PFRMAT SS
TARGET T0185
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-alpha-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	   11 (1 ABCDEFGHIST )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0185.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 271
METHOD
MODEL 1
M B 0.287
K E 0.539
I E 0.710
H E 0.745
F E 0.463
V S 0.234
G E 0.275
I S 0.298
G D 0.384
G S 0.229
I H 0.350
G S 0.318
M H 0.675
S H 0.831
A H 0.918
V H 0.940
A H 0.946
L H 0.955
H H 0.943
E H 0.906
F H 0.793
S H 0.674
N B 0.596
G T 0.498
N E 0.388
D E 0.466
V A 0.550
Y E 0.512
G E 0.507
S E 0.355
N E 0.409
I I 0.337
E H 0.191
E B 0.161
T B 0.408
E B 0.421
R H 0.530
T H 0.487
A H 0.656
Y H 0.803
L H 0.774
R H 0.651
K H 0.618
L B 0.473
G T 0.350
I B 0.329
P E 0.428
I E 0.322
F E 0.264
V B 0.198
P H 0.199
H H 0.201
S B 0.220
A I 0.492
D H 0.562
N H 0.401
W H 0.221
Y G 0.204
D S 0.640
P E 0.492
D E 0.257
L E 0.677
V E 0.808
I E 0.592
K E 0.247
T B 0.302
P I 0.200
A S 0.160
V B 0.345
R B 0.371
D H 0.341
D S 0.516
N E 0.334
P H 0.486
E H 0.572
I H 0.695
V H 0.783
R H 0.796
A H 0.778
R H 0.651
M H 0.508
E B 0.417
R S 0.501
V B 0.482
P H 0.356
I H 0.604
E H 0.751
N H 0.817
R H 0.915
L H 0.926
H H 0.932
Y H 0.927
F H 0.793
R H 0.724
D H 0.645
T H 0.271
L A 0.162
K H 0.389
R S 0.253
E B 0.203
K S 0.298
K E 0.391
E E 0.447
E E 0.619
F E 0.736
A E 0.569
V A 0.338
T S 0.187
G D 0.290
T I 0.281
D B 0.174
G S 0.504
K H 0.276
T H 0.488
T H 0.717
T H 0.850
T H 0.924
A H 0.963
M H 0.973
V H 0.952
A H 0.955
H H 0.974
V H 0.946
L H 0.907
K H 0.816
H H 0.710
L B 0.725
R S 0.451
K B 0.408
S E 0.314
P E 0.302
T E 0.339
V E 0.426
F E 0.269
L E 0.186
G B 0.186
G D 0.139
I S 0.188
M B 0.174
D S 0.264
S B 0.231
L H 0.207
E H 0.284
H H 0.369
G H 0.307
N H 0.313
Y H 0.214
E B 0.168
K D 0.168
G S 0.322
N E 0.338
G G 0.233
P E 0.625
V E 0.739
V E 0.453
Y E 0.405
E E 0.394
L E 0.305
D C 0.398
E H 0.407
S S 0.161
E S 0.354
E B 0.155
F E 0.192
F E 0.302
S E 0.177
E E 0.326
F E 0.405
S E 0.392
P A 0.374
N G 0.441
Y E 0.579
L E 0.747
I E 0.730
I A 0.433
T F 0.304
N A 0.246
A B 0.230
R B 0.523
G I 0.485
D H 0.534
H H 0.397
L H 0.431
E H 0.405
N H 0.328
Y S 0.204
G G 0.131
N S 0.294
S B 0.518
L H 0.771
T H 0.936
R H 0.923
Y H 0.951
R H 0.947
S H 0.946
A H 0.944
F H 0.881
E H 0.874
K H 0.870
I H 0.818
S H 0.682
R H 0.580
N H 0.304
T B 0.359
D G 0.180
L E 0.553
V E 0.659
V E 0.467
T E 0.337
F E 0.315
A I 0.390
E S 0.387
D E 0.441
E I 0.470
