PFRMAT SS
TARGET T0187
AUTHOR 4069-6308-1312 
METHOD This file is the result of combining several RDB files, specifically
METHOD T0187.t2k.dssp-ebghstl.rdb  (weight 1.53986)
METHOD T0187.t2k.stride-ebghtl.rdb  (weight 1.24869)
METHOD T0187.t2k.str.rdb  (weight 1.53983)
METHOD T0187.t2k.alpha.rdb  (weight 0.659012)
METHOD These files were combined by translating their predictions into EHL
METHOD predictions with tables generated by compare-real, and then combining
METHOD those predictions with weights proportional to their mutual information
METHOD with the EHL alphabet.  The comments from the individual files follow.
METHOD
METHOD Comments from T0187.t2k.dssp-ebghstl.rdb
METHOD ============================================
METHOD TARGET T0187
METHOD Using neural net t2k-5740-IDaaHr-5-15-7-15-9-15-13-ebghstl-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	    7 (1 EBGHSTL )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0187.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 30
METHOD
METHOD ============================================
METHOD Comments from T0187.t2k.stride-ebghtl.rdb
METHOD ============================================
METHOD TARGET T0187
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-ebghtl-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	    6 (1 EBGHTL )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0187.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 30
METHOD
METHOD ============================================
METHOD Comments from T0187.t2k.str.rdb
METHOD ============================================
METHOD TARGET T0187
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-str-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	   13 (1 str )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0187.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 30
METHOD
METHOD ============================================
METHOD Comments from T0187.t2k.alpha.rdb
METHOD ============================================
METHOD TARGET T0187
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-alpha-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	   11 (1 ABCDEFGHIST )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0187.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 30
METHOD
METHOD ============================================
MODEL 1
M C 0.91
F C 0.82
D C 0.81
P C 0.58
E H 0.60
S H 0.63
L H 0.80
K H 0.87
K H 0.91
L H 0.93
A H 0.94
I H 0.95
E H 0.95
I H 0.96
V H 0.96
K H 0.96
K H 0.95
S H 0.94
I H 0.91
E H 0.85
A H 0.68
V C 0.59
F C 0.85
P H 0.71
D H 0.86
R H 0.91
A H 0.90
V H 0.87
K H 0.80
E H 0.60
T C 0.52
L C 0.80
P C 0.80
K C 0.71
L C 0.78
N C 0.77
L C 0.85
D C 0.86
R C 0.72
V E 0.73
I E 0.91
L E 0.93
V E 0.89
A E 0.81
V C 0.49
G C 0.67
K H 0.69
A H 0.80
A H 0.89
W H 0.94
R H 0.94
M H 0.95
A H 0.95
K H 0.96
A H 0.95
A H 0.96
Y H 0.95
E H 0.93
V H 0.85
L H 0.65
G C 0.57
K C 0.67
K C 0.61
I C 0.61
R C 0.69
K C 0.75
G E 0.52
V E 0.87
V E 0.90
V E 0.89
T E 0.73
K C 0.59
Y C 0.83
G C 0.87
H C 0.81
S C 0.78
E C 0.78
G C 0.80
P C 0.76
