SAM_T02 Results for T0187

When SAM_T02 finishes, you will see links to the following files below:
Description Link to file Date
Inputs
Submitted sequence(s) T0187.a2m
 08/14/02
SAM_T02 multiple alignment in a2m format T0187.t2k.a2m.gz
 08/14/02
SAM_T02 multiple alignment in pretty html format T0187.t2k.pa.html
 08/14/02
SAM_T02 target hidden Markov model T0187.t2k-w0.5.mod
 08/14/02
Secondary Structure Prediction
DSSP EBGHSTL structure prediction CASP format T0187.t2k.dssp-ebghstl
 08/14/02
DSSP EBGHSTL structure prediction RDB format T0187.t2k.dssp-ebghstl.rdb
 08/14/02
DSSP EBGHSTL structure prediction sequence format T0187.t2k.dssp-ebghstl.seq
 08/14/02
Stride EBGHTL structure prediction CASP format T0187.t2k.stride-ebghtl
 08/14/02
Stride EBGHTL structure prediction RDB format T0187.t2k.stride-ebghtl.rdb
 08/14/02
Stride EBGHTL structure prediction sequence format T0187.t2k.stride-ebghtl.seq
 08/14/02
Str structure prediction CASP format T0187.t2k.str
 08/14/02
Str structure prediction RDB format T0187.t2k.str.rdb
 08/14/02
Str structure prediction sequence format T0187.t2k.str.seq
 08/14/02
Alpha angle prediction RDB format T0187.t2k.alpha.rdb
 08/14/02
Alpha angle prediction sequence format T0187.t2k.alpha.seq
 08/14/02
DSSP 3-value prediction RDB format T0187.t2k.dssp_ehl2.rdb
 08/14/02
Sequence Logos
SAM_T02 multiple alignment in sequence logo format T0187.t2k.w0.5-logo.eps
 08/14/02
DSSP EBGHSTL structure prediction in sequence logo format T0187.t2k.dssp-ebghstl-logo.eps
 08/14/02
Stride EBGHTL structure prediction in sequence logo format T0187.t2k.stride-ebghtl-logo.eps
 08/14/02
Str structure prediction in sequence logo format T0187.t2k.str-logo.eps
 08/14/02
Alpha angle prediction in sequence logo format T0187.t2k.alpha-logo.eps
 08/14/02
DSSP 3-value prediction in sequence logo format T0187.t2k.dssp_ehl2-logo.eps
 08/14/02
Target model scores
Annotated amino acid/100-30-dssp-ebghstl two-track target model scores T0187.t2k-100-30-dssp-ebghstl-scores.html
 08/14/02
Annotated amino acid/100-30-stride-ebghtl two-track target model scores T0187.t2k-100-30-stride-ebghtl-scores.html
 08/14/02
Annotated amino acid/100-30-str two-track target model scores T0187.t2k-100-30-str-scores.html
 08/14/02
Annotated amino acid/100-30-alpha two-track target model scores T0187.t2k-100-30-alpha-scores.html
 08/14/02
Annotated amino acid/100-30-dssp_ehl2 two-track target model scores T0187.t2k-100-30-dssp_ehl2-scores.html
 08/14/02
Annotated amino acid single-track target model scores of PDB T0187.t2k-w0.5-scores.html
 08/14/02
Template model scores
Annotated template model scores T0187.template-lib-scores.html
 08/14/02
Top Hits
Best scoring hits from all models T0187.t2k.best-scores.html
 08/14/02
Alignments for Top Hits
T02 Many Alignments Summary T0187.t2k.many_alignments.html
 08/14/02
T02 Top Models Summary T0187.t2k.top_reported_alignments.html
 08/14/02
Undertaker (3d) files
Script for dssp coloring in rasmol T0187.t2k.dssp-color.rasmol
 08/14/02
Script for stride coloring in rasmol T0187.t2k.stride-color.rasmol
 08/14/02
Script for str coloring in rasmol T0187.t2k.str-color.rasmol
 08/14/02
Script for alpha coloring in rasmol T0187.t2k.alpha-color.rasmol
 08/14/02
Multiple alignment for undertaker templates T0187.t2k-2track-undertaker.a2m
 08/14/02
many alignments for undertaker templates T0187.t2k.undertaker-align.script
 08/14/02
PDB file with models for many alignments T0187.t2k.undertaker-align.pdb.gz
 08/14/02
Fragment list for undertaker (from fragfinder) T0187.t2k.frag
 08/14/02

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001

SAM_T02 web system designed by Rachel Karchin and Kevin Karplus

rachelk@soe.ucsc.edu
karplus@soe.ucsc.edu