a2m2html output for file tmp.a2m

Citations (SAM, SAM-T99, HMMs)

R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting remote protein homologies, Bioinformatics 14(10):846-856, 1998.
A. Krogh et al., Hidden Markov models in computational biology: Applications to protein modeling, JMB 235:1501-1531, Feb 1994.

Sequence numbers correspond to the following labels:

- T0188 TM1816, T. maritima
- gi|15644560|ref|NP_229613.1|_1:124 (NC_000853) conserved hypothetical protein [Thermotoga maritima]
- gi|7450455|pir||C72206 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
- gi|4982398|gb|AAD36879.1|AE001819_2 (AE001819) conserved hypothetical protein [Thermotoga maritima]
- gi|21227089|ref|NP_633011.1|_1:121 (NC_003901) conserved protein [Methanosarcina mazei Goe1]
- gi|20905416|gb|AAM30683.1| (AE013325) conserved protein [Methanosarcina mazei Goe1]
- gi|14591186|ref|NP_143262.1|_41:164 (NC_000961) hypothetical protein [Pyrococcus horikoshii]
- gi|7519120|pir||A71011 hypothetical protein PH1383 - Pyrococcus horikoshii
- gi|3257806|dbj|BAA30489.1| (AP000006) 177aa long hypothetical protein [Pyrococcus horikoshii]
- gi|15679188|ref|NP_276305.1|_1:114 (NC_000916) conserved protein [Methanothermobacter thermautotrophicus] [Methanothermobacter thermautotrophicus str. Delta H]
- gi|7450448|pir||H69023 conserved hypothetical protein MTH1177 - Methanobacterium thermoautotrophicum (strain Delta H)
- gi|2622284|gb|AAB85666.1| (AE000886) conserved protein [Methanothermobacter thermautotrophicus str. Delta H]
- gi|14590689|ref|NP_142757.1|_1:108 (NC_000961) hypothetical protein [Pyrococcus horikoshii]
- gi|7450452|pir||A71132 hypothetical protein PH0822 - Pyrococcus horikoshii
- gi|3257232|dbj|BAA29915.1| (AP000003) 121aa long hypothetical protein [Pyrococcus horikoshii]
- gi|20093033|ref|NP_619108.1|_4:123 (NC_003552) conserved hypothetical protein [Methanosarcina acetivorans str. C2A] [Methanosarcina acetivorans C2A]
- gi|19918355|gb|AAM07588.1| (AE011136) conserved hypothetical protein [Methanosarcina acetivorans str. C2A] [Methanosarcina acetivorans C2A]
- gi|11499954|ref|NP_071200.1|_1:106 (NC_000917) conserved hypothetical protein [Archaeoglobus fulgidus]
- gi|7450447|pir||A69547 conserved hypothetical protein AF2377 - Archaeoglobus fulgidus
- gi|2650723|gb|AAB91292.1| (AE001112) conserved hypothetical protein [Archaeoglobus fulgidus]
- gi|15679186|ref|NP_276303.1|_1:118 (NC_000916) conserved protein [Methanothermobacter thermautotrophicus] [Methanothermobacter thermautotrophicus str. Delta H]
- gi|7450450|pir||F69023 conserved hypothetical protein MTH1175 - Methanobacterium thermoautotrophicum (strain Delta H)
- gi|12084364|pdb|1EO1|A Chain A, Solution Structure Of Hypothetical Protein Mth1175 From Methanobacterium Thermoautotrophicum
