PFRMAT SS TARGET T0189 METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-ebghtl-seeded.net METHOD This is a 4-layer network, with METHOD window units METHOD 5 15 METHOD 7 15 METHOD 9 15 METHOD 13 6 (1 EBGHTL ) METHOD The input amino acid frequencies were determined from METHOD alignment T0189.t2k-thin90.a2m.gz METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1) METHOD Counts were regularized to probabilities using METHOD /projects/compbio/lib/recode3.20comp METHOD Total sequence weight for alignment was 188 METHOD MODEL 1 M C 0.779 V E 0.534 L E 0.940 T E 0.984 V E 0.977 T E 0.817 L C 0.545 N T 0.384 P T 0.387 A E 0.371 L E 0.565 D E 0.660 R E 0.807 E E 0.903 I E 0.913 F E 0.801 I E 0.440 E T 0.515 D T 0.542 F T 0.390 Q T 0.583 V T 0.678 N T 0.728 R T 0.608 L C 0.330 Y E 0.435 R C 0.373 I C 0.317 N C 0.262 D C 0.382 L C 0.454 S C 0.682 K C 0.438 T C 0.350 Q E 0.547 M E 0.615 S E 0.360 P C 0.383 G C 0.451 G C 0.391 K H 0.667 G H 0.973 I H 0.995 N H 0.999 V H 1.000 S H 1.000 I H 1.000 A H 1.000 L H 0.999 S H 0.997 K H 0.990 L H 0.911 G C 0.921 V C 0.826 P C 0.694 S E 0.794 V E 0.959 A E 0.977 T E 0.955 G E 0.910 F E 0.806 V E 0.442 G T 0.510 G T 0.666 Y T 0.482 M H 0.440 G H 0.793 K H 0.920 I H 0.932 L H 0.948 V H 0.953 E H 0.963 E H 0.979 L H 0.966 R H 0.960 K H 0.844 I H 0.543 S T 0.480 K T 0.529 L T 0.513 I T 0.510 T C 0.651 T T 0.419 N T 0.437 F E 0.535 V E 0.873 Y E 0.892 V E 0.824 E E 0.537 G T 0.633 E T 0.702 T T 0.553 R C 0.427 E E 0.516 N E 0.666 I E 0.917 E E 0.980 I E 0.990 I E 0.987 D E 0.980 E E 0.954 K E 0.606 N T 0.876 K T 0.899 T T 0.777 I E 0.517 T E 0.881 A E 0.942 I E 0.950 N E 0.904 F E 0.737 P C 0.455 G C 0.508 P T 0.466 D T 0.433 V T 0.340 T H 0.364 D H 0.406 M H 0.426 D C 0.388 V H 0.676 N H 0.746 H H 0.815 F H 0.842 L H 0.835 R H 0.808 R H 0.620 Y H 0.632 K H 0.809 M H 0.740 T H 0.761 L H 0.712 S H 0.592 K T 0.336 V C 0.543 D C 0.619 C E 0.950 V E 0.991 V E 0.985 I E 0.877 S E 0.377 G T 0.378 S T 0.367 I T 0.457 P T 0.615 P T 0.661 G T 0.667 V T 0.492 N C 0.695 E H 0.792 G H 0.901 I H 0.937 C H 0.982 N H 0.991 E H 0.993 L H 0.993 V H 0.992 R H 0.992 L H 0.991 A H 0.986 R H 0.973 E H 0.941 R H 0.678 G C 0.928 V C 0.794 F E 0.784 V E 0.945 F E 0.955 V E 0.851 E E 0.377 Q T 0.617 T T 0.680 P T 0.635 R C 0.359 L H 0.379 L H 0.473 E H 0.588 R H 0.644 I H 0.715 Y H 0.638 E H 0.668 G H 0.709 P H 0.543 E H 0.435 F H 0.332 P T 0.359 N C 0.426 V E 0.677 V E 0.826 K E 0.777 P E 0.412 D C 0.600 L H 0.898 R H 0.993 G H 0.993 N H 0.995 H H 0.997 A H 0.995 S H 0.984 F H 0.975 L H 0.942 G C 0.785 V C 0.689 D C 0.590 L T 0.477 K C 0.507 T T 0.486 F H 0.512 D H 0.581 D H 0.727 Y H 0.969 V H 0.977 K H 0.983 L H 0.987 A H 0.985 E H 0.982 K H 0.982 L H 0.970 A H 0.895 E H 0.824 K H 0.547 S C 0.573 Q C 0.573 V E 0.710 S E 0.976 V E 0.990 V E 0.988 S E 0.954 Y E 0.567 E T 0.633 V T 0.819 K T 0.821 N T 0.719 D E 0.710 I E 0.930 V E 0.966 A E 0.966 T E 0.738 R T 0.870 E T 0.908 G T 0.611 V E 0.757 W E 0.929 L E 0.902 I E 0.699 R C 0.575 S C 0.612 K C 0.651 E C 0.700 E C 0.513 I E 0.465 D E 0.702 T E 0.732 S E 0.719 H E 0.556 L C 0.419 L C 0.503 G C 0.529 A H 0.692 G H 0.866 D H 0.997 A H 0.999 Y H 1.000 V H 1.000 A H 1.000 G H 1.000 M H 0.998 V H 0.996 Y H 0.995 Y H 0.988 F H 0.955 I H 0.895 K H 0.667 H T 0.485 G C 0.556 A C 0.608 N C 0.824 F H 0.883 L H 0.929 E H 0.940 M H 0.960 A H 0.963 K H 0.956 F H 0.946 G H 0.933 F H 0.939 A H 0.943 S H 0.932 A H 0.892 L H 0.868 A H 0.820 A H 0.678 T E 0.435 R E 0.396 R T 0.448 K T 0.633 E T 0.783 K T 0.692 Y C 0.442 M C 0.649 P C 0.806 D C 0.899 L H 0.902 E H 0.918 A H 0.926 I H 0.962 K H 0.959 K H 0.906 E H 0.869 Y H 0.671 D H 0.499 H C 0.349 F E 0.420 T E 0.746 V E 0.933 E E 0.907 R E 0.818 V C 0.550 K C 0.973 END