PFRMAT SS
TARGET T0185
AUTHOR 4069-6308-1312 
METHOD This file is the result of combining several RDB files, specifically
METHOD T0185.t2k.dssp-ebghstl.rdb  (weight 1.53986)
METHOD T0185.t2k.stride-ebghtl.rdb  (weight 1.24869)
METHOD T0185.t2k.str.rdb  (weight 1.53983)
METHOD T0185.t2k.alpha.rdb  (weight 0.659012)
METHOD These files were combined by translating their predictions into EHL
METHOD predictions with tables generated by compare-real, and then combining
METHOD those predictions with weights proportional to their mutual information
METHOD with the EHL alphabet.  The comments from the individual files follow.
METHOD
METHOD Comments from T0185.t2k.dssp-ebghstl.rdb
METHOD ============================================
METHOD TARGET T0185
METHOD Using neural net t2k-5740-IDaaHr-5-15-7-15-9-15-13-ebghstl-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	    7 (1 EBGHSTL )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0185.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 248
METHOD
METHOD ============================================
METHOD Comments from T0185.t2k.stride-ebghtl.rdb
METHOD ============================================
METHOD TARGET T0185
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-ebghtl-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	    6 (1 EBGHTL )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0185.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 248
METHOD
METHOD ============================================
METHOD Comments from T0185.t2k.str.rdb
METHOD ============================================
METHOD TARGET T0185
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-str-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	   13 (1 str )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0185.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 248
METHOD
METHOD ============================================
METHOD Comments from T0185.t2k.alpha.rdb
METHOD ============================================
METHOD TARGET T0185
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-alpha-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	   11 (1 ABCDEFGHIST )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0185.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 248
METHOD
METHOD ============================================
MODEL 1
M C 0.66
E C 0.69
R C 0.84
V C 0.81
P C 0.55
I E 0.43
E E 0.43
N C 0.40
R H 0.66
L H 0.85
H H 0.89
Y H 0.89
F H 0.86
R H 0.81
D H 0.75
T H 0.68
L H 0.52
K C 0.55
R C 0.67
E C 0.76
K C 0.87
K C 0.82
E C 0.50
E E 0.90
F E 0.92
A E 0.92
V E 0.89
T E 0.72
G C 0.73
T C 0.87
D C 0.89
G C 0.89
K C 0.51
T H 0.76
T H 0.88
T H 0.94
T H 0.96
A H 0.96
M H 0.96
V H 0.96
A H 0.96
H H 0.96
V H 0.96
L H 0.95
K H 0.92
H H 0.84
L C 0.54
R C 0.92
K C 0.89
S C 0.83
P C 0.63
T C 0.49
V C 0.40
F C 0.42
L C 0.58
G C 0.71
G C 0.66
I C 0.54
M C 0.53
D C 0.50
S C 0.40
L H 0.48
E H 0.48
H H 0.53
G H 0.55
N H 0.44
Y C 0.50
E C 0.64
K C 0.79
G C 0.86
N C 0.78
G C 0.61
P E 0.88
V E 0.92
V E 0.93
Y E 0.90
E E 0.88
L E 0.70
D C 0.66
E C 0.74
S C 0.81
E C 0.79
E C 0.73
F C 0.56
F C 0.51
S C 0.47
E C 0.46
F C 0.54
S C 0.68
P C 0.68
N C 0.59
Y E 0.91
L E 0.93
I E 0.93
I E 0.90
T E 0.72
N C 0.58
A C 0.76
R C 0.85
G H 0.65
D H 0.71
H H 0.74
L H 0.73
E H 0.63
N H 0.52
Y C 0.70
G C 0.83
N C 0.86
S C 0.75
L H 0.94
T H 0.95
R H 0.95
Y H 0.96
R H 0.96
S H 0.95
A H 0.94
F H 0.95
E H 0.94
K H 0.93
I H 0.91
S H 0.87
R H 0.75
N C 0.52
T C 0.79
D C 0.84
L E 0.65
V E 0.87
V E 0.89
T E 0.81
F C 0.58
A C 0.84
E C 0.89
D C 0.82
E H 0.62
L H 0.61
T H 0.64
S H 0.50
H C 0.56
L C 0.71
G C 0.70
D E 0.65
V E 0.78
T E 0.81
F E 0.72
G E 0.52
V C 0.63
K C 0.79
K C 0.78
G C 0.75
T C 0.59
Y C 0.44
T E 0.57
L E 0.63
E E 0.60
M E 0.63
R E 0.67
S E 0.69
A E 0.66
S E 0.49
R C 0.57
A C 0.71
E C 0.70
Q C 0.52
K E 0.71
A E 0.84
M E 0.89
V E 0.90
E E 0.87
K E 0.71
N C 0.73
G C 0.80
K C 0.50
R E 0.66
Y E 0.70
L E 0.66
E E 0.74
L E 0.78
K E 0.73
L E 0.58
K C 0.59
V C 0.68
P C 0.73
G C 0.67
F H 0.73
H H 0.77
N H 0.87
V H 0.95
L H 0.95
N H 0.96
A H 0.96
L H 0.96
A H 0.96
V H 0.96
I H 0.96
A H 0.96
L H 0.96
F H 0.96
D H 0.95
S H 0.89
L C 0.54
G C 0.93
Y C 0.93
D C 0.92
L H 0.92
A H 0.95
P H 0.95
V H 0.96
L H 0.95
E H 0.94
A H 0.92
L H 0.90
E H 0.83
E H 0.63
F C 0.64
R C 0.74
G C 0.77
V C 0.80
H C 0.81
R C 0.88
R C 0.93
END