# List of top-scoring protein chains for t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1lk5A 229 2.08e-01 1fnsA 196 6.42e-01 1auq c.62.1.1 34136 1oakA 196 6.46e-01 1auq c.62.1.1 34138 1ijbA 202 6.75e-01 1jmyA 522 6.77e-01 c.69.1.1 63182 1f6wA 533 6.88e-01 2bce c.69.1.1 34629 1auq 208 7.07e-01 1auq c.62.1.1 34137 1f5mB 180 1.08e+00 1f5mB d.110.2.1 40896 1f5mA 180 1.08e+00 1f5mB d.110.2.1 40895 1hbnB 442 1.37e+00 1mroB a.89.1.1 60900 d.58.31.2 60901 1mroB 442 1.37e+00 1mroB a.89.1.1 18531 d.58.31.2 39449 1aqlA 532 2.10e+00 2bce c.69.1.1 34627 1akn 579 2.20e+00 2bce c.69.1.1 34626 1hzzB 384 2.33e+00 c.2.1.4 61472 c.23.12.2 61473 1sieB 383 2.78e+00 1vpsA b.10.1.4 23358 1xyn 178 3.05e+00 1axkA b.29.1.11 24322 1ioiA 208 3.64e+00 1a2zA c.56.4.1 62629 1iofA 208 4.09e+00 1a2zA c.56.4.1 62625 1k8aL 132 4.60e+00 1fi8A 228 5.11e+00 5ptp b.47.1.2 26374 1arb 268 5.26e+00 1arb b.47.1.1 25766 1hg3A 225 5.46e+00 1hg3A c.1.1.1 61025 1qh5A 260 5.79e+00 1qh5A d.157.1.2 42057 1qh3A 260 5.79e+00 1qh5A d.157.1.2 42059 1xze 214 6.10e+00 1cex c.23.9.1 31310 1a5cA 368 6.58e+00 1fbaA c.1.10.1 29148 1qmgA 524 7.28e+00 1qmgA a.100.1.2 18785 c.2.1.6 30182 1yveI 524 7.28e+00 1qmgA a.100.1.2 18789 c.2.1.6 30186 1yveJ 524 7.28e+00 1qmgA a.100.1.2 18790 c.2.1.6 30187 2fnbA 95 8.18e+00 2fnbA b.1.2.1 21979 1php 394 9.84e+00 16pk c.86.1.1 35452 1cuu 214 1.05e+01 1cex c.23.9.1 31309 1xzi 214 1.13e+01 1cex c.23.9.1 31297 1bvuA 418 1.17e+01 1hwyA c.2.1.7 30226 c.58.1.1 33874 1cuy 214 1.19e+01 1cex c.23.9.1 31302 1lkzA 219 1.26e+01 2ldx 331 1.31e+01 3ldh c.2.1.5 30159 d.162.1.1 42126 1xzj 214 1.32e+01 1cex c.23.9.1 31299 1cex 214 1.33e+01 1cex c.23.9.1 31285 1ffb 214 1.33e+01 1cex c.23.9.1 31305 2cut 198 1.33e+01 1cex c.23.9.1 31315 1cuf 214 1.33e+01 1cex c.23.9.1 31301 1xzd 214 1.33e+01 1cex c.23.9.1 31321 1xzl 214 1.34e+01 1cex c.23.9.1 31295 1cuh 214 1.34e+01 1cex c.23.9.1 31311 1xzg 214 1.36e+01 1cex c.23.9.1 31292 1agy 200 1.37e+01 1cex c.23.9.1 31286 1cus 200 1.38e+01 1cex c.23.9.1 31287 1xzh 214 1.39e+01 1cex c.23.9.1 31293 1xzf 214 1.40e+01 1cex c.23.9.1 31291 1lam 484 1.41e+01 1lam c.50.1.1 33166 c.56.5.3 33829 1ffe 214 1.41e+01 1cex c.23.9.1 31288 1lap 488 1.41e+01 1lam c.50.1.1 33171 c.56.5.3 33834 1g2oA 268 1.46e+01 1b8oA c.56.2.1 60228 1sesA 421 1.47e+01 1sesA a.2.7.1 15710 d.104.1.1 40710 1cua 214 1.52e+01 1cex c.23.9.1 31313 1cue 197 1.52e+01 1cex c.23.9.1 31322 1cub 214 1.55e+01 1cex c.23.9.1 31304 