L H 0.440
T H 0.368
S H 0.381
H S 0.308
L B 0.410
G E 0.391
D E 0.490
V E 0.592
T E 0.427
F E 0.286
G B 0.214
V H 0.137
K D 0.167
K B 0.142
G H 0.193
T E 0.215
Y E 0.373
T E 0.368
L A 0.406
E F 0.273
M E 0.360
R A 0.320
S E 0.461
A E 0.354
S B 0.234
R H 0.220
A D 0.209
E S 0.413
Q E 0.354
K E 0.475
A E 0.562
M E 0.571
V E 0.555
E A 0.369
K C 0.288
N H 0.181
G S 0.235
K B 0.229
R E 0.274
Y E 0.242
L B 0.209
E A 0.326
L E 0.470
K E 0.403
L B 0.336
K B 0.246
V B 0.183
P H 0.220
G H 0.237
F H 0.637
H H 0.668
N H 0.809
V H 0.891
L H 0.934
N H 0.940
A H 0.938
L H 0.964
A H 0.981
V H 0.970
I H 0.966
A H 0.978
L H 0.969
F H 0.931
D H 0.830
S H 0.701
L B 0.761
G T 0.423
Y B 0.517
D B 0.706
L H 0.571
A H 0.924
P H 0.916
V H 0.943
L H 0.907
E H 0.925
A H 0.825
L H 0.587
E H 0.668
E H 0.392
F E 0.256
R H 0.239
G S 0.302
V E 0.254
H G 0.190
R S 0.339
R E 0.265
F E 0.418
S E 0.452
I E 0.458
A E 0.347
F E 0.290
H H 0.151
D C 0.132
P A 0.162
E H 0.175
T D 0.328
N S 0.292
I E 0.430
Y E 0.587
V E 0.552
I E 0.517
D E 0.322
D E 0.297
Y I 0.255
A S 0.163
H S 0.190
T B 0.293
P H 0.459
D H 0.734
E H 0.793
I H 0.924
R H 0.955
N H 0.970
L H 0.964
L H 0.959
Q H 0.962
T H 0.957
A H 0.741
K H 0.716
E H 0.508
V S 0.206
F C 0.175
E G 0.217
N S 0.592
E B 0.446
K E 0.674
I E 0.727
V E 0.656
V E 0.479
I A 0.220
F B 0.272
Q B 0.306
P B 0.157
H S 0.185
R H 0.186
Y E 0.162
S H 0.237
R H 0.380
L H 0.438
E H 0.582
R H 0.693
E H 0.650
D H 0.543
G H 0.577
N H 0.553
F H 0.332
A H 0.360
K S 0.258
A H 0.224
L S 0.174
Q S 0.179
L S 0.274
A H 0.368
D H 0.338
E H 0.562
V H 0.771
V H 0.804
V H 0.622
T H 0.635
E H 0.778
V H 0.622
Y H 0.434
D H 0.484
A H 0.467
F H 0.263
E S 0.216
E B 0.305
K H 0.296
K H 0.362
N H 0.421
G H 0.507
I H 0.674
S H 0.621
G H 0.699
K H 0.756
M H 0.768
I H 0.732
W H 0.727
D H 0.803
S H 0.701
L H 0.521
K H 0.480
S H 0.327
L B 0.302
G S 0.178
K H 0.185
E B 0.218
A B 0.252
Y H 0.187
F H 0.225
V H 0.210
E B 0.300
K H 0.504
L H 0.761
P H 0.830
E H 0.854
L H 0.876
E H 0.910
K H 0.918
V H 0.893
I H 0.869
S H 0.889
V H 0.835
S H 0.782
E H 0.720
N H 0.621
T H 0.534
V H 0.395
F H 0.373
L H 0.403
F H 0.337
V H 0.267
G H 0.203
A H 0.305
G S 0.235
D H 0.257
I H 0.432
I H 0.390
Y H 0.753
S H 0.852
S H 0.872
R H 0.915
R H 0.924
F H 0.912
V H 0.917
E H 0.850
R H 0.642
Y H 0.670
Q S 0.559
S B 0.342
S C 0.693
K G 0.778
S S 0.790
S B 0.588
P E 0.790
S E 0.816
R E 0.750
V A 0.469
L S 0.307
G B 0.239
S S 0.131
N D 0.249
K E 0.197
END