PFRMAT SS
TARGET T0185
AUTHOR 4069-6308-1312 
METHOD This file is the result of combining several RDB files, specifically
METHOD T0185.t2k.dssp-ebghstl.rdb  (weight 1.53986)
METHOD T0185.t2k.stride-ebghtl.rdb  (weight 1.24869)
METHOD T0185.t2k.str.rdb  (weight 1.53983)
METHOD T0185.t2k.alpha.rdb  (weight 0.659012)
METHOD These files were combined by translating their predictions into EHL
METHOD predictions with tables generated by compare-real, and then combining
METHOD those predictions with weights proportional to their mutual information
METHOD with the EHL alphabet.  The comments from the individual files follow.
METHOD
METHOD Comments from T0185.t2k.dssp-ebghstl.rdb
METHOD ============================================
METHOD TARGET T0185
METHOD Using neural net t2k-5740-IDaaHr-5-15-7-15-9-15-13-ebghstl-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	    7 (1 EBGHSTL )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0185.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 271
METHOD
METHOD ============================================
METHOD Comments from T0185.t2k.stride-ebghtl.rdb
METHOD ============================================
METHOD TARGET T0185
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-ebghtl-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	    6 (1 EBGHTL )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0185.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 271
METHOD
METHOD ============================================
METHOD Comments from T0185.t2k.str.rdb
METHOD ============================================
METHOD TARGET T0185
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-str-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	   13 (1 str )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0185.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 271
METHOD
METHOD ============================================
METHOD Comments from T0185.t2k.alpha.rdb
METHOD ============================================
METHOD TARGET T0185
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-alpha-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	   11 (1 ABCDEFGHIST )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0185.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 271
METHOD
METHOD ============================================
MODEL 1
M C 0.84
K E 0.53
I E 0.87
H E 0.92
F E 0.93
V E 0.87
G E 0.74
I C 0.55
G C 0.80
G C 0.70
I C 0.62
G C 0.49
M H 0.88
S H 0.93
A H 0.95
V H 0.96
A H 0.96
L H 0.96
H H 0.95
E H 0.94
F H 0.90
S H 0.79
N C 0.59
G C 0.92
N C 0.85
D E 0.56
V E 0.86
Y E 0.88
G E 0.87
S E 0.72
N C 0.63
I C 0.72
E C 0.74
E C 0.75
T C 0.81
E C 0.75
R C 0.49
T H 0.57
A H 0.69
Y H 0.75
L H 0.72
R H 0.69
K H 0.65
L C 0.47
G C 0.80
I C 0.67
P E 0.64
I E 0.67
F E 0.54
V C 0.65
P C 0.80
H C 0.81
S C 0.77
A H 0.68
D H 0.72
N H 0.72
W H 0.58
Y C 0.63
D C 0.86
P C 0.82
D C 0.57
L E 0.92
V E 0.93
I E 0.92
K E 0.81
T C 0.70
P C 0.84
A C 0.82
V C 0.81
R C 0.88
D C 0.82
D C 0.84
N C 0.82
P H 0.56
E H 0.69
I H 0.78
V H 0.84
R H 0.86
A H 0.86
R H 0.86
M H 0.81
E H 0.53
R C 0.84
V C 0.80
P C 0.52
I H 0.55
E H 0.58
N H 0.60
R H 0.79
L H 0.88
H H 0.91
Y H 0.91
F H 0.89
R H 0.85
D H 0.75
T H 0.61
L C 0.60
K C 0.63
R C 0.69
