PFRMAT SS TARGET T0185 METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-ebghtl-seeded.net METHOD This is a 4-layer network, with METHOD window units METHOD 5 15 METHOD 7 15 METHOD 9 15 METHOD 13 6 (1 EBGHTL ) METHOD The input amino acid frequencies were determined from METHOD alignment T0185.t2k-thin90.a2m.gz METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1) METHOD Counts were regularized to probabilities using METHOD /projects/compbio/lib/recode3.20comp METHOD Total sequence weight for alignment was 271 METHOD MODEL 1 M C 0.855 K E 0.540 I E 0.938 H E 0.978 F E 0.987 V E 0.942 G E 0.669 I C 0.375 G T 0.509 G T 0.436 I H 0.425 G H 0.565 M H 0.923 S H 0.961 A H 0.993 V H 0.998 A H 0.997 L H 0.998 H H 0.997 E H 0.996 F H 0.988 S H 0.957 N H 0.808 G C 0.901 N C 0.834 D E 0.480 V E 0.894 Y E 0.933 G E 0.919 S E 0.802 N E 0.403 I T 0.491 E T 0.547 E T 0.539 T T 0.405 E C 0.405 R H 0.529 T H 0.636 A H 0.753 Y H 0.816 L H 0.780 R H 0.749 K H 0.714 L H 0.662 G C 0.621 I C 0.446 P E 0.652 I E 0.607 F E 0.555 V T 0.395 P T 0.515 H C 0.553 S C 0.400 A G 0.387 D G 0.536 N G 0.536 W G 0.389 Y T 0.517 D T 0.573 P C 0.427 D E 0.730 L E 0.988 V E 0.994 I E 0.990 K E 0.932 T E 0.443 P T 0.492 A T 0.461 V T 0.403 R T 0.814 D T 0.866 D T 0.879 N T 0.723 P H 0.587 E H 0.735 I H 0.796 V H 0.849 R H 0.911 A H 0.939 R H 0.938 M H 0.934 E H 0.923 R C 0.732 V C 0.583 P C 0.355 I H 0.514 E H 0.491 N H 0.532 R H 0.718 L H 0.804 H H 0.857 Y H 0.889 F H 0.875 R H 0.854 D H 0.798 T H 0.674 L H 0.347 K T 0.474 R T 0.585 E T 0.639 K C 0.473 K C 0.551 E E 0.489 E E 0.938 F E 0.973 A E 0.972 V E 0.932 T E 0.682 G C 0.406 T T 0.628 D T 0.564 G C 0.465 K H 0.712 T H 0.912 T H 0.990 T H 0.999 T H 1.000 A H 1.000 M H 1.000 V H 1.000 A H 0.999 H H 0.999 V H 0.997 L H 0.993 K H 0.967 H H 0.949 L H 0.839 R C 0.865 K C 0.776 S C 0.535 P E 0.398 T E 0.579 V E 0.708 F E 0.644 L E 0.429 G T 0.359 G C 0.399 I C 0.367 M C 0.352 D C 0.424 S H 0.399 L H 0.473 E H 0.510 H H 0.510 G H 0.467 N H 0.449 Y H 0.374 E T 0.412 K T 0.636 G T 0.621 N T 0.495 G C 0.565 P E 0.963 V E 0.992 V E 0.995 Y E 0.988 E E 0.958 L E 0.748 D T 0.581 E T 0.749 S T 0.792 E T 0.742 E T 0.462 F E 0.390 F E 0.358 S E 0.495 E E 0.500 F C 0.341 S T 0.484 P T 0.559 N E 0.527 Y E 0.963 L E 0.983 I E 0.984 I E 0.938 T E 0.817 N C 0.557 A C 0.712 R C 0.835 G H 0.356 D H 0.545 H H 0.496 L H 0.741 E H 0.736 N T 0.388 Y T 0.645 G T 0.695 N T 0.630 S T 0.437 L H 0.947 T H 0.962 R H 0.966 Y H 0.981 R H 0.978 S H 0.963 A H 0.953 F H 0.980 E H 0.974 K H 0.975 I H 0.948 S H 0.925 R H 