- gi|2622282|gb|AAB85664.1| (AE000886) conserved protein [Methanothermobacter thermautotrophicus str. Delta H]
- gi|20808301|ref|NP_623472.1|_1:120 (NC_003869) conserved hypothetical protein [Thermoanaerobacter tengcongensis]
- gi|20516904|gb|AAM25076.1| (AE013140) conserved hypothetical protein [Thermoanaerobacter tengcongensis]
- gi|14591046|ref|NP_143121.1|_1:114 (NC_000961) hypothetical protein [Pyrococcus horikoshii]
- gi|7519038|pir||E71066 hypothetical protein PH1227 - Pyrococcus horikoshii
- gi|3257644|dbj|BAA30327.1| (AP000005) 189aa long hypothetical protein [Pyrococcus horikoshii]
- gi|18310013|ref|NP_561947.1|_123:244 (NC_003366) probable transcriptional regulator [Clostridium perfringens]
- gi|18144692|dbj|BAB80737.1| (AP003189) probable transcriptional regulator [Clostridium perfringens str. 13]
- gi|14521223|ref|NP_126698.1|_1:109 (NC_000868) hypothetical protein [Pyrococcus abyssi]
- gi|7518207|pir||D75078 hypothetical protein PAB1692 - Pyrococcus abyssi (strain Orsay)
- gi|5458441|emb|CAB49929.1| (AJ248286) hypothetical protein [Pyrococcus abyssi]
- gi|14520973|ref|NP_126448.1|_1:124 (NC_000868) hypothetical protein [Pyrococcus abyssi]
- gi|7450451|pir||F75120 hypothetical protein PAB0517 - Pyrococcus abyssi (strain Orsay)
- gi|5458190|emb|CAB49679.1| (AJ248285) hypothetical protein [Pyrococcus abyssi]
- gi|21674099|ref|NP_662164.1|_1:120 (NC_002932) conserved hypothetical protein [Chlorobium tepidum TLS]
- gi|21647254|gb|AAM72506.1| (AE012887) conserved hypothetical protein [Chlorobium tepidum TLS]
- gi|11499955|ref|NP_071201.1|_1:120 (NC_000917) conserved hypothetical protein [Archaeoglobus fulgidus]
- gi|7450449|pir||B69547 conserved hypothetical protein AF2378 - Archaeoglobus fulgidus
- gi|2650717|gb|AAB91286.1| (AE001112) conserved hypothetical protein [Archaeoglobus fulgidus]
- gi|20093034|ref|NP_619109.1|_1:119 (NC_003552) conserved hypothetical protein [Methanosarcina acetivorans str. C2A] [Methanosarcina acetivorans C2A]
- gi|19918356|gb|AAM07589.1| (AE011136) conserved hypothetical protein [Methanosarcina acetivorans str. C2A] [Methanosarcina acetivorans C2A]
- gi|20808298|ref|NP_623469.1|_1:116 (NC_003869) conserved hypothetical protein [Thermoanaerobacter tengcongensis]
- gi|20516901|gb|AAM25073.1| (AE013140) conserved hypothetical protein [Thermoanaerobacter tengcongensis]
- gi|15668760|ref|NP_247559.1|_10:116 (NC_000909) conserved hypothetical protein [Methanococcus jannaschii] [Methanocaldococcus jannaschii]
- gi|2833520 sp|Q58000|Y580_METJA Hypothetical protein MJ0580
- gi|2128388|pir||D64372 hypothetical protein MJ0580 - Methanococcus jannaschii
- gi|1591287|gb|AAB98571.1| (U67506) conserved hypothetical protein [Methanococcus jannaschii] [Methanocaldococcus jannaschii]
