PFRMAT SS TARGET T0182 METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-alpha-seeded.net METHOD This is a 4-layer network, with METHOD window units METHOD 5 15 METHOD 7 15 METHOD 9 15 METHOD 13 11 (1 ABCDEFGHIST ) METHOD The input amino acid frequencies were determined from METHOD alignment T0182.t2k-thin90.a2m.gz METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1) METHOD Counts were regularized to probabilities using METHOD /projects/compbio/lib/recode3.20comp METHOD Total sequence weight for alignment was 300 METHOD MODEL 1 M E 0.337 I E 0.392 R E 0.418 I B 0.344 K E 0.230 T B 0.548 P H 0.730 S H 0.923 E H 0.915 I H 0.968 E H 0.951 K H 0.942 M H 0.945 K H 0.942 K H 0.954 A H 0.922 G H 0.944 K H 0.956 A H 0.958 V H 0.945 A H 0.955 V H 0.960 A H 0.942 L H 0.940 R H 0.947 E H 0.944 V H 0.870 R H 0.800 K H 0.756 V H 0.465 I S 0.188 V C 0.342 P G 0.563 G S 0.777 K B 0.517 T B 0.529 A H 0.783 W H 0.933 D H 0.944 V H 0.947 E H 0.956 T H 0.963 L H 0.965 V H 0.940 L H 0.951 E H 0.959 I H 0.955 F H 0.927 K H 0.830 K H 0.732 L B 0.528 R S 0.345 V B 0.198 K B 0.317 P B 0.205 A H 0.172 F H 0.190 K H 0.169 G S 0.247 Y B 0.182 G B 0.155 G S 0.212 Y C 0.239 K B 0.276 Y E 0.270 A E 0.281 T E 0.294 C E 0.328 V S 0.281 S C 0.486 V H 0.412 N H 0.210 E S 0.195 E H 0.206 V E 0.238 V E 0.305 H E 0.165 G S 0.199 L B 0.266 P B 0.211 L H 0.258 K S 0.217 E S 0.382 K B 0.501 V B 0.430 F B 0.309 K C 0.679 E G 0.529 G S 0.792 D B 0.596 I A 0.474 V E 0.638 S E 0.585 V E 0.471 D A 0.385 V E 0.232 G E 0.221 A E 0.361 V A 0.326 Y A 0.173 Q D 0.447 G S 0.287 L E 0.280 Y E 0.295 G E 0.303 D E 0.264 A E 0.275 A E 0.325 V E 0.466 T E 0.403 Y B 0.435 I E 0.375 V S 0.161 G D 0.401 E C 0.373 T B 0.446 D B 0.660 E H 0.708 R H 0.852 G H 0.885 K H 0.945 E H 0.933 L H 0.931 V H 0.959 R H 0.960 V H 0.969 T H 0.954 R H 0.952 E H 0.951 V H 0.940 L H 0.932 E H 0.911 K H 0.903 A H 0.856 I H 0.714 K H 0.665 M S 0.446 I B 0.301 K C 0.589 P G 0.532 G S 0.859 I B 0.457 R B 0.283 L H 0.318 G H 0.631 D H 0.616 V H 0.823 S H 0.917 H H 0.942 C H 0.969 I H 0.935 Q H 0.949 E H 0.966 T H 0.969 V H 0.929 E H 0.845 S H 0.697 V B 0.602 G T 0.445 F B 0.384 N B 0.208 V A 0.252 I E 0.307 R E 0.196 D E 0.201 Y S 0.216 V B 0.198 G D 0.171 H E 0.163 G E 0.142 V E 0.178 G S 0.182 R E 0.244 E E 0.270 L E 0.202 H E 0.171 E S 0.148 D B 0.213 P E 0.173 Q E 0.227 I B 0.270 P E 0.282 N E 0.195 Y E 0.205 G B 0.166 T C 0.233 P H 0.267 G S 0.309 T B 0.178 G S 0.291 V B 0.552 V B 0.395 L B 0.351 R C 0.706 K G 0.570 G S 0.729 M B 0.475 T E 0.477 L E 0.504 A E 0.521 I E 0.310 E E 0.283 P E 0.215 M E 0.256 V E 0.317 S E 0.304 E B 0.253 G C 0.229 D H 0.182 W S 0.407 R B 0.280 V E 0.313 V E 0.262 V B 0.255 K C 0.255 E H 0.315 D B 0.252 G S 0.376 W E 0.260 T B 0.324 A E 0.340 V E 0.361 T B 0.243 V C 0.203 D D 0.216 G S 0.468 S B 0.248 R E 0.266 C E 0.399 A E 0.514 H E 0.560 F E 0.450 E E 0.353 H E 0.430 T E 0.683 I E 0.718 L E 0.575 I T 0.251 T C 0.797 E H 0.609 N C 0.321 G D 0.329 A B 0.385 E E 0.418 I E 0.431 L A 0.175 T B 0.223 K S 0.339 E B 0.335 G B 0.269 END