# List of top-scoring protein chains for t2k-100-30-dssp_ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1c24A 263 3.62e-62 1c24A d.127.1.1 41148 2matA 264 4.37e-62 1c24A d.127.1.1 41146 1mat 264 1.11e-61 1c24A d.127.1.1 41152 1az9 457 8.29e-53 1az9 c.55.2.1 33547 d.127.1.1 41164 1a16 440 8.80e-53 1az9 c.55.2.1 33548 d.127.1.1 41165 1bn5 478 2.56e-46 1bn5 a.4.5.25 16224 d.127.1.1 41161 1b6a 478 2.66e-46 1bn5 a.4.5.25 16223 d.127.1.1 41160 1xgsA 295 4.01e-46 1bn5 a.4.5.25 16216 d.127.1.1 41153 1chmA 401 2.99e-39 1chmA c.55.2.1 33545 d.127.1.1 41142 1e2tA 284 2.66e-01 1e2tA d.3.1.5 37121 1gdeA 389 2.85e-01 c.67.1.1 60456 1gmlA 178 6.91e-01 1gof 639 1.27e+00 1gof b.1.1.5 21807 b.18.1.1 23709 b.69.1.1 27631 1bncA 449 1.50e+00 1bncA b.84.2.1 28236 c.30.1.1 31643 d.142.1.2 41488 1f60A 458 2.19e+00 1efcA b.43.3.1 25705 b.44.1.1 25745 c.37.1.8 32140 1ig8A 486 2.77e+00 2yhx c.55.1.3 64746 c.55.1.3 64747 1io1A 398 2.81e+00 1io1A e.32.1.1 62611 1a3h 300 3.24e+00 7a3hA c.1.8.3 28819 7a3hA 303 3.27e+00 7a3hA c.1.8.3 28817 1enfA 212 3.28e+00 3seb b.40.2.2 25198 d.15.6.1 37787 1je5A 206 3.36e+00 1je5A b.40.4.7 62909 1fgs 428 3.47e+00 1fgs c.59.1.2 33959 c.72.2.2 34962 1dupA 152 3.49e+00 1dupA b.85.4.1 28351 1euwA 152 3.49e+00 1dupA b.85.4.1 28349 1qmuA 380 3.59e+00 1qmuA b.3.2.1 22534 c.56.5.1 33827 2jhbA 143 3.88e+00 2jhbA b.54.1.1 26950 1qexA 288 3.98e+00 1qexA b.32.1.1 24425 1gpeA 587 4.11e+00 1gpeA c.3.1.2 30387 d.16.1.4 37951 1a64A 97 4.22e+00 1cdcA b.1.1.1 19750 1i1kA 309 4.60e+00 1daaA e.17.1.1 61533 1k3iA 656 5.02e+00 b.1.1.5 68113 b.18.1.1 68114 b.69.1.1 68115 1imdA 277 5.06e+00 1imbA e.7.1.1 42968 1bc8C 93 5.36e+00 1awcA a.4.5.21 16168 1ihfB 94 5.64e+00 1huuA a.55.1.1 17894 1dar 691 6.08e+00 1dar b.43.3.1 25707 c.37.1.8 32142 d.14.1.1 37547 d.58.11.1 39300 1derA 547 6.13e+00 1derA a.129.1.1 19459 c.8.5.1 30788 d.56.1.1 38907 1bf5A 545 6.19e+00 1bg1A a.47.1.1 17766 b.2.5.1 22460 d.93.1.1 40526 1h9dB 134 6.64e+00 2jhbA b.54.1.1 60822 1rlr 761 6.87e+00 1rlr a.98.1.1 18753 c.7.1.2 30679 1svr 114 7.51e+00 1svy d.109.1.1 40833 1goh 639 8.77e+00 1gof b.1.1.5 21809 b.18.1.1 23711 b.69.1.1 27633 1a3aA 148 8.86e+00 1a3aA d.112.1.1 40917 1ekfA 365 9.57e+00 1ekfA e.17.1.1 59445 2hhmA 276 9.68e+00 1imbA e.7.1.1 42955 1imbA 277 9.72e+00 1imbA e.7.1.1 42957 1oacA 727 9.85e+00 1oacA b.30.2.1 24390 d.17.2.1 38007 d.17.2.1 38008 d.82.1.1 40003 1cdcB 99 9.90e+00 