
A H 0.948
L H 0.914
A H 0.846
K H 0.855
E H 0.775
I H 0.391
A H 0.430
E H 0.470
K H 0.229
L S 0.181
N B 0.172
K E 0.228
K E 0.207
F E 0.278
G E 0.297
E E 0.374
E E 0.217
V B 0.318
K B 0.279
F H 0.457
S H 0.642
G H 0.501
L H 0.705
D H 0.775
V H 0.756
D H 0.560
L I 0.356
D H 0.472
G S 0.600
V E 0.432
D G 0.532
I E 0.755
I E 0.740
I E 0.628
N E 0.353
A S 0.349
T C 0.297
P B 0.229
I H 0.179
G S 0.295
M C 0.226
Y C 0.313
P B 0.250
N E 0.203
I H 0.249
D S 0.267
V S 0.228
E B 0.255
P B 0.366
I B 0.223
V B 0.326
K B 0.289
A I 0.456
E H 0.607
K H 0.321
L S 0.193
R H 0.176
E H 0.158
D S 0.195
M E 0.404
V E 0.632
V E 0.560
M E 0.562
D E 0.399
L E 0.418
I E 0.378
Y B 0.271
N B 0.335
P I 0.189
L E 0.310
E B 0.193
T B 0.273
V H 0.717
L H 0.752
L H 0.857
K H 0.919
E H 0.912
A H 0.909
K H 0.800
K H 0.830
V B 0.590
N S 0.456
A E 0.300
K E 0.427
T A 0.327
I E 0.173
N D 0.291
G S 0.460
L H 0.293
G H 0.534
M H 0.653
L H 0.735
I H 0.830
Y H 0.840
Q H 0.857
G H 0.908
A H 0.907
V H 0.916
A H 0.876
F H 0.857
K H 0.839
I H 0.761
W H 0.550
T B 0.591
G S 0.527
V B 0.343
E B 0.463
P B 0.428
N B 0.352
I H 0.558
E H 0.864
V H 0.886
M H 0.928
K H 0.953
N H 0.959
A H 0.965
I H 0.942
I H 0.881
D H 0.899
K H 0.614
I H 0.419
T H 0.502
K H 0.316
END