# List of top-scoring protein chains for t2k-100-30-dssp_ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1je0A 236 1.72e-01 c.56.2.1 66581 1bouB 302 3.63e-01 1bouB c.56.6.1 33859 1ex2A 189 3.71e-01 1ex2A c.51.4.2 33225 1k3fA 253 4.73e-01 c.56.2.1 68105 1lx7A 253 4.74e-01 1azwA 313 6.00e-01 1qtrA c.69.1.7 34658 1prxA 224 9.54e-01 1prxA c.47.1.10 33076 1prxB 224 9.79e-01 1prxA c.47.1.10 33077 1jmxA 494 1.25e+00 a.3.1.7 66901 a.3.1.7 66902 b.1.1.6 66903 b.1.1.6 66904 b.61.4.1 66905 1jeqB 565 1.26e+00 1jeqB e.31.1.2 62922 1dosA 358 1.28e+00 1dosA c.1.10.2 29175 1jeyB 565 1.72e+00 1jeqB e.31.1.2 62925 2pth 193 1.81e+00 2pth c.56.3.1 33793 1qtrA 317 1.94e+00 1qtrA c.69.1.7 34660 1jmkC 230 1.94e+00 1cp2A 269 2.24e+00 1cp2A c.37.1.10 32269 1drw 273 2.37e+00 1drw c.2.1.3 30057 d.81.1.3 39972 1qopA 268 2.76e+00 2tysA c.1.2.4 28570 1e39A 571 2.82e+00 1qjdA a.138.1.3 19694 c.3.1.4 30431 d.168.1.1 42314 1qjdA 571 2.87e+00 1qjdA a.138.1.3 19695 c.3.1.4 30432 d.168.1.1 42315 1rgs 288 3.64e+00 1rgs b.82.3.2 28146 b.82.3.2 28147 1jq3A 296 4.07e+00 c.66.1.17 67079 1inlA 296 4.51e+00 c.66.1.17 66220 2act 220 4.80e+00 1cs8A d.3.1.1 37002 2tysA 268 5.20e+00 2tysA c.1.2.4 28572 1arzC 273 5.74e+00 1drw c.2.1.3 30061 d.81.1.3 39976 1broA 277 5.83e+00 1brt c.69.1.12 34700 1d5yA 292 6.24e+00 1d5yA a.4.1.8 16055 a.4.1.8 16056 d.60.1.2 39532 1b57A 358 6.77e+00 1dosA c.1.10.2 29177 1brt 277 6.87e+00 1brt c.69.1.12 34699 1b63A 333 6.96e+00 1b63A d.14.1.3 37566 d.122.1.2 41107 1g7eA 122 7.01e+00 1g7eA c.47.1.7 33055 1dih 273 7.50e+00 1drw c.2.1.3 30056 d.81.1.3 39971 1ast 200 7.56e+00 1iae d.92.1.8 40310 1iae 200 7.56e+00 1iae d.92.1.8 40311 1iab 200 7.59e+00 1iae d.92.1.8 40312 1dr8B 344 7.75e+00 1cnzA c.77.1.1 35052 1iexA 605 7.91e+00 c.1.8.7 66127 c.23.11.1 66128 1bksA 268 7.96e+00 2tysA c.1.2.4 28585 1huxA 270 8.38e+00 1huxA c.55.1.5 61278 1hdhA 536 8.41e+00 c.76.1.2 65805 1erw 105 8.49e+00 1erv c.47.1.1 32745 1hw7A 255 8.71e+00 1i7fA d.193.1.1 61297 1fjgI 128 1.00e+01 1fjfI d.14.1.1 37559 2cevA 299 1.06e+01 1d3vA c.42.1.1 32576 1hyeA 313 1.10e+01 2cmd c.2.1.5 61400 d.162.1.1 61401 3ladA 476 1.11e+01 1lvl c.3.1.5 30573 c.3.1.5 30574 d.87.1.1 40208 1sup 275 1.16e+01 1gci c.41.1.1 32510 1c4xA 285 1.18e+01 1c4xA c.69.1.10 34684 1f5sA 211 1.28e+01 1f5sA c.108.1.4 59656 1j97A 211 1.28e+01 1f5sA c.108.1.4 62753 1ap8 213 1.28e+01 1ap8 d.86.1.1 40151 1l7mA 211 1.32e+01 1erv 105 1.36e+01 1erv c.47.1.1 32743 1af7 274 1.43e+01 1af7 a.58.1.1 17928 c.66.1.8 34203 1ex1A 605 1.48e+01 1ex1A c.1.8.7 29013 c.23.11.1 31347 1qd1A 325 1.50e+01 1qd1A d.58.34.1 39493 d.58.34.1 39494 1bdfA 235 1.51e+01 1bdfA d.74.3.1 39727 d.181.1.1 42602 1dctA 324 1.56e+01 6mhtA c.66.1.10 34244 1a8h 500 1.58e+01 1a8h a.27.1.1 16922 c.26.1.1 31589 1avpA 204 1.60e+01 1avpA d.3.1.7 37132 1fcjA 322 1.65e+01 1oasA c.79.1.1 35289 1geqA 248 1.66e+01 2tysA c.1.2.4 28589 1aa2 108 1.68e+01 1bkrA a.40.1.1 17395 1jj7A 260 1.69e+01 c.37.1.12 63114 1bs9 207 1.75e+01 1bs9 c.23.9.1 