echo "InfilePrefix decoys/"> read-decoys.script ls decoys/*T0182*pdb* \ | sed 's;decoys/;ReadConformPDB ;' \ >> read-decoys.script echo "InfilePrefix" >> read-decoys.script ls robetta[1-5]*pdb* \ | sed 's;rob;ReadConformPDB rob;' \ >> read-decoys.script ls: robetta[1-5]*pdb*: No such file or directory chgrp protein read-decoys.script chmod g+w read-decoys.script /cse/faculty/karplus/undertaker/undertaker < /projects/compbio/experiments/casp5/scripts-human/compare-real.under # command:# SetRealCost created real_cost = # ( 1 * rmsd-ca + 1 * rmsd ) # command:# Prefix for input files set to # command:# reading script from file define-score.script # Prefix for input files set to /projects/kestrel/users/karplus/burial/undertaker/atoms-inputs/ # reading monomeric-50pc.atoms # After reading monomeric-50pc.atoms have 448 chains in training database # 111547 residues have no bad marker # 670 residues lack atoms needed to compute omega # 322 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 6 # HAS_OXT 325 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 523 # HAS_UNKNOWN_ATOMS 2 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 208 # NON_PLANAR_PEPTIDE 28 # Note: may sum to more than number of residues, # because one residue may have multiple problems # Reading rotamer library from monomeric-50pc.rot # Prefix for input files set to /projects/kestrel/users/karplus/burial/undertaker/spots/ # ReadAtomType pdb-name.types Read AtomType pdb-name with 37 types. # ReadClashTable pdb-atom-name.clash # Read ClashTable pdb-atom-name Reading spots from monomeric-50pc-dry-5.spot. Read prototypes from /projects/kestrel/users/karplus/burial/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-5.hist # created burial cost function dry5 with radius 5 Reading spots from monomeric-50pc-wet-6.5.spot. Read prototypes from /projects/kestrel/users/karplus/burial/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-wet-6.5.hist # created burial cost function wet6.5 with radius 6.5 Reading spots from monomeric-50pc-dry-6.5.spot. Read prototypes from /projects/kestrel/users/karplus/burial/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-6.5.hist # created burial cost function dry6.5 with radius 6.5 Reading spots from monomeric-50pc-generic-6.5.spot. Read prototypes from /projects/kestrel/users/karplus/burial/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-generic-6.5.hist # created burial cost function gen6.5 with radius 6.5 Reading spots from monomeric-50pc-dry-8.spot. Read prototypes from /projects/kestrel/users/karplus/burial/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-8.hist # created burial cost function dry8 with radius 8 Reading spots from monomeric-50pc-dry-10.spot. Read prototypes from /projects/kestrel/users/karplus/burial/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-10.hist # created burial cost function dry10 with radius 10 Reading spots from monomeric-50pc-dry-12.spot. Read prototypes from /projects/kestrel/users/karplus/burial/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-12.hist # created burial cost function dry12 with radius 12 # reading histogram from monomeric-smoothed-alpha.hist # created alpha cost function alpha with offset 0 and 360 bins # reading histogram from monomeric-smoothed-alpha-1.hist # created alpha cost function alpha_prev with offset -1 and 360 bins CPU_time= 10440 msec, elapsed time= 10662 msec) # Prefix for input files set to # Reading target chain from PDB file T0182.blank.pdb Read PDB file T0182.blank.pdb as target. Have 250 residues and 1932 atoms. # No conformations to remove in PopConform # Prefix for input files set to /projects/compbio/lib/alphabet/ # Read 3 alphabets from alpha.alphabet # Prefix for input files set to # reading predictions from T0182.t2k.alpha.rdb # created predicted alpha cost function pred_alpha2 with 360 bins # SetCost created cost = # ( 0.2 * gen6.5(6.5) + 0.8 * wet6.5(6.5, /log(length)) + 3 * dry5(5) + 11 * dry6.5(6.5) + 5 * dry8(8) + 1 * dry12(12) + 1 * phobic_fit + 0.2 * sidechain + 1.5 * clashes + -0.2 * sidechain_clashes + 0.5 * backbone_clashes + 25 * break + 1 * pred_alpha2 + 0.05 * constraints + 1 * contact_order ) # command:# Will now start reporting costs to score-decoys-unsorted.rdb # command:CPU_time= 17620 msec, elapsed time= 17987 msec) # command:# Prefix for input files set to # command:# reading script from file read-decoys.script # Prefix for input files set to decoys/ # Reading conformation from PDB file T0182.try1-al10.