PFRMAT SS
TARGET T0187
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-alpha-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	   11 (1 ABCDEFGHIST )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0187.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 30
METHOD
MODEL 1
M H 0.166
F B 0.221
D B 0.264
P H 0.357
E H 0.586
S H 0.570
L H 0.811
K H 0.920
K H 0.930
L H 0.901
A H 0.897
I H 0.940
E H 0.951
I H 0.945
V H 0.936
K H 0.943
K H 0.947
S H 0.897
I H 0.778
E H 0.691
A H 0.516
V B 0.311
F A 0.527
P H 0.586
D H 0.838
R H 0.857
A H 0.844
V H 0.643
K H 0.622
E H 0.530
T S 0.274
L E 0.264
P B 0.214
K B 0.233
L B 0.234
N H 0.256
L D 0.217
D S 0.163
R B 0.393
V E 0.651
I E 0.787
L E 0.601
V E 0.213
A E 0.295
V S 0.357
G D 0.244
K H 0.665
A H 0.784
A H 0.868
W H 0.927
R H 0.948
M H 0.947
A H 0.962
K H 0.957
A H 0.965
A H 0.928
Y H 0.853
E H 0.862
V H 0.494
L B 0.262
G H 0.218
K I 0.215
K H 0.364
I S 0.332
R E 0.223
K S 0.147
G E 0.272
V E 0.660
V E 0.721
V E 0.381
T B 0.428
K C 0.476
Y G 0.408
G S 0.475
H B 0.267
S S 0.224
E B 0.292
G B 0.245
P S 0.157
I B 0.299
D H 0.226
D E 0.249
F E 0.501
E E 0.628
I A 0.595
Y E 0.368
E E 0.367
A E 0.257
G G 0.163
H B 0.231
P S 0.172
V B 0.317
P B 0.372
D B 0.301
E H 0.699
N H 0.802
T H 0.901
I H 0.955
K H 0.961
T H 0.959
T H 0.955
R H 0.955
R H 0.968
V H 0.934
L H 0.832
E H 0.891
L H 0.643
V I 0.375
D H 0.442
Q S 0.902
L B 0.406
N C 0.591
E I 0.420
N S 0.562
D E 0.313
T E 0.618
V E 0.721
L E 0.781
F E 0.814
L E 0.544
L A 0.298
S D 0.303
G D 0.196
G S 0.333
G C 0.168
S E 0.273
S E 0.276
L E 0.356
F B 0.280
E B 0.318
L B 0.378
P B 0.444
L B 0.261
E G 0.468
G S 0.710
V B 0.526
S B 0.645
L H 0.755
E H 0.939
E H 0.900
I H 0.916
Q H 0.935
K H 0.957
L H 0.947
T H 0.910
S H 0.918
A H 0.944
L H 0.905
L H 0.782
K H 0.654
S B 0.515
G S 0.580
A B 0.588
S B 0.764
I H 0.628
E H 0.927
E H 0.929
I H 0.934
N H 0.904
T H 0.930
V H 0.931
R H 0.892
K H 0.882
H H 0.865
L H 0.752
S H 0.792
Q H 0.666
V H 0.451
K H 0.512
G H 0.556
G H 0.702
R H 0.866
F H 0.904
A H 0.862
E H 0.821
R H 0.699
V S 0.380
F B 0.346
P S 0.371
A B 0.418
K E 0.481
V A 0.515
V E 0.435
A E 0.712
L E 0.664
V E 0.492
L A 0.234
S B 0.385
D S 0.351
V B 0.425
L G 0.208
G D 0.249
D C 0.340
R B 0.547
L I 0.340
D H 0.548
V H 0.408
I H 0.289
A S 0.276
S C 0.227
G C 0.342
P B 0.195
A S 0.192
W B 0.407
P B 0.468
D E 0.538
S I 0.408
S S 0.286
T B 0.596
S H 0.667
E H 0.875
D H 0.888
A H 0.930
L H 0.955
K H 0.960
V H 0.947
L H 0.892
E H 0.838
K H 0.693
Y B 0.474
G S 0.363
I E 0.231
E S 0.375
T C 0.491
S B 0.710
E H 0.563
S H 0.758
V H 0.700
K H 0.739
R H 0.710
A H 0.541
I H 0.216
L H 0.223
Q B 0.212
E B 0.216
T B 0.243
P E 0.247
K H 0.274
H S 0.254
L E 0.233
S H 0.219
N A 0.246
V E 0.444
E E 0.502
I E 0.472
H E 0.762
L E 0.698
I A 0.388
G B 0.178
N B 0.464
V H 0.338
Q H 0.685
K H 0.795
V H 0.839
C H 0.905
D H 0.936
E H 0.956
A H 0.930
K H 0.937
S H 0.955
L H 0.949
A H 0.908
K H 0.757
E H 0.783
K B 0.669
G S 0.555
F B 0.444
N E 0.332
A E 0.505
E E 0.699
I E 0.555
I E 0.352
T E 0.240
T H 0.379
S H 0.210
L H 0.220
D H 0.327
C H 0.347
E H 0.646
A H 0.743
R H 0.873
E H 0.900
A H 0.809
G H 0.904
R H 0.948
F H 0.954
I H 0.918
A H 0.943
S H 0.978
I H 0.968
M H 0.945
K H 0.951
E H 0.952
V H 0.898
K H 0.773
F H 0.739
K B 0.606
D S 0.436
R B 0.484
P B 0.306
L E 0.259
K C 0.306
K B 0.312
P E 0.572
A E 0.721
A E 0.737
L E 0.558
I A 0.410
F D 0.329
G D 0.244
G S 0.215
E B 0.251
T E 0.348
V E 0.531
V E 0.681
H E 0.638
V E 0.394
K S 0.161
G B 0.171
N S 0.232
G D 0.330
I H 0.140
G S 0.234
G D 0.261
R H 0.203
N H 0.366
Q H 0.655
E H 0.817
L H 0.896
A H 0.916
L H 0.915
S H 0.946
A H 0.902
A H 0.862
I H 0.859
A H 0.686
L H 0.494
E H 0.449
G S 0.544
I E 0.280
E G 0.307
G S 0.623
V E 0.486
I E 0.397
L E 0.516
C E 0.517
S E 0.444
A E 0.237
G S 0.317
T E 0.151
D D 0.200
G S 0.224
T E 0.183
D B 0.222
G D 0.363
P E 0.183
T B 0.297
D H 0.165
A A 0.165
A B 0.205
G S 0.270
G E 0.325
I E 0.424
V B 0.349
D B 0.495
G H 0.510
S H 0.726
T H 0.696
A H 0.885
K H 0.939
T H 0.928
L H 0.920
K H 0.831
A H 0.811
M B 0.535
G S 0.469
E B 0.328
D E 0.356
P H 0.598
Y H 0.853
Q H 0.896
Y H 0.821
L H 0.598
K H 0.596
N H 0.295
N B 0.245
D E 0.229
S H 0.550
Y H 0.842
N H 0.900
A H 0.899
L H 0.873
K H 0.822
K H 0.623
S B 0.245
G H 0.276
A S 0.261
L E 0.284
L E 0.339
I E 0.356
T S 0.176
G C 0.319
P H 0.204
T B 0.188
G S 0.419
T B 0.315
N B 0.244
V I 0.215
N H 0.182
D E 0.317
L E 0.552
I E 0.562
I E 0.640
G E 0.758
L E 0.732
I E 0.430
V E 0.309
END