# List of top-scoring protein chains for t2k-100-30-dssp_ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1bouB 302 1.81e-01 1bouB c.56.6.1 33859 1rlr 761 2.07e-01 1rlr a.98.1.1 18753 c.7.1.2 30679 1jeoA 180 3.12e-01 c.80.1.3 66611 1pdo 135 1.50e+00 1pdo c.54.1.1 33376 1bd3A 243 2.20e+00 1bd3A c.61.1.1 34098 1l9fA 389 2.78e+00 1h8eD 482 2.86e+00 1skyE a.69.1.1 60747 b.49.1.1 60748 c.37.1.11 60749 1f60A 458 3.16e+00 1efcA b.43.3.1 25705 b.44.1.1 25745 c.37.1.8 32140 1el5A 389 3.40e+00 1b3mA c.3.1.2 30369 d.16.1.3 37937 1i50K 120 3.52e+00 d.74.3.2 61765 1chuA 540 3.70e+00 1chuA a.7.3.1 16325 c.3.1.4 30424 d.168.1.1 42307 1xxaA 78 4.05e+00 1xxaA d.74.2.1 39700 1b16A 254 4.19e+00 1b16A c.2.1.2 29875 2pgi 445 4.26e+00 2pgi c.80.1.2 35308 1jjyA 636 4.28e+00 1jjyA e.26.1.2 63141 1c7qA 445 4.40e+00 2pgi c.80.1.2 35307 1a4uA 254 5.21e+00 1b16A c.2.1.2 29878 1fs5A 266 5.32e+00 c.35.1.1 65044 1deaA 266 5.40e+00 1deaA c.35.1.1 31760 1fohA 664 5.41e+00 1fohA c.3.1.2 30381 c.47.1.10 33078 d.16.1.2 37900 1xxbA 78 5.58e+00 1xxaA d.74.2.1 39706 1gpjA 404 6.19e+00 a.151.1.1 65451 c.2.1.10 65452 d.58.39.1 65453 1lqtA 456 6.22e+00 1httA 423 6.48e+00 1adjA c.51.1.1 33178 d.104.1.1 40727 1c8bA 371 6.57e+00 1c8bA c.56.1.2 59082 1lgyA 269 6.57e+00 3tgl c.69.1.17 34758 1f9aA 168 6.70e+00 1f9aA c.26.1.3 31602 1fsfA 266 6.74e+00 c.35.1.1 65047 1jilA 420 7.59e+00 c.26.1.1 66745 1qe5A 266 7.86e+00 1b8oA c.56.2.1 33784 1fg7A 356 7.87e+00 1gewA c.67.1.1 59819 1jqeA 292 8.35e+00 1kl7A 514 8.53e+00 1que 303 8.58e+00 1fnc b.43.4.2 25647 c.25.1.1 31537 1thg 544 8.69e+00 1thg c.69.1.17 34763 1kmmA 424 8.71e+00 1adjA c.51.1.1 33174 d.104.1.1 40723 1qg0A 308 8.77e+00 1fnc b.43.4.2 25639 c.25.1.1 31529 1kq3A 376 8.92e+00 e.22.1.2 68790 1dgkN 917 8.95e+00 1qhaA c.55.1.3 33487 c.55.1.3 33488 c.55.1.3 33489 c.55.1.3 33490 1hkcA 917 8.99e+00 1qhaA c.55.1.3 33475 c.55.1.3 33476 c.55.1.3 33477 c.55.1.3 33478 1qhaA 917 9.14e+00 1qhaA c.55.1.3 33467 c.55.1.3 33468 c.55.1.3 33469 c.55.1.3 33470 1czaN 917 9.21e+00 1qhaA c.55.1.3 33463 c.55.1.3 33464 c.55.1.3 33465 c.55.1.3 33466 1e79D 482 9.24e+00 1skyE a.69.1.1 18272 b.49.1.1 26437 c.37.1.11 32317 1vpt 348 9.29e+00 3mag c.66.1.9 34207 1cbf 285 