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0182.try1-al12.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0182.try1-al2.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0182.try1-al4.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0182.try1-al6.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0182.try1-al8.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0182.try1-opt-scwrl.pdb.gz # Reading conformation from PDB file T0182.try1-opt.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0182.try1.0.60.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0182.try1.1.60.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0182.try1.10.60.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0182.try1.11.60.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0182.try1.12.60.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0182.try1.13.60.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0182.try1.14.60.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0182.try1.15.60.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0182.try1.16.60.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0182.try1.17.60.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0182.try1.18.60.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0182.try1.19.60.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0182.try1.2.60.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0182.try1.20.60.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0182.try1.3.60.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0182.try1.4.60.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0182.try1.5.60.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0182.try1.6.60.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0182.try1.7.60.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0182.try1.8.60.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0182.try1.9.60.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0182.try2.0.120.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0182.try2.1.120.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0182.try3.0.120.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0182.try3.1.120.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0182.try4-opt-scwrl.pdb.gz # Reading conformation from PDB file T0182.try4-opt.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0182.try4.0.120.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0182.try4.1.120.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0182.try4.10.120.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0182.try4.2.120.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0182.try4.3.120.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0182.try4.4.120.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0182.try4.5.120.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0182.try4.6.120.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0182.try4.7.120.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0182.try4.8.120.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0182.try4.9.120.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0182.try5-try2-0.0.120.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0182.try5-try2-0.1.120.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0182.try6-opt-scwrl.pdb.gz # Reading conformation from PDB file T0182.try6-opt.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0182.try6-try4-3.0.150.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0182.try6-try4-3.1.150.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0182.try6-try4-3.3.150.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0182.try6-try4-3.4.150.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0182.try6-try4-9.2.150.