PFRMAT SS
TARGET T0187
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-alpha-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	   11 (1 ABCDEFGHIST )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0187.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 30
METHOD
MODEL 1
G C 0.258
P E 0.279
A B 0.239
W B 0.395
P B 0.528
D E 0.469
S H 0.434
S H 0.310
T B 0.494
S H 0.658
E H 0.865
D H 0.883
A H 0.925
L H 0.955
K H 0.960
V H 0.952
L H 0.897
E H 0.844
K H 0.710
Y B 0.540
G S 0.376
I E 0.273
E S 0.271
T C 0.472
S B 0.653
E H 0.533
S H 0.688
V H 0.630
K H 0.677
R H 0.637
A H 0.482
I H 0.223
L H 0.206
Q B 0.230
E B 0.230
T B 0.246
P E 0.240
K H 0.286
H S 0.261
L E 0.244
S H 0.213
N A 0.259
V E 0.445
E E 0.506
I E 0.468
H E 0.759
L E 0.684
I A 0.380
G E 0.164
N B 0.429
V H 0.288
Q H 0.660
K H 0.796
V H 0.844
C H 0.912
D H 0.943
E H 0.962
A H 0.936
K H 0.939
S H 0.958
L H 0.947
A H 0.905
K H 0.755
E H 0.774
K B 0.680
G S 0.523
F B 0.440
N E 0.329
A E 0.512
E E 0.690
I E 0.545
I E 0.359
T E 0.251
T H 0.333
S B 0.210
L A 0.249
D H 0.273
C H 0.290
E H 0.625
A H 0.728
R H 0.869
E H 0.899
A H 0.806
G H 0.903
R H 0.946
F H 0.954
I H 0.917
A H 0.946
S H 0.977
I H 0.967
M H 0.940
K H 0.948
E H 0.944
V H 0.873
K H 0.751
F H 0.691
K B 0.599
D S 0.425
R B 0.469
P E 0.280
L E 0.242
K C 0.244
K B 0.329
P E 0.557
A E 0.723
A E 0.738
L E 0.571
I A 0.405
F D 0.324
G D 0.238
G S 0.215
E B 0.246
T E 0.353
V E 0.530
V E 0.686
H E 0.636
V E 0.397
K S 0.162
G B 0.165
N S 0.236
G D 0.316
I H 0.138
G S 0.236
G D 0.257
R H 0.209
N H 0.366
Q H 0.664
E H 0.821
L H 0.900
A H 0.918
L H 0.918
S H 0.950
A H 0.901
A H 0.865
I H 0.864
A H 0.693
L H 0.501
E H 0.464
G S 0.570
I E 0.302
E G 0.298
G S 0.589
V E 0.472
I E 0.410
L E 0.501
C E 0.444
S E 0.333
A B 0.183
G S 0.337
T B 0.262
END