9.61e+00 1cbf c.90.1.1 35587 1fnc 314 9.74e+00 1fnc b.43.4.2 25627 c.25.1.1 31517 1fnd 314 9.94e+00 1fnc b.43.4.2 25626 c.25.1.1 31516 1hkbA 917 1.06e+01 1qhaA c.55.1.3 33479 c.55.1.3 33480 c.55.1.3 33481 c.55.1.3 33482 1lk5A 229 1.06e+01 1dcfA 136 1.09e+01 1dcfA c.23.1.2 31124 1mroB 442 1.13e+01 1mroB a.89.1.1 18531 d.58.31.2 39449 1dn1A 594 1.14e+01 1dn1A e.25.1.1 43357 1hdr 244 1.20e+01 1dhr c.2.1.2 29837 1jgtA 513 1.21e+01 c.26.2.1 66684 d.153.1.1 66685 1ecfA 504 1.22e+01 1ecfB c.61.1.1 34053 d.153.1.1 41820 1gewA 356 1.23e+01 1gewA c.67.1.1 60470 1kzhA 555 1.29e+01 1ekjB 221 1.34e+01 1ekjB c.53.2.1 33365 9ldtA 332 1.34e+01 3ldh c.2.1.5 30154 d.162.1.1 42121 1fj2A 232 1.36e+01 1auoA c.69.1.14 34720 1ecfB 504 1.43e+01 1ecfB c.61.1.1 34054 d.153.1.1 41821 1be3B 439 1.44e+01 1be3B d.185.1.1 58952 d.185.1.1 58953 1jq5A 370 1.46e+01 e.22.1.2 67084 3ladA 476 1.47e+01 1lvl c.3.1.5 30573 c.3.1.5 30574 d.87.1.1 40208 3mag 307 1.50e+01 3mag c.66.1.9 34205 1g3kA 174 1.51e+01 1nedA d.153.1.4 41989 1ekjA 221 1.52e+01 1ekjB c.53.2.1 33364 1ceqA 316 1.52e+01 1ceqA c.2.1.5 30163 d.162.1.1 42130 1l3lA 234 1.58e+01 1fdr 248 1.61e+01 1fdr b.43.4.2 25653 c.25.1.1 31543 1dhr 241 1.62e+01 1dhr c.2.1.2 29832 1fsz 372 1.68e+01 1fsz c.32.1.1 31750 d.79.2.1 39802 1hbnB 442 1.70e+01 1mroB a.89.1.1 60900 d.58.31.2 60901 1bgvA 449 1.74e+01 1k89 c.2.1.7 30217 c.58.1.1 33865 1j5rA 371 1.78e+01 1fvgA 199 1.83e+01 1fvaA d.58.28.1 39408 1j4wA 174 1.83e+01 1k89 449 1.85e+01 1k89 c.2.1.7 30218 c.58.1.1 33866 1dixA 208 1.92e+01 1bk7A d.124.1.1 41122 1l7mA 211 1.92e+01 1fjgI 128 1.93e+01 1fjfI d.14.1.1 37559 1fvaA 217 1.94e+01 1fvaA d.58.28.1 39409 1gt8C 1025 2.01e+01 1d9tA 289 2.03e+01 1deaA c.35.1.1 31767 1hrdA 449 2.04e+01 1k89 c.2.1.7 30219 c.58.1.1 33867 1kaeA 434 2.09e+01 1f5sA 211 2.10e+01 1f5sA c.108.1.4 59656 1j97A 211 2.10e+01 1f5sA c.108.1.4 62753 1eudA 311 2.11e+01 2scuA c.2.1.8 30312 c.23.4.1 31140 1fnnA 389 2.15e+01 1fnnA a.4.5.11 16129 c.37.1.13 32426 1c7nA 399 2.18e+01 1d2fA c.67.1.3 34413 1k75A 434 2.25e+01 c.82.1.2 68253 3grs 478 2.25e+01 3grs c.3.1.5 30441 c.3.1.5 30442 d.87.1.1 40152 4gr1 478 2.26e+01 3grs c.3.1.5 30461 c.3.1.5 30462 d.87.1.1 40162 1v39 322 2.27e+01 3mag