PFRMAT SS
TARGET T0183
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-alpha-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	   11 (1 ABCDEFGHIST )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0183.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 52
METHOD
MODEL 1
M E 0.258
I B 0.209
E H 0.659
Y H 0.855
R H 0.901
I H 0.932
E H 0.935
E H 0.931
A H 0.902
V H 0.843
A H 0.793
K H 0.607
Y H 0.451
R H 0.543
E H 0.462
F H 0.339
Y E 0.230
E E 0.264
F E 0.178
K B 0.299
P H 0.259
V H 0.631
R H 0.680
E H 0.736
S H 0.817
A H 0.776
G H 0.763
I H 0.868
E H 0.870
D H 0.838
V H 0.747
K H 0.781
S H 0.804
A H 0.584
I H 0.415
E H 0.368
H I 0.439
T H 0.376
N S 0.532
L S 0.210
K B 0.439
P I 0.373
F S 0.669
A B 0.326
T B 0.632
P H 0.785
D H 0.933
D H 0.905
I H 0.941
K H 0.952
K H 0.973
L H 0.939
C H 0.884
L H 0.924
E H 0.894
A H 0.806
R H 0.673
E H 0.568
N B 0.494
R S 0.273
F E 0.323
H E 0.444
G E 0.610
V E 0.707
C E 0.520
V B 0.313
N B 0.354
P I 0.380
C H 0.535
Y H 0.409
V H 0.744
K H 0.895
L H 0.934
A H 0.878
R H 0.825
E H 0.868
E H 0.624
L H 0.379
E H 0.552
G S 0.548
T B 0.629
D S 0.322
V E 0.529
K E 0.679
V E 0.573
V E 0.486
T E 0.527
V E 0.259
V G 0.296
G S 0.171
F C 0.246
P C 0.206
L G 0.153
G S 0.285
A S 0.178
N B 0.236
E H 0.316
T H 0.553
R H 0.693
T H 0.757
K H 0.881
A H 0.941
H H 0.973
E H 0.977
A H 0.965
I H 0.961
F H 0.976
A H 0.973
V H 0.840
E H 0.850
S B 0.462
G T 0.573
A E 0.395
D I 0.269
E E 0.333
I E 0.550
D T 0.192
M E 0.503
V E 0.484
I E 0.437
N E 0.409
V I 0.570
G H 0.447
M H 0.471
L H 0.542
K H 0.277
A B 0.328
K S 0.385
E H 0.227
W H 0.616
E H 0.856
Y H 0.898
V H 0.916
Y H 0.934
E H 0.960
D H 0.964
I H 0.951
R H 0.962
S H 0.971
V H 0.904
V H 0.765
E H 0.811
S H 0.462
V B 0.252
K F 0.286
G S 0.616
K B 0.546
V E 0.503
V E 0.504
K E 0.537
V E 0.549
I E 0.490
I E 0.423
E A 0.246
T B 0.189
C B 0.214
Y E 0.220
L B 0.166
D B 0.356
T H 0.540
E H 0.733
E H 0.849
K H 0.893
I H 0.919
A H 0.955
A H 0.921
C H 0.934
V H 0.957
I H 0.963
S H 0.940
K H 0.841
L H 0.729
A B 0.620
G T 0.570
A E 0.448
H G 0.245
F A 0.456
V E 0.579
K E 0.324
T B 0.305
S G 0.136
T B 0.277
G D 0.308
F B 0.222
G C 0.337
T B 0.183
G G 0.236
G S 0.572
A B 0.393
T B 0.658
A H 0.705
E H 0.917
D H 0.931
V H 0.945
H H 0.965
L H 0.964
M H 0.950
K H 0.884
W H 0.870
I H 0.723
V H 0.391
G H 0.397
D H 0.373
E G 0.378
M B 0.492
G E 0.246
V E 0.511
K E 0.347
A E 0.250
S G 0.204
G S 0.350
G S 0.165
I E 0.232
R H 0.330
T B 0.531
F H 0.802
E H 0.937
D H 0.901
A H 0.913
V H 0.923
K H 0.944
M H 0.908
I H 0.853
M H 0.863
Y H 0.789
G H 0.612
A H 0.622
D H 0.519
R H 0.313
I H 0.215
G H 0.189
T H 0.254
S H 0.433
S H 0.562
G H 0.707
V H 0.830
K H 0.888
I H 0.903
V H 0.769
Q H 0.695
G H 0.604
G H 0.622
E H 0.565
E H 0.462
R H 0.271
Y B 0.193
G S 0.179
G C 0.205
END