0.898 N H 0.639 T C 0.525 D C 0.692 L E 0.666 V E 0.947 V E 0.961 T E 0.924 F E 0.528 A T 0.604 E C 0.490 D T 0.638 E H 0.423 L G 0.441 T G 0.552 S H 0.357 H T 0.400 L C 0.414 G C 0.415 D E 0.648 V E 0.844 T E 0.935 F E 0.895 G E 0.726 V E 0.418 K T 0.517 K T 0.715 G T 0.633 T T 0.402 Y E 0.582 T E 0.752 L E 0.886 E E 0.812 M E 0.838 R E 0.851 S E 0.895 A E 0.901 S E 0.770 R T 0.428 A T 0.685 E T 0.604 Q E 0.631 K E 0.890 A E 0.955 M E 0.954 V E 0.958 E E 0.913 K E 0.682 N T 0.613 G T 0.667 K T 0.400 R E 0.654 Y E 0.680 L E 0.521 E E 0.646 L E 0.751 K E 0.693 L E 0.532 K C 0.522 V C 0.601 P C 0.631 G C 0.712 F H 0.905 H H 0.929 N H 0.995 V H 0.999 L H 0.999 N H 1.000 A H 1.000 L H 1.000 A H 1.000 V H 1.000 I H 1.000 A H 1.000 L H 0.999 F H 0.998 D H 0.994 S H 0.987 L H 0.918 G C 0.964 Y C 0.956 D C 0.960 L H 0.942 A H 0.965 P H 0.968 V H 0.992 L H 0.992 E H 0.983 A H 0.977 L H 0.951 E H 0.877 E H 0.616 F C 0.425 R C 0.513 G C 0.469 V T 0.543 H T 0.496 R T 0.487 R T 0.316 F E 0.336 S E 0.512 I E 0.495 A E 0.443 F E 0.458 H E 0.302 D T 0.435 P T 0.581 E T 0.677 T T 0.732 N T 0.574 I E 0.623 Y E 0.932 V E 0.966 I E 0.925 D E 0.777 D T 0.515 Y T 0.799 A T 0.800 H T 0.704 T C 0.622 P H 0.877 D H 0.934 E H 0.984 I H 0.997 R H 0.998 N H 0.997 L H 0.997 L H 0.997 Q H 0.996 T H 0.997 A H 0.989 K H 0.975 E H 0.903 V H 0.613 F T 0.650 E T 0.811 N T 0.839 E T 0.565 K E 0.869 I E 0.968 V E 0.981 V E 0.967 I E 0.807 F E 0.431 Q C 0.437 P C 0.452 H T 0.538 R T 0.631 Y T 0.587 S T 0.479 R T 0.337 L C 0.392 E H 0.629 R H 0.687 E H 0.747 D H 0.773 G H 0.786 N H 0.782 F H 0.607 A H 0.408 K T 0.366 A T 0.484 L T 0.556 Q T 0.515 L T 0.391 A H 0.392 D H 0.425 E H 0.666 V H 0.729 V H 0.790 V H 0.796 T H 0.718 E H 0.728 V H 0.743 Y H 0.545 D H 0.445 A H 0.540 F H 0.552 E H 0.395 E H 0.458 K H 0.592 K H 0.722 N H 0.776 G H 0.689 I H 0.755 S H 0.726 G H 0.806 K H 0.824 M H 0.774 I H 0.755 W H 0.662 D H 0.689 S H 0.652 L H 0.490 K E 0.464 S E 0.418 L C 0.321 G C 0.436 K T 0.455 E C 0.459 A T 0.451 Y C 0.412 F C 0.407 V C 0.400 E C 0.524 K H 0.661 L H 0.806 P H 0.851 E H 0.888 L H 0.924 E H 0.941 K H 0.926 V H 0.921 I H 0.921 S H 0.910 V H 0.889 S H 0.831 E H 0.813 N H 0.790 T H 0.700 V H 0.635 F H 0.624 L H 0.629 F H 0.547 V H 0.485 G H 0.449 A H 0.359 G C 0.361 D C 0.381 I C 0.381 I C 0.484 Y H 0.686 S H 0.772 S H 0.879 R H 0.976 R H 0.981 F H 0.978 V H 0.973 E H 0.966 R H 0.929 Y H 0.864 Q H 0.679 S C 0.459 S T 0.801 K T 0.889 S T 0.914 S T 0.491 P E 0.961 S E 0.990 R E 0.990 V E 0.969 L E 0.698 G C 0.590 S C 0.753 N C 0.820 K C 0.944 END