PFRMAT SS TARGET T0187 METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-ebghtl-seeded.net METHOD This is a 4-layer network, with METHOD window units METHOD 5 15 METHOD 7 15 METHOD 9 15 METHOD 13 6 (1 EBGHTL ) METHOD The input amino acid frequencies were determined from METHOD alignment T0187.t2k-thin90.a2m.gz METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1) METHOD Counts were regularized to probabilities using METHOD /projects/compbio/lib/recode3.20comp METHOD Total sequence weight for alignment was 30 METHOD MODEL 1 M C 0.816 F C 0.668 D C 0.619 P H 0.410 E H 0.600 S H 0.587 L H 0.774 K H 0.756 K H 0.843 L H 0.923 A H 0.939 I H 0.981 E H 0.971 I H 0.992 V H 0.990 K H 0.989 K H 0.986 S H 0.986 I H 0.954 E H 0.888 A H 0.858 V H 0.527 F C 0.679 P H 0.841 D H 0.884 R H 0.872 A H 0.863 V H 0.877 K H 0.712 E H 0.710 T H 0.614 L C 0.446 P C 0.466 K C 0.438 L T 0.728 N T 0.806 L T 0.827 D T 0.693 R C 0.493 V E 0.913 I E 0.984 L E 0.992 V E 0.976 A E 0.775 V C 0.483 G C 0.475 K H 0.894 A H 0.944 A H 0.995 W H 0.999 R H 1.000 M H 1.000 A H 1.000 K H 1.000 A H 1.000 A H 0.999 Y H 0.996 E H 0.983 V H 0.943 L H 0.857 G H 0.591 K T 0.378 K T 0.426 I T 0.431 R T 0.590 K T 0.563 G E 0.654 V E 0.944 V E 0.973 V E 0.968 T E 0.857 K E 0.451 Y T 0.535 G T 0.599 H T 0.520 S C 0.493 E C 0.453 G C 0.552 P C 0.526 I C 0.508 D C 0.593 D E 0.535 F E 0.800 E E 0.926 I E 0.982 Y E 0.976 E E 0.936 A E 0.578 G C 0.578 H C 0.515 P C 0.451 V C 0.563 P C 0.520 D C 0.467 E H 0.584 N H 0.642 T H 0.917 I H 0.990 K H 0.996 T H 0.995 T H 0.997 R H 0.998 R H 0.998 V H 0.998 L H 0.997 E H 0.989 L H 0.984 V H 0.959 D H 0.878 Q T 0.327 L C 0.695 N T 0.519 E T 0.620 N T 0.684 D T 0.465 T E 0.818 V E 0.964 L E 0.990 F E 0.996 L E 0.991 L E 0.967 S E 0.711 G C 0.535 G C 0.480 G G 0.621 S G 0.727 S G 0.710 L T 0.382 F T 0.394 E C 0.360 L C 0.483 P T 0.555 L T 0.806 E T 0.882 G T 0.772 V C 0.356 S C 0.804 L H 0.927 E H 0.966 E H 0.973 I H 0.992 Q H 0.994 K H 0.994 L H 0.997 T H 0.997 S H 0.998 A H 0.997 L H 0.994 L H 0.989 K H 0.975 S H 0.918 G C 0.874 A C 0.888 S C 0.885 I H 0.626 E H 0.775 E H 0.940 I H 0.993 N H 0.998 T H 0.999 V H 0.998 R H 0.993 K H 0.980 H H 0.970 L H 0.884 S H 0.709 Q H 0.574 V C 0.443 K C 0.657 G H 0.439 G H 0.746 R H 0.808 F H 0.865 A H 0.905 E H 0.874 R H 0.805 V H 0.692 F H 0.399 P T 0.472 A C 0.435 K E 0.534 V E 