PFRMAT SS
TARGET T0182
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-alpha-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	   11 (1 ABCDEFGHIST )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0182.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 300
METHOD
MODEL 1
M E 0.337
I E 0.392
R E 0.418
I B 0.344
K E 0.230
T B 0.548
P H 0.730
S H 0.923
E H 0.915
I H 0.968
E H 0.951
K H 0.942
M H 0.945
K H 0.942
K H 0.954
A H 0.922
G H 0.944
K H 0.956
A H 0.958
V H 0.945
A H 0.955
V H 0.960
A H 0.942
L H 0.940
R H 0.947
E H 0.944
V H 0.870
R H 0.800
K H 0.756
V H 0.465
I S 0.188
V C 0.342
P G 0.563
G S 0.777
K B 0.517
T B 0.529
A H 0.783
W H 0.933
D H 0.944
V H 0.947
E H 0.956
T H 0.963
L H 0.965
V H 0.940
L H 0.951
E H 0.959
I H 0.955
F H 0.927
K H 0.830
K H 0.732
L B 0.528
R S 0.345
V B 0.198
K B 0.317
P B 0.205
A H 0.172
F H 0.190
K H 0.169
G S 0.247
Y B 0.182
G B 0.155
G S 0.212
Y C 0.239
K B 0.276
Y E 0.270
A E 0.281
T E 0.294
C E 0.328
V S 0.281
S C 0.486
V H 0.412
N H 0.210
E S 0.195
E H 0.206
V E 0.238
V E 0.305
H E 0.165
G S 0.199
L B 0.266
P B 0.211
L H 0.258
K S 0.217
E S 0.382
K B 0.501
V B 0.430
F B 0.309
K C 0.679
E G 0.529
G S 0.792
D B 0.596
I A 0.474
V E 0.638
S E 0.585
V E 0.471
D A 0.385
V E 0.232
G E 0.221
A E 0.361
V A 0.326
Y A 0.173
Q D 0.447
G S 0.287
L E 0.280
Y E 0.295
G E 0.303
D E 0.264
A E 0.275
A E 0.325
V E 0.466
T E 0.403
Y B 0.435
I E 0.375
V S 0.161
G D 0.401
E C 0.373
T B 0.446
D B 0.660
E H 0.708
R H 0.852
G H 0.885
K H 0.945
E H 0.933
L H 0.931
V H 0.959
R H 0.960
V H 0.969
T H 0.954
R H 0.952
E H 0.951
V H 0.940
L H 0.932
E H 0.911
K H 0.903
A H 0.856
I H 0.714
K H 0.665
M S 0.446
I B 0.301
K C 0.589
P G 0.532
G S 0.859
I B 0.457
R B 0.283
L H 0.318
G H 0.631
D H 0.616
V H 0.823
S H 0.917
H H 0.942
C H 0.969
I H 0.935
Q H 0.949
E H 0.966
T H 0.969
V H 0.929
E H 0.845
S H 0.697
V B 0.602
G T 0.445
F B 0.384
N B 0.208
V A 0.252
I E 0.307
R E 0.196
D E 0.201
Y S 0.216
V B 0.198
G D 0.171
H E 0.163
G E 0.142
V E 0.178
G S 0.182
R E 0.244
E E 0.270
L E 0.202
H E 0.171
E S 0.148
D B 0.213
P E 0.173
Q E 0.227
I B 0.270
P E 0.282
N E 0.195
Y E 0.205
G B 0.166
T C 0.233
P H 0.267
G S 0.309
T B 0.178
G S 0.291
V B 0.552
V B 0.395
L B 0.351
R C 0.706
K G 0.570
G S 0.729
M B 0.475
T E 0.477
L E 0.504
A E 0.521
I E 0.310
E E 0.283
P E 0.215
M E 0.256
V E 0.317
S E 0.304
E B 0.253
G C 0.229
D H 0.182
W S 0.407
R B 0.280
V E 0.313
V E 0.262
V B 0.255
K C 0.255
E H 0.315
D B 0.252
G S 0.376
W E 0.260
T B 0.324
A E 0.340
V E 0.361
T B 0.243
V C 0.203
D D 0.216
G S 0.468
S B 0.248
R E 0.266
C E 0.399
A E 0.514
H E 0.560
F E 0.450
E E 0.353
H E 0.430
T E 0.683
I E 0.718
L E 0.575
I T 0.251
T C 0.797
E H 0.609
N C 0.321
G D 0.329
A B 0.385
E E 0.418
I E 0.431
L A 0.175
T B 0.223
K S 0.339
E B 0.335
G B 0.269
END