PFRMAT SS
TARGET T0189
AUTHOR 4069-6308-1312 
METHOD This file is the result of combining several RDB files, specifically
METHOD T0189.t2k.dssp-ebghstl.rdb  (weight 1.53986)
METHOD T0189.t2k.stride-ebghtl.rdb  (weight 1.24869)
METHOD T0189.t2k.str.rdb  (weight 1.53983)
METHOD T0189.t2k.alpha.rdb  (weight 0.659012)
METHOD These files were combined by translating their predictions into EHL
METHOD predictions with tables generated by compare-real, and then combining
METHOD those predictions with weights proportional to their mutual information
METHOD with the EHL alphabet.  The comments from the individual files follow.
METHOD
METHOD Comments from T0189.t2k.dssp-ebghstl.rdb
METHOD ============================================
METHOD TARGET T0189
METHOD Using neural net t2k-5740-IDaaHr-5-15-7-15-9-15-13-ebghstl-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	    7 (1 EBGHSTL )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0189.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 188
METHOD
METHOD ============================================
METHOD Comments from T0189.t2k.stride-ebghtl.rdb
METHOD ============================================
METHOD TARGET T0189
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-ebghtl-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	    6 (1 EBGHTL )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0189.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 188
METHOD
METHOD ============================================
METHOD Comments from T0189.t2k.str.rdb
METHOD ============================================
METHOD TARGET T0189
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-str-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	   13 (1 str )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0189.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 188
METHOD
METHOD ============================================
METHOD Comments from T0189.t2k.alpha.rdb
METHOD ============================================
METHOD TARGET T0189
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-alpha-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	   11 (1 ABCDEFGHIST )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0189.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 188
METHOD
METHOD ============================================
MODEL 1
M C 0.88
V E 0.59
L E 0.87
T E 0.92
V E 0.92
T E 0.78
L C 0.59
N C 0.71
P C 0.56
A E 0.49
L E 0.66
D E 0.72
R E 0.73
E E 0.76
I E 0.69
F E 0.61
I C 0.53
E C 0.71
D C 0.78
F C 0.80
Q C 0.87
V C 0.79
N C 0.80
R C 0.71
L C 0.54
Y C 0.51
R C 0.54
I C 0.59
N C 0.61
D C 0.64
L C 0.68
S C 0.77
K C 0.66
T C 0.54
Q C 0.49
M C 0.45
S C 0.68
P C 0.80
G C 0.84
G C 0.74
K H 0.70
G H 0.90
I H 0.95
N H 0.96
V H 0.96
S H 0.96
I H 0.96
A H 0.96
L H 0.96
S H 0.95
K H 0.90
L C 0.56
G C 0.94
V C 0.91
P C 0.73
S E 0.76
V E 0.88
A E 0.92
T E 0.88
G E 0.75
F E 0.59
V C 0.60
G C 0.83
G C 0.77
Y C 0.68
M H 0.56
G H 0.80
K H 0.92
I H 0.94
L H 0.95
V H 0.95
E H 0.95
E H 0.94
L H 0.92
R H 0.90
K H 0.79
I H 0.57
S C 0.66
K C 0.77
L C 0.84
I C 0.80
T C 0.76
T C 0.58
N C 0.58
F E 0.52
V E 0.78
Y E 0.84
V E 0.79
E C 0.49
G C 0.83
E C 0.87
T C 0.74
R C 0.64
E E 0.55
N E 0.69
I E 0.86
E E 0.91
I E 0.93
I E 0.92
D E 0.92
E E 0.88
K C 0.52
N C 0.85
K C 0.91
T C 0.86
I E 0.52
T E 0.84
A E 0.87
I E 0.88
N E 0.82
F E 0.66
P C 0.64
G C 0.82
P C 0.74
D C 0.63
V C 0.49
T H 0.56
D H 0.60
M H 0.59
D H 0.51
V H 0.78
N H 0.83
H H 0.85
F H 0.86
L H 0.86
R H 0.84
R H 0.78
Y H 0.77
K H 0.88
M H 0.87
T H 0.86
L H 0.82
S H 0.64
K C 0.66
V C 0.84
D C 0.83
C E 0.90
V E 0.93
V E 0.93
I E 0.88
S E 0.51
G C 0.77
S C 0.73
I C 0.74
P C 0.78
P C 0.78
G C 0.82
V C 0.85
N C 0.85
E H 0.86
G H 0.93
I H 0.94
C H 0.96
N H 0.96
E H 0.96
L H 0.96
V H 0.96
R H 0.96
L H 0.96
A H 0.96
R H 0.94
E H 0.89
R C 0.67
G C 0.94
V C 0.87
F E 0.67
V E 0.88
F E 0.89
V E 0.84
E C 0.54
Q C 0.85
T C 0.87
P C 0.75
R C 0.60
L H 0.53
L H 0.61
E H 0.66
R H 0.67
I H 0.75
Y H 0.82
E H 0.82
G H 0.82
P H 0.72
E H 0.52
F C 0.65
P C 0.82
N C 0.80
V E 0.80
V E 0.86
K E 0.80
P C 0.54
D C 0.80
L H 0.74
R H 0.91
G H 0.94
N H 0.95
H H 0.95
A H 0.95
S H 0.93
F H 0.89
L H 0.58
G C 0.86
V C 0.88
D C 0.82
L C 0.80
K C 0.85
T C 0.85
F H 0.68
D H 0.73
D H 0.79
Y H 0.93
V H 0.94
K H 0.95
L H 0.95
A H 0.95
E H 0.95
K H 0.94
L H 0.93
A H 0.86
E H 0.69
K C 0.65
S C 0.91
Q C 0.87
V E 0.75
S E 0.91
V E 0.93
V E 0.92
S E 0.85
Y E 0.56
E C 0.80
V C 0.79
K C 0.83
N C 0.67
D E 0.72
I E 0.90
V E 0.91
A E 0.90
T E 0.65
R C 0.84
E C 0.91
G C 0.68
V E 0.71
W E 0.87
L E 0.85
I E 0.73
R C 0.57
S C 0.65
K C 0.71
E C 0.75
E C 0.63
I E 0.51
D E 0.69
T E 0.75
S E 0.70
H E 0.54
L C 0.57
L C 0.69
G C 0.72
A H 0.49
G H 0.70
D H 0.91
A H 0.95
Y H 0.96
V H 0.96
A H 0.96
G H 0.96
M H 0.96
V H 0.96
Y H 0.95
Y H 0.94
F H 0.88
I H 0.74
K C 0.54
H C 0.81
G C 0.92
A C 0.89
N C 0.84
F H 0.92
L H 0.95
E H 0.95
M H 0.95
A H 0.95
K H 0.95
F H 0.95
G H 0.94
F H 0.95
A H 0.94
S H 0.94
A H 0.93
L H 0.92
A H 0.88
A H 0.81
T H 0.66
R H 0.49
R C 0.56
K C 0.73
E C 0.86
K C 0.82
Y C 0.80
M C 0.84
P C 0.88
D C 0.89
L H 0.90
E H 0.93
A H 0.94
I H 0.95
K H 0.94
K H 0.90
E H 0.85
Y H 0.77
D H 0.61
H C 0.56
F C 0.59
T E 0.60
V E 0.74
E E 0.74
R E 0.71
V C 0.58
K C 0.91
END