PFRMAT SS
TARGET T0189
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-alpha-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	   11 (1 ABCDEFGHIST )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0189.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 188
METHOD
MODEL 1
M B 0.329
V E 0.587
L E 0.672
T E 0.694
V A 0.448
T S 0.269
L D 0.347
N B 0.223
P E 0.353
A E 0.369
L E 0.465
D E 0.420
R E 0.389
E E 0.384
I E 0.409
F E 0.340
I B 0.260
E H 0.253
D S 0.359
F B 0.342
Q C 0.495
V H 0.257
N S 0.444
R B 0.234
L E 0.270
Y E 0.238
R B 0.284
I E 0.219
N B 0.228
D H 0.197
L H 0.187
S B 0.186
K E 0.236
T E 0.244
Q E 0.350
M E 0.269
S C 0.270
P H 0.173
G S 0.269
G S 0.369
K H 0.509
G H 0.644
I H 0.844
N H 0.932
V H 0.933
S H 0.950
I H 0.956
A H 0.966
L H 0.906
S H 0.806
K H 0.724
L B 0.686
G T 0.479
V B 0.488
P E 0.272
S E 0.414
V E 0.460
A E 0.456
T A 0.230
G B 0.249
F H 0.153
V G 0.177
G D 0.236
G S 0.184
Y H 0.191
M H 0.343
G H 0.508
K H 0.782
I H 0.911
L H 0.926
V H 0.923
E H 0.940
E H 0.876
L H 0.734
R H 0.787
K H 0.738
I H 0.423
S H 0.345
K B 0.283
L S 0.302
I E 0.308
T E 0.373
T E 0.237
N H 0.166
F E 0.307
V E 0.508
Y E 0.460
V E 0.309
E B 0.240
G H 0.263
E S 0.332
T B 0.334
R E 0.218
E B 0.301
N E 0.298
I E 0.540
E E 0.728
I E 0.498
I E 0.620
D E 0.564
E E 0.432
K C 0.559
N H 0.323
K B 0.398
T S 0.569
I E 0.413
T E 0.466
A E 0.489
I E 0.557
N E 0.473
F E 0.373
P B 0.206
G B 0.136
P H 0.148
D H 0.211
V H 0.251
T H 0.504
D H 0.591
M H 0.567
D H 0.430
V H 0.681
N H 0.792
H H 0.752
F H 0.736
L H 0.778
R H 0.731
R H 0.701
Y H 0.615
K H 0.716
M H 0.838
T H 0.649
L H 0.453
S H 0.535
K S 0.523
V E 0.454
D G 0.426
C E 0.718
V E 0.824
V E 0.641
I T 0.305
S S 0.221
G S 0.186
S B 0.188
I B 0.216
P B 0.254
P H 0.223
G S 0.245
V B 0.338
N B 0.479
E H 0.734
G H 0.907
I H 0.909
C H 0.949
N H 0.969
E H 0.982
L H 0.954
V H 0.951
R H 0.964
L H 0.968
A H 0.934
R H 0.824
E H 0.765
R B 0.813
G T 0.622
V B 0.672
F E 0.639
V E 0.555
F E 0.651
V E 0.567
E E 0.404
Q I 0.312
T B 0.282
P S 0.302
R B 0.223
L H 0.353
L H 0.545
E H 0.655
R H 0.621
I H 0.649
Y H 0.732
E H 0.734
G H 0.565
P H 0.392
E H 0.384
F S 0.406
P E 0.380
N G 0.518
V E 0.626
V E 0.639
K E 0.497
P B 0.294
D E 0.308
L H 0.478
R H 0.795
G H 0.798
N H 0.842
H H 0.850
A H 0.847
S H 0.796
F H 0.548
L B 0.629
G S 0.588
V B 0.405
D B 0.166
L E 0.170
K S 0.224
T B 0.398
F H 0.575
D H 0.741
D H 0.788
Y H 0.903
V H 0.960
K H 0.969
L H 0.949
A H 0.930
E H 0.941
K H 0.921
L H 0.824
A H 0.689
E H 0.475
K B 0.349
S T 0.247
Q G 0.201
V E 0.727
S E 0.804
V E 0.655
V E 0.539
S E 0.386
Y D 0.165
E D 0.412
V H 0.385
K B 0.324
N T 0.258
D E 0.500
I E 0.520
V E 0.527
A E 0.407
T C 0.540
R H 0.429
E B 0.428
G S 0.302
V E 0.458
W E 0.514
L E 0.400
I B 0.331
R B 0.368
S B 0.285
K B 0.326
E B 0.445
E E 0.315
I E 0.415
D E 0.481
T E 0.449
S E 0.268
H C 0.561
L H 0.390
L B 0.334
G S 0.349
A H 0.443
G H 0.513
D H 0.779
A H 0.860
Y H 0.913
V H 0.919
A H 0.900
G H 0.944
M H 0.950
V H 0.891
Y H 0.895
Y H 0.856
F H 0.779
I H 0.642
K H 0.454
H B 0.458
G S 0.481
A B 0.440
N B 0.691
F H 0.681
L H 0.931
E H 0.921
M H 0.915
A H 0.918
K H 0.950
F H 0.927
G H 0.912
F H 0.915
A H 0.904
S H 0.847
A H 0.835
L H 0.818
A H 0.700
A H 0.510
T H 0.341
R B 0.172
R C 0.273
K H 0.301
E S 0.429
K B 0.267
Y S 0.169
M B 0.452
P B 0.369
D B 0.529
L H 0.761
E H 0.933
A H 0.908
I H 0.925
K H 0.885
K H 0.896
E H 0.702
Y H 0.590
D H 0.667
H S 0.408
F E 0.502
T E 0.460
V A 0.424
E B 0.282
R E 0.463
V E 0.356
K E 0.174
END