31330 1g66A 207 1.75e+01 1bs9 c.23.9.1 31329 1qmpA 130 1.90e+01 1dz3A c.23.1.1 31106 1cqzA 554 1.92e+01 1cr6B c.108.1.2 43339 c.69.1.11 34689 1rlaA 323 1.99e+01 1d3vA c.42.1.1 32561 1bc5A 269 2.00e+01 1af7 a.58.1.1 17929 c.66.1.8 34204 1dg3A 592 2.00e+01 1dg3A a.114.1.1 19078 c.37.1.8 32153 1c3pA 375 2.04e+01 1c3pA c.42.1.2 32606 1idm 343 2.05e+01 1cnzA c.77.1.1 35035 1lehA 364 2.07e+01 1bw9A c.2.1.7 30268 c.58.1.1 33916 1dz3A 130 2.11e+01 1dz3A c.23.1.1 31105 1jfvA 131 2.21e+01 c.44.1.1 66654 1jf8A 131 2.22e+01 c.44.1.1 66621 1jk7A 323 2.22e+01 1auiA d.159.1.3 63144 1oasA 322 2.28e+01 1oasA c.79.1.1 35293 3lck 271 2.33e+01 1fmk d.144.1.2 41686 1a8q 274 2.35e+01 1brt c.69.1.12 34702 1d0qA 103 2.43e+01 1d0qA g.41.3.2 45208 1dcfA 136 2.48e+01 1dcfA c.23.1.2 31124 1d3vA 323 2.49e+01 1d3vA c.42.1.1 32559 1g6sA 427 2.51e+01 1eps d.68.2.2 39584 1fps 348 2.52e+01 1uby a.128.1.1 19436 1ig3A 263 2.57e+01 1ig3A b.82.6.1 62358 c.100.1.1 62359 1b25A 619 2.61e+01 1b25A a.110.1.1 19044 d.152.1.1 41796 1qhtA 775 2.63e+01 1tgoA c.55.3.5 33722 e.8.1.1 43011 1qfjA 232 2.63e+01 1qfjA b.43.4.2 25655 c.25.1.1 31545 3tmkA 216 2.73e+01 3tmkA c.37.1.1 31920 4uagA 437 2.73e+01 4uagA c.5.1.1 30651 c.59.1.1 33952 c.72.2.1 34955 1ipd 345 2.74e+01 1cnzA c.77.1.1 35038 1uag 437 2.76e+01 4uagA c.5.1.1 30653 c.59.1.1 33954 c.72.2.1 34957 3uagA 437 2.76e+01 4uagA c.5.1.1 30652 c.59.1.1 33953 c.72.2.1 34956 1g97A 459 2.82e+01 1fwyA b.81.1.4 60394 c.68.1.5 60395 2fsp 124 2.84e+01 1dz3A c.23.1.1 31119 1gesA 450 2.87e+01 3grs c.3.1.5 30473 c.3.1.5 30474 d.87.1.1 40168 1b87A 181 2.98e+01 1b87A d.108.1.1 40797 1i7fA 292 3.03e+01 1i7fA d.193.1.1 61888 1g6oA 330 3.11e+01 1g6oA c.37.1.13 32430 1h61A 364 3.14e+01 1oyc c.1.4.1 60657 1cr6B 554 3.16e+01 1cr6B c.108.1.2 43338 c.69.1.11 34688 1hm9A 468 3.18e+01 b.81.1.4 65866 c.68.1.5 65867 1eypA 222 3.21e+01 1eypA d.36.1.1 38536 1fzaB 328 3.29e+01 3fib d.171.1.1 42480 h.1.8.1 45621 1kv9A 668 3.32e+01 1g291 372 3.32e+01 1g291 1srrA 124 3.40e+01 1dz3A c.23.1.1 31110 1fjmA 330 3.41e+01 1auiA d.159.1.3 42082 1cozA 129 3.45e+01 1cozA c.26.1.2 31598 1esc 306 3.47e+01 1esc c.23.10.1 31334 1tgoA 773 3.54e+01 1tgoA c.55.3.5 33721 e.8.1.1 43010 1dkgA 197 3.57e+01 1dkgA b.73.1.1 27812 h.1.9.1 45626 1fmk 452 3.57e+01 1fmk b.34.2.1 24511 d.93.1.1 40436 d.144.1.2 41690 1ir6A 424 3.58e+01 1jjuA 489 3.60e+01 a.3.1.7 66774 a.3.1.7 66775 b.1.1.6 66776 b.1.1.6 66777 b.61.4.1 66778 1i58A 189 3.61e+01 1b3qA d.122.1.3 61773 1aiu 105 3.64e+01 1erv c.47.1.1 32746 1ihvA 52 3.66e+01 1ihvA b.34.7.1 24629 1fu1A 203 3.69e+01 1fu1B b.59.1.1 27076 h.1.11.1 45630 1jepA 222 3.70e+01 d.36.1.1 66612 1eyqA 222 3.72e+01 1eypA d.36.1.1 38534 1yrgA 385 3.75e+01 1yrgA c.10.1.2 30854 1jj2E 177 3.78e+01 1ffk1 d.141.1.1 63089 d.141.1.1 63090 1dquA 538 3.86e+01 1dquA c.1.12.6 29314 1trb 320 3.90e+01 1trb c.3.1.5 30529 c.3.1.5 30530 1ek4A 418 3.90e+01 1dd8A c.95.1.1 59436 c.95.1.1 59437 2nadA 393 3.96e+01 2nadA c.2.1.4 30090 c.23.12.1 31350