# List of top-scoring protein chains for t2k-100-30-stride-ebghtl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1je0A 236 9.21e-02 c.56.2.1 66581 1lx7A 253 2.51e-01 1k3fA 253 3.00e-01 c.56.2.1 68105 1e39A 571 5.27e-01 1qjdA a.138.1.3 19694 c.3.1.4 30431 d.168.1.1 42314 1qjdA 571 6.00e-01 1qjdA a.138.1.3 19695 c.3.1.4 30432 d.168.1.1 42315 1huxA 270 1.70e+00 1huxA c.55.1.5 61278 2pth 193 1.86e+00 2pth c.56.3.1 33793 1bs9 207 1.96e+00 1bs9 c.23.9.1 31330 1g66A 207 1.96e+00 1bs9 c.23.9.1 31329 1ex2A 189 1.99e+00 1ex2A c.51.4.2 33225 1jeyB 565 2.44e+00 1jeqB e.31.1.2 62925 1dosA 358 2.49e+00 1dosA c.1.10.2 29175 1jeqB 565 2.79e+00 1jeqB e.31.1.2 62922 2cevA 299 2.81e+00 1d3vA c.42.1.1 32576 1hdhA 536 3.12e+00 c.76.1.2 65805 1b57A 358 3.24e+00 1dosA c.1.10.2 29177 1geqA 248 3.32e+00 2tysA c.1.2.4 28589 1ir6A 424 4.06e+00 1rlaA 323 4.12e+00 1d3vA c.42.1.1 32561 1f5sA 211 4.14e+00 1f5sA c.108.1.4 59656 1j97A 211 4.14e+00 1f5sA c.108.1.4 62753 1l7mA 211 4.17e+00 1prxA 224 4.58e+00 1prxA c.47.1.10 33076 1d3vA 323 4.96e+00 1d3vA c.42.1.1 32559 1prxB 224 5.43e+00 1prxA c.47.1.10 33077 1jmkC 230 5.57e+00 1fjgI 128 5.67e+00 1fjfI d.14.1.1 37559 1bouB 302 5.83e+00 1bouB c.56.6.1 33859 1jfvA 131 6.20e+00 c.44.1.1 66654 2act 220 6.43e+00 1cs8A d.3.1.1 37002 1jmxA 494 6.74e+00 a.3.1.7 66901 a.3.1.7 66902 b.1.1.6 66903 b.1.1.6 66904 b.61.4.1 66905 1iexA 605 6.80e+00 c.1.8.7 66127 c.23.11.1 66128 1qd1A 325 7.07e+00 1qd1A d.58.34.1 39493 d.58.34.1 39494 1erv 105 7.25e+00 1erv c.47.1.1 32743 1b87A 181 7.38e+00 1b87A d.108.1.1 40797 1jf8A 131 7.46e+00 c.44.1.1 66621 1erw 105 8.17e+00 1erv c.47.1.1 32745 1oasA 322 8.49e+00 1oasA c.79.1.1 35293 1fcjA 322 8.56e+00 1oasA c.79.1.1 35289 1ex1A 605 8.67e+00 1ex1A c.1.8.7 29013 c.23.11.1 31347 1qupA 222 8.71e+00 1qupA b.1.8.1 22301 d.58.17.1 39352 1iae 200 8.89e+00 1iae d.92.1.8 40311 1cp2A 269 9.11e+00 1cp2A c.37.1.10 32269 1dih 273 9.52e+00 1drw c.2.1.3 30056 d.81.1.3 39971 1ast 200 1.01e+01 1iae d.92.1.8 40310 1iab 200 1.01e+01 1iae d.92.1.8 40312 1ap8 213 1.02e+01 1ap8 d.86.1.1 40151 1hnoA 280 1.03e+01 1hnoA c.14.1.3 61095 1e69B 322 1.06e+01 1e69B c.37.1.12 32377 1d5yA 292 1.30e+01 1d5yA a.4.1.8 16055 a.4.1.8 16056 d.60.1.2 39532 1a8h 500 1.32e+01 1a8h a.27.1.1 16922 c.26.1.1 31589 1dctA 324 1.32e+01 6mhtA c.66.1.10 34244 1jq3A 296 1.40e+01 c.66.1.17 67079 1qtrA 317 1.41e+01 1qtrA c.69.1.7 34660 1hnuA 280 1.48e+01 1hnoA c.14.1.3 61096 1mdiA 105 1.51e+01 1erv c.47.1.1 32755 1trb 320 1.54e+01 1trb c.3.1.5 30529 c.3.1.5 30530 1af7 274 1.58e+01 1af7 a.58.1.1 17928 c.66.1.8 34203 1esc 306 1.66e+01 1esc c.23.10.1 31334 1jj7A 260 1.73e+01 c.37.1.12 63114 1ppo 216 1.77e+01 1cs8A d.3.1.1 37020 1drw 