% (null) % (c) 1992-2001 Regents of the University of California, Santa Cruz % % Sequence Alignment and Modeling Software System % http://www.cse.ucsc.edu/research/compbio/sam.html % % ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- % R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: % Extension and analysis of the basic method, CABIOS 12:95-107, 1996. % K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting % remote protein homologies, Bioinformatics 14(10):846-856, 1998. % A. Krogh et al., Hidden Markov models in computational biology: % Applications to protein modeling, JMB 235:1501-1531, Feb 1994. % --------------------------------------------------------------------- % T0185.t2k Host: cc63 Mon Sep 2 15:09:05 2002 % karplus Dir: /projects/compbio/experiments/casp5/t0185/t0185-351-400 % --------------------------------------------------------------------- % Sequence-model (global) (SW = 0) % Track 0 Coeff 1.000 File T0185.t2k-w0.5.mod % Track 1 Coeff 0.300 File T0185.t2k.str.mod 1qcrD.1.0 75 -137.99 -137.99 1qcrD.1.1 75 -135.57 -135.57 1ak7.1.0 174 -126.72 -126.72 1ak7.1.1 174 -123.77 -123.77 1g2cQ.1.0 52 -117.29 -117.29 1g2cA.1.0 52 -116.20 -116.20 1qcrD.2.2 75 -139.97 -139.97 1qcrD.2.1 75 -135.09 -135.09 1ak7.2.2 174 -131.97 -131.97 1ak7.2.1 174 -126.12 -126.12 1hpi.2.2 71 -119.64 -119.64 1f3lA.2.2 321 -117.33 -117.33 1qcrD.3.3 75 -138.74 -138.74 1ak7.3.3 174 -132.70 -132.70 1qcrD.3.2 75 -129.97 -129.97 1ak7.3.2 174 -125.86 -125.86 1f3lA.3.3 321 -120.40 -120.40 1qcrD.3.5 75 -118.00 -118.00 1qcrD.4.4 75 -139.04 -139.04 1ak7.4.4 174 -131.53 -131.53 1qcrD.4.3 75 -124.28 -124.28 1ak7.4.3 174 -124.16 -124.16 1f3lA.4.4 321 -119.02 -119.02 1bjx.4.4 110 -117.08 -117.08 1qcrD.5.5 75 -134.41 -134.41 1ak7.5.5 174 -129.26 -129.26 1ak7.5.4 174 -123.63 -123.63 1qcrD.5.4 75 -118.20 -118.20 1bjx.5.5 110 -115.53 -115.53 2bjxA.5.5 110 -115.53 -115.53 1qcrD.6.6 75 -129.43 -129.43 1ak7.6.6 174 -123.30 -123.30 1ak7.6.5 174 -122.63 -122.63 2bjxA.6.6 110 -114.83 -114.83 1bjx.6.6 110 -114.83 -114.83 1ilk.6.6 151 -113.06 -113.06 1qcrD.7.7 75 -124.33 -124.33 1ak7.7.7 174 -118.75 -118.75 1ak7.7.6 174 -117.86 -117.86 2bjxA.7.7 110 -114.54 -114.54 1bjx.7.7 110 -114.54 -114.54 1ilk.7.7 151 -114.10 -114.10 1qcrD.8.8 75 -120.33 -120.33 1g2cO.8.8 52 -114.25 -114.25 1ilk.8.8 151 -114.19 -114.19 2bjxA.8.8 110 -113.43 -113.43 1bjx.8.8 110 -113.43 -113.43 1ak7.8.8 174 -112.81 -112.81 1qcrD.9.9 75 -119.07 -119.07 1g2cO.9.9 52 -115.74 -115.74 1bjx.9.9 110 -115.33 -115.33 2bjxA.9.9 110 -115.33 -115.33 1ilk.9.9 151 -113.92 -113.92 1szt.9.11 68 -110.07 -110.07 1qcrD.10.10 75 -120.69 -120.69 2bjxA.10.10 110 -117.91 -117.91 1bjx.10.10 110 -117.91 -117.91 1g2cO.10.10 52 -117.27 -117.27 1ilk.10.10 151 -116.36 -116.36 3ygsP.10.10 97 -111.18 -111.18 1qcrD.11.11 75 -122.13 -122.13 1bjx.11.11 110 -118.77 -118.77 2bjxA.11.11 110 -118.77 -118.77 1g2cO.11.11 52 -118.56 -118.56 1ilk.11.11 151 -116.52 -116.52 3ygsP.11.11 97 -113.71 -113.71 1qcrD.12.12 75 -124.05 -124.05 2bjxA.12.12 110 -120.64 -120.64 1bjx.12.12 110 -120.64 -120.64 1g2cO.12.12 52 -119.03 -119.03 3ygsP.12.12 97 -117.32 -117.32 1ilk.12.12 151 -117.02 -117.02 1qcrD.13.13 75 -127.11 -127.11 2bjxA.13.13 110 -120.35 -120.35 1bjx.13.13 110 -120.35 -120.35 3ygsP.13.13 97 -120.06 -120.06 1g2cO.13.13 52 -117.69 -117.69 1i8oA.13.14 114 -117.39 -117.39 1qcrD.14.14 75 -127.28 -127.28 3ygsP.14.14 97 -121.64 -121.64 2bjxA.14.14 110 -121.06 -121.06 1bjx.14.14 110 -121.06 -121.06 1g2cO.14.14 52 -117.91 -117.91 1i8oA.14.15 114 -117.74 -117.74 1qcrD.15.15 75 -129.38 -129.38 3ygsP.15.15 97 -122.91 -122.91 1bjx.15.15 110 -122.07 -122.07 2bjxA.15.15 110 -122.07 -122.07 1a8s.15.16 273 -118.60 -118.60 1i8oA.15.16 114 -118.41 -118.41 1qcrD.16.16 75 -129.67 -129.67 3ygsP.16.16 97 -123.72 -123.72 1bjx.16.16 110 -122.43 -122.43 2bjxA.16.16 110 -122.43 -122.43 1i8oA.16.17 114 -119.40 -119.40 1hh7A.16.17 114 -118.99 -118.99 1qcrD.17.17 75 -128.29 -128.29 3ygsP.17.17 97 -123.05 -123.05 2bjxA.17.17 110 -120.56 -120.56 1bjx.17.17 110 -120.56 -120.56 1i8oA.17.18 114 -119.17 -119.17 1hh7A.17.18 114 -118.75 -118.75 1qcrD.18.18 75 -125.94 -125.94 3ygsP.18.18 97 -124.98 -124.98 1mdyA.18.19 68 -120.62 -120.62 1i8oA.18.19 114 -120.49 -120.49 1hh7A.18.19 114 -120.06 -120.06 1bjx.18.18 110 -118.76 -118.76 3ygsP.19.19 97 -125.57 -125.57 1mdyA.19.20 68 -125.28 -125.28 1qcrD.19.19 75 -123.05 -123.05 1i8oA.19.20 114 -121.12 -121.12 1hh7A.19.20 114 -120.69 -120.69 1aa7A.19.21 158 -120.25 -120.25 1mdyA.20.21 68 -130.57 -130.57 3ygsP.20.20 97 -125.50 -125.50 1szt.20.21 68 -124.78 -124.78 1aa7A.20.22 158 -123.15 -123.15 1av1A.20.23 201 -122.95 -122.95 1i8oA.20.21 114 -122.18 -122.18 1mdyA.21.22 68 -134.61 -134.61 1szt.21.22 68 -130.30 -130.30 1hx1B.21.21 114 -126.64 -126.64 1av1A.21.24 201 -126.51 -126.51 3ygsP.21.21 97 -124.85 -124.85 1aa7A.21.23 158 -124.46 -124.46 1mdyA.22.23 68 -139.76 -139.76 1szt.22.23 68 -135.05 -135.05 1av1A.22.25 201 -130.46 -130.46 1aa7A.22.24 158 -129.74 -129.74 1hx1B.22.22 114 -128.56 -128.56 1k34A.22.23 68 -126.71 -126.71 1mdyA.23.24 68 -142.13 -142.13 1szt.23.24 68 -139.17 -139.17 1aa7A.23.25 158 -131.77 -131.77 1av1A.23.26 201 -130.87 -130.87 1hx1B.23.23 114 -128.90 -128.90 1k34A.23.24 68 -128.88 -128.88 1mdyA.24.25 68 -144.08 -144.08 1szt.24.25 68 -143.05 -143.05 1av1A.24.27 201 -133.84 -133.84 1aa7A.24.26 158 -133.65 -133.65 1k34A.24.25 68 -130.28 -130.28 1auuA.24.24 55 -130.08 -130.08 1szt.25.26 68 -145.56 -145.56 1mdyA.25.26 68 -143.01 -143.01 1aa7A.25.27 158 -133.50 -133.50 1av1A.25.28 201 -133.31 -133.31 1dcnD.25.25 436 -132.32 -132.32 1auuA.25.25 55 -131.49 -131.49 1szt.26.27 68 -150.29 -150.29 1mdyA.26.27 68 -141.49 -141.49 1dcnD.26.26 436 -135.38 -135.38 1i27A.26.29 73 -133.49 -133.49 