- gi|15896415|ref|NP_349764.1|_1:117 (NC_003030) Uncharacterized conserved protein [Clostridium acetobutylicum]
- gi|15026234|gb|AAK81104.1|AE007811_11 (AE007811) Uncharacterized conserved protein [Clostridium acetobutylicum]
- gi|21227090|ref|NP_633012.1|_1:117 (NC_003901) conserved protein [Methanosarcina mazei Goe1]
- gi|20905417|gb|AAM30684.1| (AE013325) conserved protein [Methanosarcina mazei Goe1]
- gi|15922339|ref|NP_378008.1|_1:120 (NC_003106) 122aa long conserved hypothetical protein [Sulfolobus tokodaii]
- gi|15623128|dbj|BAB67117.1| (AP000988) 122aa long conserved hypothetical protein [Sulfolobus tokodaii]
- gi|20090930|ref|NP_617005.1|_294:399 (NC_003552) cation efflux system protein [Methanosarcina acetivorans str. C2A] [Methanosarcina acetivorans C2A]
- gi|19916011|gb|AAM05485.1| (AE010895) cation efflux system protein [Methanosarcina acetivorans str. C2A] [Methanosarcina acetivorans C2A]
- gi|15644045|ref|NP_229094.1|_3:109 (NC_000853) conserved hypothetical protein [Thermotoga maritima]
- gi|7450454|pir||A72272 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
- gi|4981848|gb|AAD36364.1|AE001784_6 (AE001784) conserved hypothetical protein [Thermotoga maritima]
- gi|18978397|ref|NP_579754.1|_1:109 (NC_003413) hypothetical protein [Pyrococcus furiosus DSM 3638]
- gi|18894237|gb|AAL82149.1| (AE010295) hypothetical protein [Pyrococcus furiosus DSM 3638]
- gi|13541385|ref|NP_111073.1|_1:118 (NC_002689) Uncharacterized conserved protein [Thermoplasma volcanium]
- gi|14324769|dbj|BAB59696.1| (AP000992) hypothetical protein [Thermoplasma volcanium]
- gi|7520740|pir||T10097_4:103 nifX protein - Methanococcus maripaludis
- gi|1666890|gb|AAC45519.1| (U75887) NifX [Methanococcus maripaludis]
- gi|11493649|gb|AAG35590.1|AF200742_5_108:213 (AF200742) NifY protein [Azoarcus sp. BH72]
- gi|15679183|ref|NP_276300.1|_297:399 (NC_000916) possible cation transporter [Methanothermobacter thermautotrophicus] [Methanothermobacter thermautotrophicus str. Delta H]
- gi|7482092|pir||C69023 conserved hypothetical protein MTH1172 - Methanobacterium thermoautotrophicum (strain Delta H)
- gi|2622279|gb|AAB85661.1| (AE000886) possible cation transporter [Methanothermobacter thermautotrophicus str. Delta H]
- gi|16082348|ref|NP_394825.1|_3:111 (NC_002578) conserved hypothetical protein [Thermoplasma acidophilum]
- gi|10640713|emb|CAC12491.1| (AL445067) conserved hypothetical protein [Thermoplasma acidophilum]
- gi|128328 sp|P14887|NIFX_AZOVI_20:121 NIFX PROTEIN
- gi|95057|pir||C32055 nifX protein - Azotobacter vinelandii
- gi|142353|gb|AAA64718.1| (M20568) nifX protein [Azotobacter vinelandii]
- gi|20091755|ref|NP_617830.1|_6:112 (NC_003552) conserved hypothetical protein [Methanosarcina acetivorans str. C2A] [Methanosarcina acetivorans C2A]