273 1.82e+01 1drw c.2.1.3 30057 d.81.1.3 39972 1hi9A 274 1.84e+01 1hi9A c.99.1.1 61063 1lehA 364 1.84e+01 1bw9A c.2.1.7 30268 c.58.1.1 33916 1g291 372 1.86e+01 1g291 1inlA 296 1.90e+01 c.66.1.17 66220 1prr 173 1.96e+01 1prs b.11.1.1 23623 b.11.1.1 23624 1c3pA 375 2.06e+01 1c3pA c.42.1.2 32606 1k6wA 426 2.11e+01 b.92.1.2 68236 c.1.9.5 68237 1ihvA 52 2.13e+01 1ihvA b.34.7.1 24629 1eulA 994 2.16e+01 1eulA f.2.1.10 43726 1ctn 540 2.20e+01 1ctn b.1.1.5 21876 c.1.8.5 29005 d.26.3.1 38439 1k9sA 237 2.21e+01 c.56.2.1 68359 1qfjA 232 2.30e+01 1qfjA b.43.4.2 25655 c.25.1.1 31545 1aiu 105 2.33e+01 1erv c.47.1.1 32746 1bdfA 235 2.40e+01 1bdfA d.74.3.1 39727 d.181.1.1 42602 1ig3A 263 2.47e+01 1ig3A b.82.6.1 62358 c.100.1.1 62359 1gh2A 107 2.56e+01 1erv c.47.1.1 60515 1b4kA 337 2.62e+01 1b4kA c.1.10.3 29184 1jk7A 323 2.68e+01 1auiA d.159.1.3 63144 1fjmA 330 2.69e+01 1auiA d.159.1.3 42082 1eqjA 511 2.72e+01 1ejjA c.105.1.1 59495 c.76.1.3 59496 1edqA 540 2.73e+01 1ctn b.1.1.5 21873 c.1.8.5 29002 d.26.3.1 38436 1ecpA 238 2.75e+01 1ecpA c.56.2.1 33775 1ejjA 511 2.83e+01 1ejjA c.105.1.1 59422 c.76.1.3 59423 1chuA 540 2.87e+01 1chuA a.7.3.1 16325 c.3.1.4 30424 d.168.1.1 42307 1dr8B 344 2.88e+01 1cnzA c.77.1.1 35052 1uby 367 2.89e+01 1uby a.128.1.1 19435 1g97A 459 2.90e+01 1fwyA b.81.1.4 60394 c.68.1.5 60395 1i35A 95 2.91e+01 d.15.1.5 66017 1prs 173 2.98e+01 1prs b.11.1.1 23625 b.11.1.1 23626 2tysA 268 3.01e+01 2tysA c.1.2.4 28572 1azwA 313 3.01e+01 1qtrA c.69.1.7 34658 1bc5A 269 3.03e+01 1af7 a.58.1.1 17929 c.66.1.8 34204 1ceo 343 3.08e+01 1ceo c.1.8.3 28808 1bksA 268 3.13e+01 2tysA c.1.2.4 28585 1i58A 189 3.17e+01 1b3qA d.122.1.3 61773 1cec 343 3.21e+01 1ceo c.1.8.3 28809 1cz1A 394 3.23e+01 1cz1A c.1.8.3 28839 1foaA 348 3.25e+01 1foaA c.68.1.10 59929 4kbpA 432 3.32e+01 4kbpA b.1.12.1 22345 d.159.1.1 42064 1dz3A 130 3.34e+01 1dz3A c.23.1.1 31105 1eqcA 394 3.38e+01 1cz1A c.1.8.3 28811 1fo8A 343 3.40e+01 1foaA c.68.1.10 59927 1hm9A 468 3.41e+01 b.81.1.4 65866 c.68.1.5 65867 1cnzA 363 3.45e+01 1cnzA c.77.1.1 35061 1kuh 132 3.48e+01 1kuh d.92.1.1 40258 1avpA 204 3.48e+01 1avpA d.3.1.7 37132 1mjhA 162 3.49e+01 1mjhA c.29.1.2 31639 1qhtA 775 3.56e+01 1tgoA c.55.3.5 33722 e.8.1.1 43011 1qopA 268 3.57e+01 2tysA c.1.2.4 28570 1sup 275 3.58e+01 1gci c.41.1.1 32510 1c7kA 132 3.58e+01 1kuh d.92.1.1 59078 1qmpA 130 3.65e+01 1dz3A c.23.1.1 31106 1d4bA 122 3.65e+01 1d4bA d.15.2.1 37638 1qpoA 284 3.68e+01 1qpoA c.1.17.1 29561 d.41.2.1 38597 1gesA 450 3.70e+01 3grs c.3.1.5 30473 c.3.1.5 30474 d.87.1.1 40168 1eypA 222 3.70e+01 1eypA d.36.1.1 38536 1dcjA 81 3.84e+01 1dcjA d.68.3.1 59115 1jepA 222 3.96e+01 d.36.1.1 66612 1eyqA 222 3.96e+01 1eypA d.36.1.1 38534