PFRMAT SS
TARGET T0185
AUTHOR 4069-6308-1312
METHOD Using neural net t2k-5740-IDaaHr-5-15-7-15-9-15-13-ebghstl-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	    7 (1 EBGHSTL )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0185.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 271
METHOD
MODEL 1
M C 0.675
K E 0.535
I E 0.920
H E 0.980
F E 0.987
V E 0.967
G E 0.821
I E 0.503
G C 0.372
G T 0.382
I T 0.322
G H 0.321
M H 0.871
S H 0.948
A H 0.978
V H 0.986
A H 0.987
L H 0.985
H H 0.985
E H 0.969
F H 0.890
S H 0.685
N T 0.660
G T 0.809
N C 0.865
D E 0.589
V E 0.914
Y E 0.955
G E 0.933
S E 0.732
N C 0.577
I C 0.481
E T 0.385
E C 0.275
T C 0.598
E C 0.613
R H 0.373
T H 0.545
A H 0.679
Y H 0.775
L H 0.753
R H 0.715
K H 0.654
L H 0.431
G T 0.725
I C 0.597
P E 0.629
I E 0.682
F E 0.512
V C 0.299
P C 0.331
H C 0.493
S C 0.588
A H 0.376
D G 0.428
N G 0.484
W G 0.320
Y T 0.425
D T 0.580
P C 0.836
D S 0.468
L E 0.982
V E 0.992
I E 0.989
K E 0.886
T C 0.683
P S 0.360
A T 0.396
V C 0.723
R C 0.845
D T 0.502
D T 0.493
N C 0.514
P H 0.501
E H 0.711
I H 0.836
V H 0.881
R H 0.896
A H 0.905
R H 0.916
M H 0.882
E H 0.537
R T 0.647
V C 0.862
P C 0.513
I H 0.437
E H 0.476
N H 0.547
R H 0.794
L H 0.899
H H 0.927
Y H 0.930
F H 0.930
R H 0.870
D H 0.706
T H 0.578
L C 0.342
K T 0.406
R T 0.441
E C 0.286
K C 0.429
K C 0.645
E C 0.428
E E 0.947
F E 0.986
A E 0.987
V E 0.962
T E 0.782
G C 0.627
T S 0.444
D S 0.625
G S 0.717
K H 0.540
T H 0.711
T H 0.852
T H 0.954
T H 0.994
A H 0.995
M H 0.997
V H 0.997
A H 0.997
H H 0.996
V H 0.996
L H 0.993
K H 0.961
H H 0.859
L T 0.657
R T 0.748
K C 0.761
S C 0.654
P C 0.387
T E 0.439
V E 0.517
F E 0.470
L T 0.269
G C 0.287
G C 0.246
I C 0.290
M C 0.343
D C 0.338
S C 0.370
L H 0.330
E H 0.391
H H 0.323
G H 0.382
N H 0.365
Y H 0.348
E C 0.324
K T 0.330
G T 0.430
N C 0.525
G C 0.398
P E 0.922
V E 0.984
V E 0.994
Y E 0.989
E E 0.936
L E 0.697
D C 0.358
E T 0.395
S T 0.406
E C 0.398
E C 0.335
F C 0.254
F C 0.366
S E 0.359
E E 0.584
F E 0.680
S E 0.580
P E 0.454
N E 0.521
Y E 0.985
L E 0.996
I E 0.996
I E 0.972
T E 0.777
N E 0.438
A C 0.568
R C 0.662
G G 0.539
D G 0.609
H G 0.630
L G 0.437
E G 0.392
N G 0.439
Y T 0.287
G T 0.665
N S 0.392
S C 0.610
L H 0.985
T H 0.993
R H 0.994
Y H 0.997
R H 0.993
S H 0.989
A H 0.984
F H 0.983
E H 0.971
K H 0.952
I H 0.936
S H 0.872
R H 0.703
N H 0.429
T C 0.395
D C 0.417
L E 0.578
V E 0.851
V E 0.916
T E 0.802
F C 0.564
A T 0.355
E S 0.384
D C 0.580