1cug 214 1.57e+01 1cex c.23.9.1 31308 1chkA 238 1.58e+01 1chkA d.2.1.7 36999 1b63A 333 1.72e+01 1b63A d.14.1.3 37566 d.122.1.2 41107 1bknA 352 1.74e+01 1b63A d.14.1.3 37568 d.122.1.2 41109 1cuj 214 1.80e+01 1cex c.23.9.1 31294 1xzb 214 1.82e+01 1cex c.23.9.1 31303 1dwqA 262 1.86e+01 1qj4A c.69.1.20 34808 1a27 289 1.90e+01 1fds c.2.1.2 29839 1b62A 349 1.97e+01 1b63A d.14.1.3 37567 d.122.1.2 41108 1cuv 214 1.98e+01 1cex c.23.9.1 31318 1eblA 317 2.04e+01 1hn9A c.95.1.1 35973 c.95.1.1 35974 1eblB 317 2.04e+01 1hn9A c.95.1.1 35975 c.95.1.1 35976 1fizA 263 2.06e+01 5ptp 1b7kA 66 2.08e+01 1msi b.85.1.1 28306 1hnjA 317 2.15e+01 1hn9A c.95.1.1 35969 c.95.1.1 35970 1hn9A 317 2.15e+01 1hn9A c.95.1.1 35977 c.95.1.1 35978 1bhs 327 2.17e+01 1fds c.2.1.2 29840 1fdw 327 2.17e+01 1fds c.2.1.2 29845 1hnhA 317 2.17e+01 1hn9A c.95.1.1 35983 c.95.1.1 35984 1fdt 327 2.17e+01 1fds c.2.1.2 29841 1fds 327 2.17e+01 1fds c.2.1.2 29838 1fduC 327 2.18e+01 1fds c.2.1.2 29850 1qjjA 200 2.19e+01 1iae d.92.1.8 40313 1f60A 458 2.20e+01 1efcA b.43.3.1 25705 b.44.1.1 25745 c.37.1.8 32140 1iab 200 2.24e+01 1iae d.92.1.8 40312 1ast 200 2.24e+01 1iae d.92.1.8 40310 1iae 200 2.24e+01 1iae d.92.1.8 40311 6chyB 128 2.25e+01 3chy c.23.1.1 31063 1vin 268 2.28e+01 1vin a.74.1.1 18354 a.74.1.1 18355 1jeoA 180 2.37e+01 c.80.1.3 66611 1vlzA 128 2.38e+01 3chy c.23.1.1 31048 1gy3B 258 2.41e+01 1qmzB 259 2.42e+01 1vin a.74.1.1 18338 a.74.1.1 18339 1diiA 521 2.43e+01 1qltA d.58.32.1 39481 d.145.1.1 41744 1finB 260 2.44e+01 1vin a.74.1.1 18342 a.74.1.1 18343 1e9hB 261 2.45e+01 a.74.1.1 64813 a.74.1.1 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28512 1fjgI 128 3.52e+01 1fjfI d.14.1.1 37559 1gmeA 151 3.56e+01 b.15.1.1 65305 1smrA 335 3.60e+01 1smrA b.50.1.2 26878 1k5hA 398 3.60e+01 a.69.3.1 68192 c.2.1.3 68193 d.81.1.3 68194 1f8gA 384 3.64e+01 1sayA c.2.1.4 59695 c.23.12.2 59696 1fftB 315 3.64e+01 1cyx b.6.1.2 23025 f.2.1.3 43628 1gtxA 472 3.70e+01 1gtxA c.67.1.4 34464 1qcrB 423 3.77e+01 1be3B d.185.1.1 59027 d.185.1.1 59028 1eo9A 209 3.81e+01 3pchA b.3.6.1 22731 1dxrH 258 3.82e+01 6prcH b.41.1.1 25456 f.2.1.2 43433 6prcH 258 3.82e+01 6prcH b.41.1.1 25457 f.2.1.2 43436 1prcH 259 3.83e+01 6prcH b.41.1.1 25460 f.2.1.2 43445 1tgl 269 3.84e+01 3tgl c.69.1.17 34734 4tgl 269 3.84e+01 3tgl c.69.1.17 34735 5tgl 269 3.84e+01 3tgl c.69.1.17 34736 1be3B 439 3.91e+01 1be3B d.185.1.1 58952 d.185.1.1 58953 1btmA 252 3.97e+01 1amk c.1.1.1 28513