- gi|19916937|gb|AAM06310.1| (AE010996) conserved hypothetical protein [Methanosarcina acetivorans str. C2A] [Methanosarcina acetivorans C2A]
- gi|2183306|gb|AAC35196.1|_1:104 (AF003700) NifX [Cyanothece sp. PCC 8801]
- gi|11498276|ref|NP_069502.1|_1:97 (NC_000917) conserved hypothetical protein [Archaeoglobus fulgidus]
- gi|7450456|pir||D69333 conserved hypothetical protein AF0668 - Archaeoglobus fulgidus
- gi|2649948|gb|AAB90572.1| (AE001058) conserved hypothetical protein [Archaeoglobus fulgidus]
- gi|20094677|ref|NP_614524.1|_1:107 (NC_003551) Uncharacterized conserved protein [Methanopyrus kandleri AV19]
- gi|19887841|gb|AAM02454.1| (AE010414) Uncharacterized conserved protein [Methanopyrus kandleri AV19]
- gi|14590737|ref|NP_142807.1|_2:106 (NC_000961) hypothetical protein [Pyrococcus horikoshii]
- gi|7450453|pir||H71076 hypothetical protein PH0880 - Pyrococcus horikoshii
- gi|3257291|dbj|BAA29974.1| (AP000004) 116aa long hypothetical protein [Pyrococcus horikoshii]
- gi|18313529|ref|NP_560196.1|_1:121 (NC_003364) hypothetical protein [Pyrobaculum aerophilum]
- gi|18161070|gb|AAL64378.1| (AE009890) hypothetical protein [Pyrobaculum aerophilum]
- gi|15641335|ref|NP_230967.1|_1:90 (NC_002505) hypothetical protein [Vibrio cholerae]
- gi|11345620|pir||A82214 hypothetical protein VC1323 [imported] - Vibrio cholerae (group O1 strain N16961)
- gi|9655813|gb|AAF94481.1| (AE004212) hypothetical protein [Vibrio cholerae]
- gi|20808296|ref|NP_623467.1|_2:83 (NC_003869) conserved hypothetical protein [Thermoanaerobacter tengcongensis]
- gi|20516899|gb|AAM25071.1| (AE013140) conserved hypothetical protein [Thermoanaerobacter tengcongensis]
- gi|9081903|gb|AAF82634.1|AF167538_1_1:80 (AF167538) NifB [Trichodesmium sp. IMS101]

              10        20        30         40           50           
              |         |         |          |            |           
   1 MIIAIPVSENRGKDSPISEHFGRAPYFAFVKV.KNNAIADISVEENPL...AQD.....HVHGAV
   2 MIIAIPVSENRGKDSPISEHFGRAPYFAFVKV.KNNAIADISVEENPL...AQD.....HVHGAV
   3 MKVCIPTKDNKGMDGTVEQHFGKAPTYTILDT.ETGEV---SVIPNTS...EHM.....GGVDLP
   4 MRLIVATVRG-GLDDYVNQSFGRTPTFTIVDVdENGNIVNVQVVENPG...YSQpr...GAGVTT
   5 MKICIPVMEERGMDSKVSEHFGKTPLFAFYDD.EVNEL---EIIKIEG...RHT.....GGRLTP
   6 MRVAIPAEDDRGIKSNVSKHFGRSRYFVFVDI.EGEDVKNVEVVEVPF...EE-.....HGPGDL
   7 MKVCIPTRDNNGMEGAVEQHFGKALTYTILDT.NSGEI---FVVPNTS...EHM.....GGVELP
   8 ------------MDDYVCEHFGKAESFTIYDT.ETGEV---KVVRNTS...EHF.....GGVGYP
   9 MKIAIASSGT-DLGSEVSRFFGRAPYFMIVEM.KKGNIESSEVIENPS...ASAsg...GAGIRT
  10 MKVAVSSQGK-TLESHVDTRFGRAQFFIIVDT.ETMDYKVVDNLAV-A...QSS.....GAGTRA
  11 MRIAVPTNGG-GLEDTVAPVFARAPAFAIVDV.ENGEIKNVRVIQNSA...STAag...GAGPMA
  12 MRICFPVKNNEGVKSVPYGHFGTAPTFVICDL.EKDEVTNVG--NGDL...GHE.....HGKCQP
  13 MRIAVPTNGG-GLEDTVAPVFARAPAFAIVDV.ENGEIKNVRVIQNPA...STAag...GAGPMA
  14 MRFIVATING-GLDDRVNQAFGRTPTFTIVDVdENGNIVNVQVVPNPG...YSQpr...GAGVTA
