PFRMAT SS
TARGET T0187
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-alpha-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	   11 (1 ABCDEFGHIST )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0187.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 29
METHOD
MODEL 1
P B 0.297
V B 0.425
P B 0.370
D B 0.333
E H 0.647
N H 0.691
T H 0.839
I H 0.933
K H 0.946
T H 0.947
T H 0.949
R H 0.950
R H 0.966
V H 0.932
L H 0.829
E H 0.893
L H 0.660
V I 0.385
D H 0.477
Q S 0.881
L B 0.414
N C 0.571
E H 0.414
N S 0.599
D E 0.357
T E 0.637
V E 0.725
L E 0.782
F E 0.813
L E 0.536
L A 0.293
S D 0.302
G D 0.197
G S 0.333
G C 0.168
S E 0.273
S E 0.275
L E 0.360
F E 0.286
E B 0.322
L B 0.360
P B 0.435
L H 0.235
E G 0.447
G S 0.664
V B 0.539
S B 0.651
L H 0.724
E H 0.930
E H 0.886
I H 0.906
Q H 0.931
K H 0.956
L H 0.947
T H 0.914
S H 0.917
A H 0.945
L H 0.908
L H 0.783
K H 0.644
S B 0.536
G S 0.569
A B 0.578
S B 0.741
I H 0.607
E H 0.924
E H 0.924
I H 0.926
N H 0.890
T H 0.915
V H 0.920
R H 0.874
K H 0.857
H H 0.836
L H 0.715
S H 0.797
Q H 0.658
V H 0.440
K H 0.357
G S 0.294
G H 0.402
R H 0.685
F H 0.862
A H 0.834
E H 0.790
R H 0.658
V S 0.404
F B 0.362
P S 0.335
A B 0.405
K E 0.444
V A 0.504
V E 0.389
A E 0.695
L E 0.675
V E 0.486
L A 0.229
S B 0.388
D S 0.354
V B 0.425
L G 0.200
G D 0.226
D C 0.324
R B 0.527
L I 0.347
D H 0.537
V H 0.400
I H 0.282
A S 0.256
S C 0.220
G C 0.334
P B 0.196
A S 0.210
W B 0.401
P B 0.442
D E 0.588
S I 0.412
S S 0.287
T B 0.587
S H 0.673
E H 0.877
D H 0.888
A H 0.930
L H 0.956
K H 0.960
V H 0.949
L H 0.894
E H 0.850
K H 0.709
Y B 0.502
G S 0.383
I E 0.218
E S 0.312
T C 0.448
S B 0.648
E H 0.690
S H 0.810
V H 0.848
K H 0.909
R H 0.923
A H 0.880
I H 0.776
L H 0.584
Q B 0.299
E H 0.268
T H 0.306
P H 0.467
K H 0.332
H H 0.317
L H 0.253
END