I C 0.79
D C 0.80
D C 0.62
F E 0.64
E E 0.85
I E 0.91
Y E 0.87
E E 0.81
A E 0.49
G C 0.77
H C 0.88
P C 0.83
V C 0.83
P C 0.87
D C 0.83
E H 0.76
N H 0.82
T H 0.93
I H 0.96
K H 0.96
T H 0.96
T H 0.96
R H 0.96
R H 0.96
V H 0.96
L H 0.95
E H 0.95
L H 0.91
V H 0.86
D H 0.64
Q C 0.72
L C 0.89
N C 0.93
E C 0.70
N C 0.80
D C 0.70
T E 0.78
V E 0.92
L E 0.93
F E 0.93
L E 0.88
L E 0.71
S C 0.58
G C 0.79
G C 0.73
G C 0.51
S H 0.49
S H 0.47
L C 0.49
F C 0.62
E C 0.61
L C 0.72
P C 0.77
L C 0.72
E C 0.82
G C 0.88
V C 0.81
S C 0.88
L H 0.91
E H 0.94
E H 0.95
I H 0.95
Q H 0.95
K H 0.95
L H 0.95
T H 0.96
S H 0.96
A H 0.96
L H 0.95
L H 0.94
K H 0.90
S C 0.50
G C 0.91
A C 0.91
S C 0.77
I H 0.86
E H 0.91
E H 0.93
I H 0.93
N H 0.95
T H 0.95
V H 0.95
R H 0.94
K H 0.93
H H 0.89
L H 0.79
S H 0.68
Q H 0.54
V C 0.62
K C 0.73
G C 0.54
G H 0.74
R H 0.89
F H 0.92
A H 0.92
E H 0.89
R H 0.80
V H 0.64
F C 0.62
P C 0.78
A C 0.81
K C 0.68
V E 0.85
V E 0.89
A E 0.92
L E 0.93
V E 0.92
L E 0.84
S E 0.68
D C 0.60
V C 0.76
L C 0.85
G C 0.89
D C 0.85
R C 0.81
L H 0.69
D H 0.75
V H 0.69
I H 0.46
A C 0.38
S C 0.51
G C 0.77
P C 0.77
A C 0.72
W C 0.81
P C 0.86
D C 0.87
S C 0.75
S C 0.73
T C 0.71
S H 0.81
E H 0.84
D H 0.88
A H 0.95
L H 0.96
K H 0.96
V H 0.96
L H 0.96
E H 0.94
K H 0.87
Y H 0.56
G C 0.86
I C 0.86
E C 0.83
T C 0.88
S C 0.88
E H 0.76
S H 0.81
V H 0.85
K H 0.84
R H 0.79
A H 0.72
I H 0.58
L C 0.56
Q C 0.77
E C 0.83
T C 0.85
P C 0.79
K C 0.64
H C 0.63
L C 0.62
S C 0.67
N C 0.70
V C 0.50
E E 0.63
I E 0.86
H E 0.91
L E 0.92
I E 0.88
G E 0.62
N C 0.77
V C 0.49
Q H 0.83
K H 0.91
V H 0.93
C H 0.95
D H 0.95
E H 0.96
A H 0.96
K H 0.96
S H 0.96
L H 0.96
A H 0.95
K H 0.94
E H 0.88
K C 0.55
G C 0.94
F C 0.91
N C 0.70
A E 0.84
E E 0.91
I E 0.92
I E 0.84
T E 0.46
T C 0.61
S C 0.53
L C 0.46
D H 0.52
C H 0.58
E H 0.74
A H 0.91
R H 0.91
E H 0.92
A H 0.93
G H 0.95
R H 0.95
F H 0.95
I H 0.96
A H 0.96
S H 0.96
I H 0.96
M H 0.96
K H 0.96
E H 0.95
V H 0.95
K H 0.92
F H 0.83
K C 0.57
D C 0.92
R C 0.90
P C 0.83
L C 0.82
K C 0.89
K C 0.89
P C 0.66
A E 0.87
A E 0.92
L E 0.93
I E 0.87
F E 0.62
G C 0.78
G C 0.85
E C 0.64
T E 0.57
V E 0.75
V E 0.88
H E 0.89
V E 0.80
K E 0.56
G C 0.69
N C 0.83
G C 0.84
I C 0.85
G C 0.87
G C 0.79
R C 0.48
N H 0.73
Q H 0.92
E H 0.94
L H 0.95
A H 0.96
L H 0.96
S H 0.95
A H 0.95
A H 0.95
I H 0.94
A H 0.90
L H 0.84
E H 0.56
G C 0.77
I C 0.86
E C 0.85
G C 0.88
V E 0.53
I E 0.83
L E 0.91
C E 0.90
S E 0.85
A E 0.64
G C 0.63
T C 0.75
D C 0.79
G C 0.83
T C 0.79
D C 0.80
G C 0.85
P C 0.75
T C 0.68
D C 0.57
A C 0.52
A C 0.64
G C 0.66
G E 0.55
I E 0.72
V E 0.54
D C 0.78
G H 0.54
S H 0.66
T H 0.82
A H 0.94
K H 0.94
T H 0.95
L H 0.94
K H 0.93
A H 0.82
M C 0.61
G C 0.90
E C 0.89
D C 0.86
P H 0.89
Y H 0.93
Q H 0.93
Y H 0.93
L H 0.87
K H 0.72
N H 0.56
N C 0.65
D C 0.70
S H 0.73
Y H 0.92
N H 0.94
A H 0.94
L H 0.94
K H 0.92
K H 0.82
S H 0.60
G C 0.58
A C 0.60
L C 0.36
L E 0.57
I E 0.57
T C 0.49
G C 0.83
P C 0.84
T C 0.83
G C 0.83
T C 0.76
N C 0.62
V C 0.57
N C 0.60
D E 0.63
L E 0.79
I E 0.85
I E 0.89
G E 0.90
L E 0.87
I E 0.72
V C 0.89
END