  15 MKIIIPLDEYSGPGSQVCDHFGSAPFFATVDM.VSGEVSIID--NQNA...HHD.....HGQCTP
  16 MRIAATTLKG-GIDDIVTPQFGRTATFTIVDY.DGG-VKNVEVVENRA...ASQss...GAGIAA
  17 MKICISACGK-DLDSEVDPQFGRCNYFVIIEP.KVGSVTSIKN-PGSE...APS.....GAGIRA
  18 MRIAVASEGKE-----VSMHFGHCEGFWIFDV.EGKEIKNSSFLPNPG...---.....HRPGFL
  19 MKIALPIDNNR-----LSPHFGRCEKFMIVEI.ENGEIKNKEIIENTA...RNGmh...GVGTTS
  20 MKIAIPNNEN-----MINQHFGKSKSFIITTL.EDDKIVNAEKIS-SV...ELL.....HQHQGL
  21 MKICISACGK-DPDSEVDPQFGRCNYFLVIDP.DAGSISSIKN-PGSE...ASG.....GAGIKA
  22 MRIAIPVTNG------YVEGPGEALKVQIYEV.EGQEYKLIEEYENPA...LKAma...VRGAHM
  23 MKIAVPVLMQEGLHSKVSRHFSKAPYFIFIEL.ENNDIISWDVSENPA...AGLek...KKGLKA
  24 -RVAIPSVGK-DLSSMVSDRFARAEYFIIYDT.ESGNV---EVVENTI...ADAh....GTGPKV
  25 MKIAIPTNGG-GREDTVAPLFARAPAFYIAEVdEKGNIISEKVIQNPA...ATAgr...GAGPIA
  26 MKIAVAVSDNK------VGGPGESQYVYIYDV.KDGNADLLEKYENPA...MHAyr...AKGLQM
  27 LKVAIASTDGV----NVNMHFGAATHFFIFEI.KDNVAEFLEFRGNPT...KHIkd...HTDRWN
  28 LKVAVASNTGE----LLDGHFGSCARFLVYQV.SEEGVWLIDVRSTEG...TDD.....ADDRNV
  29 VVVAVPLADNHGMESRISTHFGRADSFLIART.RRGEILDYRIIENSG...KSLrt...KRGIRA
  30 MKILIPVLEKNGETSKISPHFGRAPYLALVSV.LDHRIVSIDFIAGEG...PHAde8ekKAASSI
  31 LKVAFASSDRE----LVDQHFGSSRSFAIYGV.NPERSQLLSVVEFGE...LEQdg...NEDKLA
  32 MKVAVISTDGK----VINQHFGKASRFYIFEI.GEGKIQFLEVRECTP...LCG.....SADYGN
  33 MKVAFTTSDNV----HINAHFGWAQQIAVYDV.SSEGFTYDKTLEFSGdlkADG.....NEDKLV
  34 MRVAMPILDQ-KDGLRVAPHFGKARRFYILDL.ESGKS---SVVEIPE...AEK.....GRGRMI
  35 MRVAVMVEGDG-----VSSRFARAPEIRVYEV.QDDDVELVESTSNPV...ANLpr...GAGRQI
  36 IKIAIPTSKG-GLEDKVHESLVRAETFTLVEV.KDGKIERIEVVENPH...KNEpy...GAGSKV
  37 MKIAIACD---LEGNVFPGHFAHAPKYRIYQY.ENGQLRLLEERENPL...GSLpdydeHHGHEI
  38 MILAVPSRHG-----VPFNHFAKAPSFSVIDS.NTQQLQTEFHLELDP...SKSc....GKKSAI
  39 VKVAVGSNDKV---HLSDKHFGMSKFFIIFEVdENSNFKKVEERENPY...GDG.....KHRHAE
  40 ------------------QHFGHAKEFMIYEV.DGVKARFIAHRKVDH...YCLggy..GEEGSL


        60             70        80        90          100       110   
        |              |         |         |            |         |   
   1 PNFVKEK.....GAELVIVRGIGRRAIAAFEAMGVKVIKGASG..T.VEEVVNQYLSGQLKDSDY
   2 PNFVKEK.....GAELVIVRGIGRRAIAAFEAMGVKVIKGASG..T.VEEVVNQYLSGQLKDSDY
   3 PEFLRKN.....GVEIMLCGGLGYKAVKMFESCGISVFVGAGG..T.VQDTIEAWRAGQFNNASA
   4 AQFCIDQ.....GADVVISGQFGPNSSGVLQAAGIRLVSAPPTm.T.VREAVEAYLRGELTQAIM
   5 AEIVVNS.....DADLLICTNMGSKAINLLRTHGVDVLMGARG..T.VAETLNLLKKGELREDAD
   6 PNFIKDH.....GAKIVLTYGIGRRAIEYFNSLGISVVTGVYG..R.ISDVIKAFIGGKLK----
   7 PELLRKY.....GVEIMLCAGLGYRAVKMFESYGIDVFVGAGG..T.VQDAVEAWKANQLHSASA
   8 PELIKSA.....GADVVLCSGMGARAIAMFRRFGIKVYMGASG..T.VRDAIEQFLAGKLVEADE
   9 AQIIANN.....GVKAVIASSPGPNAFEVLNELGIKIYRATGT..S.VEENLKLFTEGNLEEIRS
  10 AQTLLDE.....GIEALISSNVGPNAMEVFKAAEIPVYKAVDK..D.VKTNIELLKKGELEKITE
  11 VQMLINE.....GVDTIVAPQVGPNAMGAIQAAGIRVYTVPPGt.K.VEDAVKSAISGSAPQTT-