c.66.1.9 34206 1vp9 322 2.27e+01 3mag c.66.1.9 34210 1dhpA 292 2.33e+01 1dhpA c.1.10.1 29097 1l9mA 692 2.40e+01 1fd9A 213 2.41e+01 1fd9A d.26.1.1 59771 1bksB 397 2.48e+01 2tysB c.79.1.1 35285 1xxcA 78 2.49e+01 1xxaA d.74.2.1 39712 1ypcI 64 2.49e+01 2sniI d.40.1.1 38570 1trb 320 2.58e+01 1trb c.3.1.5 30529 c.3.1.5 30530 1gt8A 1025 2.63e+01 1ehiA 377 2.65e+01 1iow c.30.1.2 31716 d.142.1.1 41484 1e5dA 402 2.65e+01 1e5dA c.23.5.1 31208 d.157.1.3 42061 1yveI 524 2.67e+01 1qmgA a.100.1.2 18789 c.2.1.6 30186 1qmgA 524 2.67e+01 1qmgA a.100.1.2 18785 c.2.1.6 30182 1gklA 297 2.68e+01 c.69.1.2 65250 1yveJ 524 2.69e+01 1qmgA a.100.1.2 18790 c.2.1.6 30187 1kyqA 274 2.70e+01 1khbA 625 2.75e+01 c.91.1.1 68606 c.109.1.1 68607 1ebbA 202 2.78e+01 c.60.1.1 64900 1a6f 119 2.82e+01 1a6f d.14.1.2 37564 1taq 832 2.84e+01 1taq a.60.7.1 18082 c.53.1.2 33352 c.55.3.5 33698 e.8.1.1 42991 1qopB 396 2.87e+01 2tysB c.79.1.1 35270 1f8gA 384 2.93e+01 1sayA c.2.1.4 59695 c.23.12.2 59696 1imjA 210 2.96e+01 1g2oA 268 2.96e+01 1b8oA c.56.2.1 60228 1f4kA 122 3.00e+01 1bm9A a.4.5.7 59646 2ts1 419 3.00e+01 2ts1 c.26.1.1 31564 1ndh 272 3.01e+01 1ndh b.43.4.2 25662 c.25.1.1 31552 1ek6A 348 3.06e+01 1xel c.2.1.2 29800 1i7pA 274 3.06e+01 b.43.4.2 66048 c.25.1.1 66049 2tysB 397 3.12e+01 2tysB c.79.1.1 35272 1gkkA 297 3.14e+01 c.69.1.2 65248 1wab 232 3.15e+01 1wab c.23.10.3 31341 1gt8B 1025 3.19e+01 1es9A 232 3.19e+01 1wab c.23.10.3 31340 2wsyB 396 3.22e+01 2tysB c.79.1.1 35288 1smrA 335 3.24e+01 1smrA b.50.1.2 26878 1bm9A 122 3.25e+01 1bm9A a.4.5.7 16116 1aj6 219 3.28e+01 1aj6 d.122.1.2 41106 1hqkA 154 3.36e+01 c.16.1.1 65902 1jqaA 370 3.43e+01 e.22.1.2 67085 1poiB 260 3.45e+01 1poiB c.63.1.1 34155 1rypB 250 3.60e+01 1rypB d.153.1.4 41933 1lfpA 249 3.62e+01 1go4A 205 3.71e+01 1hyuA 521 3.71e+01 1hyuA c.3.1.5 30547 c.3.1.5 30548 c.47.1.2 32779 c.47.1.2 32780 1poxA 585 3.73e+01 1poxA c.31.1.3 31731 c.36.1.1 31793 c.36.1.1 31794 1h7wA 1025 3.75e+01 1h7wA a.1.2.2 15683 c.1.4.1 28628 c.3.1.1 30324 c.4.1.1 30609 d.58.1.5 39007 1c1dA 355 3.79e+01 1bw9A c.2.1.7 30270 c.58.1.1 33918 1ep2B 261 3.92e+01 1ep2B b.43.4.2 25666 c.25.1.3 31556 1oaa 259 3.95e+01 1oaa c.2.1.2 29829 1opc 110 4.00e+01 1opc a.4.6.1 16231