PFRMAT SS
TARGET T0182
AUTHOR 4069-6308-1312 
METHOD This file is the result of combining several RDB files, specifically
METHOD T0182.t2k.dssp-ebghstl.rdb  (weight 1.53986)
METHOD T0182.t2k.stride-ebghtl.rdb  (weight 1.24869)
METHOD T0182.t2k.str.rdb  (weight 1.53983)
METHOD T0182.t2k.alpha.rdb  (weight 0.659012)
METHOD These files were combined by translating their predictions into EHL
METHOD predictions with tables generated by compare-real, and then combining
METHOD those predictions with weights proportional to their mutual information
METHOD with the EHL alphabet.  The comments from the individual files follow.
METHOD
METHOD Comments from T0182.t2k.dssp-ebghstl.rdb
METHOD ============================================
METHOD TARGET T0182
METHOD Using neural net t2k-5740-IDaaHr-5-15-7-15-9-15-13-ebghstl-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	    7 (1 EBGHSTL )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0182.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 300
METHOD
METHOD ============================================
METHOD Comments from T0182.t2k.stride-ebghtl.rdb
METHOD ============================================
METHOD TARGET T0182
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-ebghtl-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	    6 (1 EBGHTL )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0182.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 300
METHOD
METHOD ============================================
METHOD Comments from T0182.t2k.str.rdb
METHOD ============================================
METHOD TARGET T0182
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-str-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	   13 (1 str )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0182.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 300
METHOD
METHOD ============================================
METHOD Comments from T0182.t2k.alpha.rdb
METHOD ============================================
METHOD TARGET T0182
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-alpha-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	   11 (1 ABCDEFGHIST )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0182.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 300
METHOD
METHOD ============================================
MODEL 1
M C 0.89
I C 0.62
R C 0.56
I C 0.73
K C 0.87
T C 0.93
P H 0.92
S H 0.95
E H 0.95
I H 0.96
E H 0.96
K H 0.96
M H 0.96
K H 0.96
K H 0.96
A H 0.95
G H 0.96
K H 0.96
A H 0.96
V H 0.96
A H 0.96
V H 0.96
A H 0.96
L H 0.96
R H 0.95
E H 0.94
V H 0.93
R H 0.92
K H 0.86
V H 0.76
I H 0.48
V C 0.77
P C 0.87
G C 0.94
K C 0.83
T C 0.79
A H 0.93
W H 0.95
D H 0.96
V H 0.96
E H 0.96
T H 0.96
L H 0.96
V H 0.96
L H 0.95
E H 0.95
I H 0.95
F H 0.95
K H 0.94
K H 0.88
L H 0.52
R C 0.82
V C 0.83
K C 0.73
P C 0.68
A C 0.67
F C 0.66
K C 0.67
G C 0.72
Y C 0.74
G C 0.74
G C 0.74
Y C 0.73
K C 0.69
Y C 0.54
A E 0.60
T E 0.68
C E 0.64
V C 0.51
S C 0.72
V C 0.67
N C 0.68
E C 0.61
E C 0.54
V C 0.52
V C 0.55
H C 0.65
G C 0.73
L C 0.78
P C 0.82
L C 0.83
K C 0.84
E C 0.77
K C 0.61
V E 0.58
F C 0.56
K C 0.79
E C 0.88
G C 0.93
D C 0.73
I E 0.82
V E 0.90
S E 0.92
V E 0.89
D E 0.76
V E 0.66
G E 0.56
A E 0.68
V E 0.70
Y E 0.61
Q C 0.80
G C 0.82
L E 0.48
Y E 0.62
G E 0.56
D E 0.49
A E 0.56
A E 0.63
V E 0.67
T E 0.73
Y E 0.72
I E 0.62
V C 0.64
G C 0.84
E C 0.89
T C 0.91
D C 0.93
E H 0.91
R H 0.94
G H 0.95
K H 0.96
E H 0.96
L H 0.96
V H 0.96
R H 0.96
V H 0.96
T H 0.96
R H 0.96
E H 0.96
V H 0.96
L H 0.96
E H 0.95
K H 0.95
A H 0.95
I H 0.93
K H 0.86
M H 0.69
I C 0.54
K C 0.83
P C 0.85
G C 0.92
I C 0.80
R C 0.73
L H 0.70
G H 0.79
D H 0.83
V H 0.93
S H 0.95
H H 0.96
C H 0.96
I H 0.96
Q H 0.96
E H 0.96
T H 0.96
V H 0.95
E H 0.94
S H 0.87
V C 0.52
G C 0.92
F C 0.90
N C 0.79
V C 0.62
I C 0.58
R C 0.56
D C 0.63
Y C 0.61
V C 0.61
G C 0.62
H C 0.62
G C 0.61
V C 0.59
G C 0.63
R C 0.51
E E 0.48
L C 0.44
H C 0.60
E C 0.72
D C 0.78
P C 0.75
Q C 0.63
I C 0.53
P C 0.55
N C 0.58
Y C 0.63
G C 0.73
T C 0.81
P C 0.79
G C 0.82
T C 0.81
G C 0.73
V C 0.63
V E 0.56
L E 0.54
R C 0.73
K C 0.89
G C 0.92
M C 0.60
T E 0.84
L E 0.89
A E 0.88
I E 0.83
E E 0.66
P E 0.57
M E 0.63
V E 0.67
S E 0.62
E C 0.54
G C 0.74
D C 0.77
W C 0.74
R C 0.57
V E 0.55
V E 0.59
V E 0.55
K C 0.64
E C 0.75
D C 0.82
G C 0.75
W C 0.53
T E 0.68
A E 0.76
V E 0.74
T E 0.60
V C 0.57
D C 0.80
G C 0.83
S C 0.57
R E 0.70
C E 0.82
A E 0.90
H E 0.91
F E 0.90
E E 0.84
H E 0.79
T E 0.86
I E 0.92
L E 0.92
I E 0.89
T E 0.60
E C 0.82
N C 0.91
G C 0.84
A C 0.54
E E 0.77
I E 0.80
L E 0.61
T C 0.59
K C 0.75
E C 0.87
G C 0.92
END