  12 IKALSGE.....VVDAVVVGGIGAGAISKLNSMGIKVYKAIEG..D.IEANLEALKKGELKEFSS
  13 VQMLINE.....GVDTIVAPQVGPNAMGAIQAAGIKLYTVAPGt.K.VEDAVKSVISGS------
  14 AQFCIDQ.....GADVVIAGQFGPNSYGVLQAAGMKFVSAPPTm.T.VKEAIEAYLRGELTQAIM
  15 ADSLADM.....GASAIVVKGIGPRAAAKMQSLGMDAYMAGSAr.T.LADVIEQFGSGILNKLDV
  16 AQMLVDK.....KVEVLLTGHVGPKAMNVLRAAGIRAFVAEGL..R.VRDAVEKLLKGELEEITA
  17 AEAVVGA.....GIDILLTGSVGPNSFSILSEAGVETHYGVRG..K.VAFALHEYQSGKLAVLER
  18 PEFLKNH.....GVDCVISGGMGMSAIELFNNYGIDVITGAEG..E.VDKVVKKYLEVTLMASNS
  19 ASLIANM.....GVNAIIVQNIGPKAYSVFKQLGIDVYKANTT..S.IDECIKLFLEGKLEK---
  20 ADLLVKN.....GVDVVIVGGIGAGALTALRQKGFKVIRGASG..I.YTEVIKEYINGNLEDKNV
  21 AEAVVDA.....GADVLLTGSLGPNSFSVLSEAGIEIYSGVRG..T.VSSSLREYQSGKLSPLKS
  22 LKSAIDR.....GVNAVIVAEMGPPGLRLLQNYKIKAYLAEGL..D.VKTAIEKFIKGELPELIK
  23 AEFLKDQ.....GVNVLIAGEIGEAPFHTLRDNFVKLLQMPEEieD.VEQVVKK-----------
  24 VQSLVSK.....GVEYLIASNVGRNAFETLKAAGVKVYRFEGG..T.VQEAIDAFSEGRLEEL--
  25 VQMLINE.....GVDTIVAPQVVPNALGAIQAAGIRVYYVTPG..TpVEEAIKVATTG-------
  26 LASAISR.....GVDAIILSELGRPGYSYLKD-RIKVYITPEV..E.VERAIKDVINGRIPVATA
  27 YALELLK.....DCGAIFCSRMGDHPKSVLEGKGMKVVMT-GN..T.LKDALKEF----------
  28 ARAALIN.....DCHLAYMQSIGGPAAAKIVRAGIHPVKFPVG..G.EARQVLAQLQGTLKR---
  29 AELLKDE.....NIDVLVIEKLSEGPELLFSDYLLGKVPPEGS..S.LEEVIK------------
  30 HQKVIDM.....HPDVIIASRIGPRAYNDFSNAGIRIMSARGE..T.ISQLIS------------
  31 RKIDLLD.....GCVAVYCCACGASAVRQLMAIGVQPIKVSEGa.R.IAELIEAL----------
  32 PEEVLNKti6ilDCEALLCARIGSKPQEELRKKGIEPIEAPYL..-.IDEALNNILTG-------
  33 PKIEALE.....GCTIIYVAAIGGSAAARLIRKNVTPIKARSEsdK.IEELLGEL----------
  34 AEILREK.....GVSVVVCRNIGEGALERLKEAGIEVRKTDKS..N.PDDAVE------------
  35 LTVLTEL.....NVEATVAARYGPNALQGLKAQGIKAYVAEPGt.D.PEEAALKAARGELP----
  36 AIFLVNN.....GVNILLTPMDCPKGKAILEAGGVKIIKVKQGk.S.VKEVIEAF----------
  37 TRLNADFq23lpDVDVIIAGGACQTSYRYFTSQGVKMLFTEPV..E.V-----------------
  38 LHQLRHY.....QIEGVAVSQIGQSMLQALFNAGIRVYALPRG..-.------------------
  39 TEEIMEVlk...DCDVLIGKSMGKESQRRIK------------..-.------------------
  40 ENIIKAIs....DCKAVFVSKIGESPKEKVRNAGLKVVETYDV..-.------------------


          120    
           |    
   1 EVHDHHHHEHH
   2 EVHDHHHHEHH
   3 ENTCAEHEHHH
   4 GQGGMGRG---
   5 PCNG-------
   6 -----------
   7 ENTCAEHDHH-
   8 AMGCSHHH---
   9 PGSG-------
  10 ATNHGHHHH--
  11 -----------
  12 THTCNHDGCSH
  13 -----------
  14 GQGGGGRG---
  15 QQTCQGHG---
  16 PSSGMGK----
  17 PNASTHSG---
  18 PCEEHKSHGHY
  19 -----------
  20 VCNHHGEHSH-
  21 PNASSH-----
  22 PTHEEHHHHHH
  23 -----------
  24 -----------
  25 -----------
  26 PTHEHGMHEH-
  27 -----------
  28 -----------
  29 -----------
  30 -----------
  31 -----------
  32 -----------
  33 -----------
  34 -----------
  35 -----------
  36 -----------
  37 -----------
  38 -----------
  39 -----------
  40 -----------