PFRMAT SS
TARGET T0187
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-alpha-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	   11 (1 ABCDEFGHIST )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0187.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 30
METHOD
MODEL 1
M S 0.153
F B 0.232
D B 0.266
P H 0.357
E H 0.600
S H 0.602
L H 0.852
K H 0.935
K H 0.931
L H 0.907
A H 0.895
I H 0.934
E H 0.946
I H 0.943
V H 0.931
K H 0.942
K H 0.945
S H 0.904
I H 0.773
E H 0.690
A H 0.506
V B 0.342
F A 0.541
P H 0.567
D H 0.848
R H 0.861
A H 0.857
V H 0.665
K H 0.644
E H 0.592
T S 0.311
L E 0.300
P E 0.264
K B 0.279
L B 0.213
N H 0.273
L D 0.265
D S 0.227
R B 0.466
V E 0.682
I E 0.788
L E 0.609
V E 0.194
A E 0.282
V S 0.357
G D 0.245
K H 0.654
A H 0.779
A H 0.863
W H 0.924
R H 0.946
M H 0.943
A H 0.961
K H 0.958
A H 0.965
A H 0.930
Y H 0.862
E H 0.877
V H 0.528
L B 0.205
G H 0.265
K I 0.217
K H 0.359
I S 0.317
R E 0.218
K S 0.156
G E 0.303
V E 0.665
V E 0.720
V A 0.377
T B 0.428
K C 0.464
Y G 0.397
G S 0.445
H B 0.254
S S 0.218
E B 0.257
G C 0.229
P B 0.164
I B 0.285
D H 0.178
D E 0.294
F E 0.507
E E 0.618
I A 0.571
Y E 0.322
E E 0.332
A B 0.243
G G 0.158
H B 0.244
P E 0.166
V B 0.320
P B 0.379
D B 0.316
E H 0.693
N H 0.788
T H 0.895
I H 0.952
K H 0.959
T H 0.957
T H 0.951
R H 0.952
R H 0.967
V H 0.934
L H 0.827
E H 0.891
L H 0.649
V I 0.392
D H 0.473
Q S 0.880
L B 0.415
N C 0.588
E H 0.416
N S 0.601
D E 0.347
T E 0.629
V E 0.727
L E 0.786
F E 0.814
L E 0.538
L A 0.292
S D 0.297
G D 0.195
G S 0.332
G C 0.170
S E 0.274
S E 0.276
L E 0.360
F E 0.288
E B 0.322
L B 0.364
P B 0.440
L H 0.231
E G 0.445
G S 0.671
V B 0.536
S B 0.650
L H 0.730
E H 0.933
E H 0.895
I H 0.922
Q H 0.942
K H 0.941
L H 0.939
T H 0.891
S H 0.848
A H 0.879
L H 0.677
L H 0.461
K H 0.433
END