E C 0.75
K C 0.86
K C 0.81
E C 0.51
E E 0.90
F E 0.92
A E 0.92
V E 0.89
T E 0.72
G C 0.73
T C 0.87
D C 0.89
G C 0.89
K C 0.50
T H 0.78
T H 0.89
T H 0.94
T H 0.96
A H 0.96
M H 0.96
V H 0.96
A H 0.96
H H 0.96
V H 0.96
L H 0.95
K H 0.93
H H 0.85
L C 0.56
R C 0.93
K C 0.88
S C 0.69
P C 0.49
T E 0.57
V E 0.65
F E 0.55
L C 0.56
G C 0.70
G C 0.70
I C 0.66
M C 0.62
D C 0.64
S C 0.54
L C 0.45
E H 0.42
H H 0.42
G H 0.42
N E 0.40
Y E 0.37
E C 0.58
K C 0.80
G C 0.86
N C 0.77
G C 0.61
P E 0.88
V E 0.92
V E 0.93
Y E 0.90
E E 0.88
L E 0.70
D C 0.66
E C 0.75
S C 0.82
E C 0.80
E C 0.74
F C 0.56
F C 0.50
S C 0.45
E E 0.52
F C 0.49
S C 0.64
P C 0.64
N C 0.53
Y E 0.91
L E 0.93
I E 0.93
I E 0.90
T E 0.71
N C 0.58
A C 0.76
R C 0.85
G H 0.70
D H 0.75
H H 0.78
L H 0.78
E H 0.68
N H 0.56
Y C 0.69
G C 0.84
N C 0.86
S C 0.78
L H 0.94
T H 0.95
R H 0.95
Y H 0.96
R H 0.96
S H 0.95
A H 0.94
F H 0.94
E H 0.94
K H 0.93
I H 0.90
S H 0.86
R H 0.75
N C 0.51
T C 0.79
D C 0.83
L E 0.67
V E 0.87
V E 0.90
T E 0.81
F C 0.56
A C 0.84
E C 0.89
D C 0.81
E H 0.63
L H 0.62
T H 0.64
S H 0.49
H C 0.58
L C 0.71
G C 0.68
D E 0.71
V E 0.82
T E 0.84
F E 0.75
G E 0.53
V C 0.64
K C 0.81
K C 0.80
G C 0.78
T C 0.63
Y E 0.54
T E 0.73
L E 0.79
E E 0.73
M E 0.74
R E 0.76
S E 0.81
A E 0.81
S E 0.64
R C 0.57
A C 0.79
E C 0.76
Q E 0.52
K E 0.83
A E 0.88
M E 0.90
V E 0.90
E E 0.87
K E 0.68
N C 0.76
G C 0.80
K C 0.52
R E 0.63
Y E 0.65
L E 0.56
E E 0.68
L E 0.76
K E 0.74
L E 0.63
K C 0.57
V C 0.67
P C 0.73
G C 0.68
F H 0.71
H H 0.76
N H 0.86
V H 0.94
L H 0.95
N H 0.96
A H 0.96
L H 0.96
A H 0.96
V H 0.96
I H 0.96
A H 0.96
L H 0.96
F H 0.96
D H 0.95
S H 0.89
L C 0.54
G C 0.93
Y C 0.94
D C 0.92
L H 0.92
A H 0.95
P H 0.95
V H 0.96
L H 0.95
E H 0.94
A H 0.93
L H 0.90
E H 0.83
E H 0.62
F C 0.66
R C 0.76
G C 0.79
V C 0.79
H C 0.75
R C 0.70
R C 0.48
F E 0.52
S E 0.62
I E 0.63
A E 0.57
F E 0.49
H C 0.56
D C 0.69
P C 0.69
E C 0.69
T C 0.79
N C 0.81
I E 0.55
Y E 0.86
V E 0.91
I E 0.89
D E 0.81
D C 0.56
Y C 0.80
A C 0.86
H C 0.88
T C 0.89
P H 0.74
D H 0.90
E H 0.93
I H 0.96
R H 0.96
N H 0.96
L H 0.96
L H 0.96
Q H 0.96
T H 0.95
A H 0.94
K H 0.92
E H 0.81
V H 0.61
F C 0.75
E C 0.85
N C 0.91
E C 0.78
K E 0.77
I E 0.91
V E 0.92
V E 0.91
I E 0.81
F C 0.52
Q C 0.75
P C 0.77
H C 0.76
R C 0.72
Y C 0.69
S C 0.63
R C 0.61
L C 0.58
E H 0.72
R H 0.76
E H 0.75
D H 0.77
G H 0.77
N H 0.76
F H 0.62
A C 0.53
K C 0.64
A C 0.70
L C 0.75
Q C 0.74
L C 0.65
A C 0.52
D C 0.48
E H 0.73
V H 0.80
V H 0.81
V H 0.79
T H 0.77
E H 0.79
V H 0.76
Y H 0.60
D H 0.52
A H 0.55
F H 0.50
E C 0.48
E C 0.46
K H 0.50
K H 0.65
N H 0.70
G H 0.72
I H 0.76
S H 0.73
G H 0.83
K H 0.85
M H 0.84
I H 0.85
W H 0.85
D H 0.85
S H 0.82
L H 0.73
K H 0.67
S H 0.59
L C 0.47
G C 0.80
K C 0.83
E C 0.82
A C 0.73
Y C 0.66
F C 0.63
V C 0.67
E C 0.73
K H 0.68
L H 0.84
P H 0.87
E H 0.89
L H 0.91
E H 0.93
K H 0.92
V H 0.91
I H 0.91
S H 0.89
V H 0.87
S H 0.84
E H 0.82
N H 0.75
T H 0.69
V H 0.63
F H 0.60
L H 0.57
F H 0.51
V H 0.47
G C 0.41
A C 0.51
G C 0.64
D C 0.61
I C 0.58
I C 0.63
Y H 0.73
S H 0.81
S H 0.86
R H 0.92
R H 0.94
F H 0.95
V H 0.95
E H 0.94
R H 0.92
Y H 0.85
Q H 0.66
S C 0.66
S C 0.89
K C 0.86
S C 0.93
S C 0.70
P E 0.88
S E 0.93
R E 0.92
V E 0.89
L E 0.61
G C 0.70
S C 0.84
N C 0.89
K C 0.92
END