0.900 V E 0.947 A E 0.991 L E 0.990 V E 0.983 L E 0.948 S E 0.854 D E 0.557 V T 0.568 L T 0.746 G T 0.832 D T 0.531 R C 0.489 L G 0.509 D G 0.589 V G 0.459 I E 0.573 A E 0.727 S E 0.601 G C 0.335 P T 0.436 A T 0.438 W T 0.490 P T 0.479 D T 0.809 S T 0.829 S T 0.703 T T 0.588 S H 0.614 E H 0.769 D H 0.866 A H 0.988 L H 0.991 K H 0.993 V H 0.994 L H 0.990 E H 0.982 K H 0.968 Y H 0.919 G C 0.833 I C 0.801 E C 0.735 T C 0.775 S C 0.655 E H 0.461 S H 0.516 V H 0.487 K H 0.565 R H 0.601 A H 0.561 I H 0.578 L C 0.365 Q C 0.700 E C 0.749 T C 0.624 P T 0.487 K T 0.538 H T 0.457 L T 0.485 S T 0.567 N T 0.501 V E 0.494 E E 0.669 I E 0.862 H E 0.934 L E 0.954 I E 0.918 G E 0.667 N C 0.586 V H 0.482 Q H 0.910 K H 0.969 V H 0.984 C H 0.997 D H 0.998 E H 0.998 A H 0.998 K H 0.998 S H 0.994 L H 0.992 A H 0.984 K H 0.961 E H 0.945 K H 0.881 G C 0.905 F C 0.839 N C 0.674 A E 0.824 E E 0.954 I E 0.954 I E 0.803 T E 0.313 T T 0.361 S T 0.351 L H 0.547 D H 0.689 C H 0.756 E H 0.892 A H 0.960 R H 0.975 E H 0.973 A H 0.983 G H 0.973 R H 0.983 F H 0.982 I H 0.989 A H 0.987 S H 0.990 I H 0.991 M H 0.987 K H 0.989 E H 0.991 V H 0.990 K H 0.960 F H 0.950 K H 0.818 D C 0.863 R C 0.700 P C 0.553 L C 0.500 K C 0.705 K C 0.702 P C 0.495 A E 0.941 A E 0.991 L E 0.994 I E 0.984 F E 0.919 G T 0.492 G T 0.752 E T 0.482 T E 0.738 V E 0.864 V E 0.966 H E 0.958 V E 0.877 K E 0.625 G C 0.455 N C 0.534 G C 0.565 I C 0.482 G C 0.526 G C 0.387 R H 0.750 N H 0.927 Q H 0.998 E H 0.998 L H 0.998 A H 0.998 L H 0.997 S H 0.992 A H 0.993 A H 0.985 I H 0.971 A H 0.950 L H 0.922 E H 0.861 G C 0.367 I T 0.825 E T 0.846 G T 0.827 V E 0.639 I E 0.900 L E 0.983 C E 0.962 S E 0.928 A E 0.742 G E 0.423 T T 0.546 D T 0.540 G T 0.543 T C 0.457 D T 0.379 G T 0.465 P T 0.491 T T 0.463 D T 0.376 A G 0.390 A T 0.366 G C 0.330 G E 0.511 I E 0.664 V E 0.517 D C 0.489 G H 0.469 S H 0.699 T H 0.874 A H 0.969 K H 0.982 T H 0.983 L H 0.981 K H 0.967 A H 0.947 M H 0.802 G C 0.828 E C 0.784 D C 0.778 P H 0.853 Y H 0.837 Q H 0.847 Y H 0.916 L H 0.913 K H 0.899 N H 0.756 N C 0.534 D C 0.765 S H 0.915 Y H 0.973 N H 0.973 A H 0.967 L H 0.956 K H 0.934 K H 0.811 S H 0.511 G C 0.589 A C 0.416 L E 0.787 L E 0.873 I E 0.855 T E 0.620 G T 0.457 P T 0.612 T T 0.550 G T 0.657 T T 0.544 N T 0.429 V T 0.452 N C 0.387 D E 0.755 L E 0.924 I E 0.957 I E 0.983 G E 0.973 L E 0.963 I E 0.859 V C 0.971 END