% SAM: /projects/compbio/bin/i686/hmmscore v3.3.2 (February, 2001) compiled 06/24/02_10:50:12 % (c) 1992-2001 Regents of the University of California, Santa Cruz % % Sequence Alignment and Modeling Software System % http://www.cse.ucsc.edu/research/compbio/sam.html % % ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- % R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: % Extension and analysis of the basic method, CABIOS 12:95-107, 1996. % K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting % remote protein homologies, Bioinformatics 14(10):846-856, 1998. % A. Krogh et al., Hidden Markov models in computational biology: % Applications to protein modeling, JMB 235:1501-1531, Feb 1994. % --------------------------------------------------------------------- % T0189.t2k-100-30-alpha Host: cc75 Thu Aug 15 15:41:06 2002 % karplus Dir: /projects/compbio/experiments/casp5/t0189 % --------------------------------------------------------------------- % Inserted Files: % Database Files: /projects/compbio/experiments/models.97/indexes/t2k.x-seqs,/projects/compbio/experiments/models.97/indexes/t2k.alphas % MODLIBMOD T0189.t2k-100-30-alpha T0189.t2k-100-30-alpha model number 1 % Calibration data for 6516 database sequences % 934 of 6516 scores > calibrate_threshold ( 0) used. trackmod T0189.t2k-w0.5.mod,T0189.t2k.alpha.mod trackcoeff 1.0,0.3 alphabet protein,ALPHA lambda 1.735465 tau 0.847861 sw 2 dpstyle 0 jumpinprob 1.000000 jumpoutprob 1.000000 subtractnull 4 FIMmethodscore -6 insertmethodscore 0 adjust_score 2 ENDMODLIBMOD