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Prefix for input files set to # command:# Prefix for input files set to # command:# Reading conformation from PDB file real.pdb Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms Bad short name: OH2 for alphabet: pdb_atoms # command:# Saving current conformation as real # command:CPU_time= 25030 msec, elapsed time= 26202.4 msec) # command:# CostConform Not enough atoms (only 0) to locate spot for (T0182)G250 Not enough atoms (only 0) to locate spot for (T0182)G250 Not enough atoms (only 0) to locate spot for (T0182)G250 Not enough atoms (only 0) to locate spot for (T0182)G250 Not enough atoms (only 0) to locate spot for (T0182)G250 Not enough atoms (only 0) to locate spot for (T0182)G250 real.pdb costs 70.6977 real_cost = 0 T0182.try6-try4-9.2.150.pdb.gz costs 66.8414 real_cost = 3.77246 T0182.try6-try4-3.4.150.pdb.gz costs 65.7207 real_cost = 3.76569 T0182.try6-try4-3.3.150.pdb.gz costs 66.1118 real_cost = 3.76886 T0182.try6-try4-3.1.150.pdb.gz costs 66.159 real_cost = 3.75098 T0182.try6-try4-3.0.150.pdb.gz costs 66.0736 real_cost = 3.81368 T0182.try6-opt.pdb.gz costs 65.7206 real_cost = 3.7657 T0182.try6-opt-scwrl.pdb.gz costs 67.8717 real_cost = 3.72513 T0182.try5-try2-0.1.120.pdb.gz costs 68.5751 real_cost = 3.82687 T0182.try5-try2-0.0.120.pdb.gz costs 68.6175 real_cost = 3.91319 T0182.try4.9.120.pdb.gz costs 67.3739 real_cost = 3.77355 T0182.try4.8.120.pdb.gz costs 67.3375 real_cost = 3.75419 T0182.try4.7.120.pdb.gz costs 66.9843 real_cost = 3.61073 T0182.try4.6.120.pdb.gz costs 67.5454 real_cost = 3.81915 T0182.try4.5.120.pdb.gz costs 67.5098 real_cost = 3.6864 T0182.try4.4.120.pdb.gz costs 67.4096 real_cost = 3.92244 T0182.try4.3.120.pdb.gz costs 66.9179 real_cost = 3.77339 T0182.try4.2.120.pdb.gz costs 67.3864 real_cost = 3.77423 T0182.try4.10.120.pdb.gz costs 65.9267 real_cost = 3.80634 T0182.try4.1.120.pdb.gz costs 67.5453 real_cost = 3.75215 T0182.try4.0.120.pdb.gz costs 67.4917 real_cost = 3.74178 T0182.try4-opt.pdb.gz costs 65.9312 real_cost = 3.80636 T0182.try4-opt-scwrl.pdb.gz costs 67.5913 real_cost = 3.84013 T0182.try3.1.120.pdb.gz costs 68.1218 real_cost = 3.73382 T0182.try3.0.120.pdb.gz costs 68.3879 real_cost = 3.84704 T0182.try2.1.120.pdb.gz costs 68.7281 real_cost = 3.7033 T0182.try2.0.120.pdb.gz costs 68.9595 real_cost = 3.84446 T0182.try1.9.60.pdb.gz costs 70.6093 real_cost = 3.36053 T0182.try1.8.60.pdb.gz costs 71.1904 real_cost = 3.58962 T0182.try1.7.60.pdb.gz costs 70.9528 real_cost = 4.32118 T0182.try1.6.60.pdb.gz costs 71.4854 real_cost = 3.76935 T0182.try1.5.60.pdb.gz costs 70.9726 real_cost = 3.83676 T0182.try1.4.60.pdb.gz costs 70.6712 real_cost = 3.40016 T0182.try1.3.60.pdb.gz costs 69.8823 real_cost = 4.01401 T0182.try1.20.60.pdb.gz costs 69.3169 real_cost = 4.36437 T0182.try1.2.60.pdb.gz costs 70.7362 real_cost = 3.63938 T0182.try1.19.60.pdb.gz costs 71.1538 real_cost = 3.74269 T0182.try1.18.60.pdb.gz costs 71.6954 real_cost = 3.62409 T0182.try1.17.60.pdb.gz costs 70.6871 real_cost = 4.43025 T0182.try1.16.60.pdb.gz costs 71.4187 real_cost = 3.81814 T0182.try1.15.60.pdb.gz costs 71.5273 real_cost = 3.36058 T0182.try1.14.60.pdb.gz costs 70.6523 real_cost = 3.56589 T0182.try1.13.60.pdb.gz costs 70.3151 real_cost = 3.71793 T0182.try1.12.60.pdb.gz costs 71.2534 real_cost = 3.65733 T0182.try1.11.60.pdb.gz costs 71.5006 real_cost = 3.71566 T0182.try1.10.60.pdb.gz costs 70.8658 real_cost = 3.30176 T0182.try1.1.60.pdb.gz costs 71.0928 real_cost = 5.03666 T0182.try1.0.60.pdb.gz costs 71.0054 real_cost = 3.6183 T0182.try1-opt.pdb.gz costs 69.3169 real_cost = 4.36437 T0182.try1-opt-scwrl.pdb.gz costs 68.5949 real_cost = 4.3456 T0182.try1-al8.pdb.gz costs 73.167 real_cost = 3.19622 T0182.try1-al6.pdb.gz costs 73.167 real_cost = 3.19622 T0182.try1-al4.pdb.gz costs 73.167 real_cost = 3.19622 T0182.try1-al2.pdb.gz costs 74.5444 real_cost = 3.22367 T0182.try1-al12.pdb.gz costs 73.167 real_cost = 3.19622 T0182.try1-al10.pdb.gz costs 73.167 real_cost = 3.19622 # command:# command:CPU_time= 39510 msec, elapsed time= 40891.7 msec) # command:/projects/compbio/bin/sorttbl rmsd cost < score-decoys-unsorted.rdb > score-real-decoys.rdb rm score-decoys-unsorted.rdb chgrp protein score-real-decoys.rdb chmod g+w score-real-decoys.rdb make: *** No rule to make target `score-real_1-decoys.rdb'. make: *** No rule to make target `score-real_2-decoys.rdb'. make: *** No rule to make target `score-real_3-decoys.rdb'. make: *** No rule to make target `score-real_4-decoys.rdb'.