PFRMAT SS TARGET T0189 METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-alpha-seeded.net METHOD This is a 4-layer network, with METHOD window units METHOD 5 15 METHOD 7 15 METHOD 9 15 METHOD 13 11 (1 ABCDEFGHIST ) METHOD The input amino acid frequencies were determined from METHOD alignment T0189.t2k-thin90.a2m.gz METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1) METHOD Counts were regularized to probabilities using METHOD /projects/compbio/lib/recode3.20comp METHOD Total sequence weight for alignment was 188 METHOD MODEL 1 M B 0.329 V E 0.587 L E 0.672 T E 0.694 V A 0.448 T S 0.269 L D 0.347 N B 0.223 P E 0.353 A E 0.369 L E 0.465 D E 0.420 R E 0.389 E E 0.384 I E 0.409 F E 0.340 I B 0.260 E H 0.253 D S 0.359 F B 0.342 Q C 0.495 V H 0.257 N S 0.444 R B 0.234 L E 0.270 Y E 0.238 R B 0.284 I E 0.219 N B 0.228 D H 0.197 L H 0.187 S B 0.186 K E 0.236 T E 0.244 Q E 0.350 M E 0.269 S C 0.270 P H 0.173 G S 0.269 G S 0.369 K H 0.509 G H 0.644 I H 0.844 N H 0.932 V H 0.933 S H 0.950 I H 0.956 A H 0.966 L H 0.906 S H 0.806 K H 0.724 L B 0.686 G T 0.479 V B 0.488 P E 0.272 S E 0.414 V E 0.460 A E 0.456 T A 0.230 G B 0.249 F H 0.153 V G 0.177 G D 0.236 G S 0.184 Y H 0.191 M H 0.343 G H 0.508 K H 0.782 I H 0.911 L H 0.926 V H 0.923 E H 0.940 E H 0.876 L H 0.734 R H 0.787 K H 0.738 I H 0.423 S H 0.345 K B 0.283 L S 0.302 I E 0.308 T E 0.373 T E 0.237 N H 0.166 F E 0.307 V E 0.508 Y E 0.460 V E 0.309 E B 0.240 G H 0.263 E S 0.332 T B 0.334 R E 0.218 E B 0.301 N E 0.298 I E 0.540 E E 0.728 I E 0.498 I E 0.620 D E 0.564 E E 0.432 K C 0.559 N H 0.323 K B 0.398 T S 0.569 I E 0.413 T E 0.466 A E 0.489 I E 0.557 N E 0.473 F E 0.373 P B 0.206 G B 0.136 P H 0.148 D H 0.211 V H 0.251 T H 0.504 D H 0.591 M H 0.567 D H 0.430 V H 0.681 N H 0.792 H H 0.752 F H 0.736 L H 0.778 R H 0.731 R H 0.701 Y H 0.615 K H 0.716 M H 0.838 T H 0.649 L H 0.453 S H 0.535 K S 0.523 V E 0.454 D G 0.426 C E 0.718 V E 0.824 V E 0.641 I T 0.305 S S 0.221 G S 0.186 S B 0.188 I B 0.216 P B 0.254 P H 0.223 G S 0.245 V B 0.338 N B 0.479 E H 0.734 G H 0.907 I H 0.909 C H 0.949 N H 0.969 E H 0.982 L H 0.954 V H 0.951 R H 0.964 L H 0.968 A H 0.934 R H 0.824 E H 0.765 R B 0.813 G T 0.622 V B 0.672 F E 0.639 V E 0.555 F E 0.651 V E 0.567 E E 0.404 Q I 0.312 T B 0.282 P S 0.302 R B 0.223 L H 0.353 L H 0.545 E H 0.655 R H 0.621 I H 0.649 Y H 0.732 E H 0.734 G H 0.565 P H 0.392 E H 0.384 F S 0.406 P E 0.380 N G 0.518 V E 0.626 V E 0.639 K E 0.497 P B 0.294 D E 0.308 L H 0.478 R H 0.795 G H 0.798 N H 0.842 H H 0.850 A H 0.847 S H 0.796 F H 0.548 L B 0.629 G S 0.588 V B 0.405 D B 0.166 L E 0.170 K S 0.224 T B 0.398 F H 0.575 D H 0.741 D H 0.788 Y H 0.903 V H 0.960 K H 0.969 L H 0.949 A H 0.930 E H 0.941 K H 0.921 L H 0.824 A H 0.689 E H 0.475 K B 0.349 S T 0.247 Q G 0.201 V E 0.727 S E 0.804 V E 0.655 V E 0.539 S E 0.386 Y D 0.165 E D 0.412 V H 0.385 K B 0.324 N T 0.258 D E 0.500 I E 0.520 V E 0.527 A E 0.407 T C 0.540 R H 0.429 E B 0.428 G S 0.302 V E 0.458 W E 0.514 L E 0.400 I B 0.331 R B 0.368 S B 0.285 K B 0.326 E B 0.445 E E 0.315 I E 0.415 D E 0.481 T E 0.449 S E 0.268 H C 0.561 L H 0.390 L B 0.334 G S 0.349 A H 0.443 G H 0.513 D H 0.779 A H 0.860 Y H 0.913 V H 0.919 A H 0.900 G H 0.944 M H 0.950 V H 0.891 Y H 0.895 Y H 0.856 F H 0.779 I H 0.642 K H 0.454 H B 0.458 G S 0.481 A B 0.440 N B 0.691 F H 0.681 L H 0.931 E H 0.921 M H 0.915 A H 0.918 K H 0.950 F H 0.927 G H 0.912 F H 0.915 A H 0.904 S H 0.847 A H 0.835 L H 0.818 A H 0.700 A H 0.510 T H 0.341 R B 0.172 R C 0.273 K H 0.301 E S 0.429 K B 0.267 Y S 0.169 M B 0.452 P B 0.369 D B 0.529 L H 0.761 E H 0.933 A H 0.908 I H 0.925 K H 0.885 K H 0.896 E H 0.702 Y H 0.590 D H 0.667 H S 0.408 F E 0.502 T E 0.460 V A 0.424 E B 0.282 R E 0.463 V E 0.356 K E 0.174 END