E H 0.534
L H 0.448
T G 0.419
S H 0.401
H H 0.288
L C 0.474
G C 0.456
D E 0.758
V E 0.861
T E 0.828
F E 0.718
G E 0.380
V C 0.460
K C 0.636
K S 0.362
G T 0.344
T C 0.282
Y E 0.517
T E 0.732
L E 0.735
E E 0.728
M E 0.662
R E 0.765
S E 0.841
A E 0.843
S E 0.677
R E 0.362
A T 0.537
E T 0.330
Q E 0.534
K E 0.862
A E 0.946
M E 0.964
V E 0.946
E E 0.913
K E 0.729
N T 0.478
G T 0.544
K E 0.447
R E 0.674
Y E 0.747
L E 0.657
E E 0.771
L E 0.892
K E 0.889
L E 0.776
K E 0.480
V C 0.400
P C 0.557
G H 0.312
F H 0.806
H H 0.888
N H 0.952
V H 0.975
L H 0.990
N H 0.995
A H 0.997
L H 0.998
A H 0.998
V H 0.998
I H 0.999
A H 0.998
L H 0.998
F H 0.998
D H 0.993
S H 0.914
L T 0.599
G T 0.846
Y C 0.738
D C 0.931
L H 0.946
A H 0.973
P H 0.973
V H 0.990
L H 0.982
E H 0.962
A H 0.944
L H 0.885
E H 0.737
E H 0.595
F H 0.313
R C 0.390
G C 0.338
V C 0.623
H T 0.520
R T 0.499
R C 0.316
F E 0.604
S E 0.753
I E 0.775
A E 0.669
F E 0.512
H C 0.275
D C 0.441
P C 0.474
E T 0.306
T T 0.478
N S 0.329
I E 0.571
Y E 0.889
V E 0.944
I E 0.948
D E 0.809
D C 0.562
Y T 0.411
A T 0.358
H S 0.435
T C 0.522
P H 0.660
D H 0.924
E H 0.963
I H 0.994
R H 0.997
N H 0.996
L H 0.995
L H 0.996
Q H 0.991
T H 0.974
A H 0.954
K H 0.882
E H 0.798
V H 0.626
F C 0.357
E T 0.689
N T 0.740
E C 0.465
K E 0.775
I E 0.957
V E 0.978
V E 0.971
I E 0.888
F E 0.592
Q C 0.476
P C 0.435
H C 0.361
R T 0.339
Y T 0.294
S C 0.286
R C 0.331
L C 0.478
E H 0.830
R H 0.838
E H 0.838
D H 0.832
G H 0.764
N H 0.721
F H 0.536
A T 0.534
K T 0.459
A C 0.501
L C 0.379
Q T 0.279
L H 0.339
A H 0.545
D H 0.556
E H 0.872
V H 0.874
V H 0.847
V H 0.843
T H 0.819
E H 0.796
V H 0.764
Y H 0.581
D H 0.455
A H 0.489
F H 0.495
E H 0.485
E H 0.500
K H 0.606
K H 0.678
N H 0.728
G H 0.729
I H 0.730
S H 0.760
G H 0.848
K H 0.871
M H 0.889
I H 0.900
W H 0.909
D H 0.909
S H 0.909
L H 0.886
K H 0.860
S H 0.808
L H 0.567
G C 0.344
K C 0.397
E C 0.444
A C 0.437
Y C 0.309
F C 0.309
V C 0.396
E C 0.638
K H 0.656
L H 0.835
P H 0.862
E H 0.902
L H 0.935
E H 0.947
K H 0.949
V H 0.948
I H 0.943
S H 0.894
V H 0.872
S H 0.828
E H 0.817
N H 0.739
T H 0.714
V H 0.646
F H 0.584
L H 0.526
F H 0.510
V H 0.514
G H 0.464
A H 0.340
G C 0.319
D C 0.292
I C 0.272
I C 0.431
Y H 0.611
S H 0.775
S H 0.852
R H 0.896
R H 0.957
F H 0.972
V H 0.979
E H 0.972
R H 0.924
Y H 0.801
Q H 0.563
S C 0.445
S C 0.765
K T 0.663
S T 0.841
S C 0.424
P E 0.940
S E 0.988
R E 0.987
V E 0.970
L E 0.726
G C 0.540
S C 0.582
N C 0.882
K C 0.998
END