1av1A.26.29 201 -133.47 -133.47 1aa7A.26.28 158 -133.30 -133.30 1szt.27.28 68 -155.24 -155.24 1dcnD.27.27 436 -138.07 -138.07 1mdyA.27.28 68 -137.70 -137.70 1i27A.27.30 73 -137.60 -137.60 1k34A.27.28 68 -134.38 -134.38 1aa7A.27.29 158 -132.60 -132.60 1szt.28.29 68 -160.83 -160.83 1i27A.28.31 73 -140.52 -140.52 1dcnD.28.28 436 -139.78 -139.78 1k34A.28.29 68 -137.21 -137.21 1aa7A.28.30 158 -132.02 -132.02 1mdyA.28.29 68 -131.98 -131.98 1szt.29.30 68 -163.91 -163.91 1i27A.29.32 73 -142.24 -142.24 1dcnD.29.29 436 -140.57 -140.57 1k34A.29.30 68 -139.86 -139.86 1df4A.29.30 68 -134.52 -134.52 1i8oA.29.30 114 -131.85 -131.85 1szt.30.31 68 -166.11 -166.11 1i27A.30.33 73 -142.52 -142.52 1k34A.30.31 68 -141.97 -141.97 1dcnD.30.30 436 -140.51 -140.51 1df4A.30.31 68 -136.40 -136.40 1i8oA.30.31 114 -133.24 -133.24 1szt.31.32 68 -167.31 -167.31 1k34A.31.32 68 -144.10 -144.10 1dcnD.31.31 436 -139.44 -139.44 1i27A.31.34 73 -138.57 -138.57 1df4A.31.32 68 -138.29 -138.29 1i8oA.31.32 114 -133.38 -133.38 1szt.32.33 68 -168.67 -168.67 1k34A.32.33 68 -146.21 -146.21 1df4A.32.33 68 -140.13 -140.13 1dcnD.32.32 436 -138.25 -138.25 1i27A.32.35 73 -134.14 -134.14 1i8oA.32.33 114 -133.05 -133.05 1szt.33.34 68 -174.09 -174.09 1k34A.33.34 68 -149.52 -149.52 1df4A.33.34 68 -143.04 -143.04 1dcnD.33.33 436 -136.12 -136.12 1a8rA.33.35 221 -132.88 -132.88 2nef.33.38 136 -132.52 -132.52 1szt.34.35 68 -177.91 -177.91 1k34A.34.35 68 -152.34 -152.34 1df4A.34.35 68 -145.51 -145.51 1aoy.34.38 78 -132.29 -132.29 1ilk.34.35 151 -132.18 -132.18 1urnA.34.36 97 -132.01 -132.01 1szt.35.36 68 -179.66 -179.66 1k34A.35.36 68 -155.57 -155.57 1df4A.35.36 68 -148.54 -148.54 1ilk.35.36 151 -132.93 -132.93 1aoy.35.39 78 -132.26 -132.26 1urnA.35.37 97 -132.18 -132.18 1szt.36.37 68 -178.71 -178.71 1k34A.36.37 68 -157.22 -157.22 1df4A.36.37 68 -149.87 -149.87 1oasA.36.43 322 -135.20 -135.20 1ilk.36.37 151 -133.59 -133.59 1urnA.36.38 97 -133.18 -133.18 1szt.37.38 68 -176.77 -176.77 1k34A.37.38 68 -157.48 -157.48 1df4A.37.38 68 -149.98 -149.98 1oasA.37.44 322 -136.67 -136.67 1urnA.37.39 97 -134.68 -134.68 1fcjA.37.44 322 -133.33 -133.33 1szt.38.39 68 -172.84 -172.84 1k34A.38.39 68 -156.71 -156.71 1df4A.38.39 68 -149.22 -149.22 1urnA.38.40 97 -138.68 -138.68 1oasA.38.45 322 -136.53 -136.53 1fcjA.38.45 322 -133.18 -133.18 1szt.39.40 68 -166.54 -166.54 1k34A.39.40 68 -154.35 -154.35 1df4A.39.40 68 -146.74 -146.74 1urnA.39.41 97 -141.58 -141.58 1oasA.39.46 322 -134.27 -134.27 1fht.39.41 116 -132.68 -132.68 1szt.40.41 68 -158.68 -158.68 1k34A.40.41 68 -150.77 -150.77 1urnA.40.42 97 -143.54 -143.54 1df4A.40.41 68 -143.01 -143.01 1fht.40.42 116 -134.35 -134.35 1ilk.40.41 151 -130.75 -130.75 1szt.41.42 68 -145.61 -145.61 1urnA.41.43 97 -145.12 -145.12 1k34A.41.42 68 -142.22 -142.22 1fht.41.43 116 -135.94 -135.94 1df4A.41.42 68 -134.26 -134.26 1aoy.41.45 78 -132.85 -132.85