1cdcA b.1.1.1 19747 1tf4A 605 1.01e+01 1tf4A a.102.1.2 18827 b.2.2.2 22393 1bncB 449 1.01e+01 1bncA b.84.2.1 28237 c.30.1.1 31644 d.142.1.2 41489 1spuB 727 1.02e+01 1oacA b.30.2.1 24399 d.17.2.1 38025 d.17.2.1 38026 d.82.1.1 40012 1jbwA 428 1.05e+01 c.59.1.2 62860 c.72.2.2 62861 1svq 114 1.09e+01 1svy d.109.1.1 40832 1abrA 251 1.09e+01 1mrj d.165.1.1 42196 1brmA 367 1.10e+01 1brmA c.2.1.3 30030 d.81.1.1 39945 1ayyA 151 1.13e+01 1apyA d.153.1.5 42016 1gx3A 284 1.13e+01 1dlhB 188 1.16e+01 1iakB b.1.1.2 21598 d.19.1.1 38172 1cfyA 143 1.16e+01 1cof d.109.1.2 40858 1hbyA 123 1.16e+01 7rsa d.5.1.1 60936 1d6zA 727 1.16e+01 1oacA b.30.2.1 24394 d.17.2.1 38015 d.17.2.1 38016 d.82.1.1 40007 1befA 181 1.18e+01 1befA b.47.1.3 26419 1cdcA 99 1.22e+01 1cdcA b.1.1.1 19746 1jenA 267 1.22e+01 1jenA 1a4yB 123 1.35e+01 7rsa d.5.1.1 37296 1avwB 171 1.35e+01 1wba b.42.4.1 25599 1a3aC 148 1.36e+01 1a3aA d.112.1.1 40919 1mgn 154 1.39e+01 1a6m a.1.1.2 15097 1qltA 560 1.41e+01 1qltA d.58.32.1 39457 d.145.1.1 41720 2ezl 99 1.45e+01 2ezk a.4.1.2 16026 1a3gA 308 1.45e+01 1daaA e.17.1.1 43286 1vapA 123 1.49e+01 1poa a.133.1.2 19548 1kcw 1046 1.53e+01 1kcw b.6.1.3 23151 b.6.1.3 23152 b.6.1.3 23153 b.6.1.3 23154 b.6.1.3 23155 b.6.1.3 23156 1seiA 130 1.54e+01 1seiA d.140.1.1 41463 1j8fA 323 1.56e+01 1j8fA c.31.1.5 62738 1f5vA 240 1.57e+01 1bkjA d.90.1.1 40255 1ea7A 310 1.58e+01 1g4wR 383 1.59e+01 1g4uS a.24.11.1 16644 c.45.1.2 32692 1epwA 1290 1.60e+01 b.29.1.6 24269 b.42.4.2 25614 d.92.1.7 40305 h.4.2.1 45785 1i6pA 220 1.65e+01 1ddzA c.53.2.1 61848 1amm 174 1.65e+01 1amm b.11.1.1 23587 b.11.1.1 23588 4gcr 174 1.65e+01 1amm b.11.1.1 23589 b.11.1.1 23590 1tie 172 1.66e+01 1wba b.42.4.1 25592 1ae7 119 1.74e+01 1poa a.133.1.2 19553 1cskA 71 1.78e+01 1ckaA b.34.2.1 24513 1rdr 461 1.81e+01 1rdr e.8.1.4 43116 1dv1A 449 1.83e+01 1bncA b.84.2.1 28234 c.30.1.1 31641 d.142.1.2 41486 1f82A 424 1.85e+01 1f82A d.92.1.7 40307 1g4uS 383 1.89e+01 1g4uS a.24.11.1 16643 c.45.1.2 32691 1lg7A 182 1.92e+01 2spo 154 1.93e+01 1a6m a.1.1.2 15053 1jh2A 99 1.97e+01 b.35.1.1 63038 1f83A 425 1.97e+01 1f82A d.92.1.7 40306 2ezk 99 1.98e+01 2ezk a.4.1.2 16027 1ew6A 137 2.03e+01 1ewaA a.1.1.2 15637 1ewaA 137 2.03e+01 1ewaA a.1.1.2 15639 1e2wA 251 2.07e+01 1hcz b.2.6.1 22466 b.84.2.2 28252 1fd9A 213 2.11e+01 1fd9A d.26.1.1 59771 1uroA 367 2.13e+01 1uroA c.1.22.1 29675 1hvc 203 2.25e+01 1hvc b.50.1.1 26614 1kxu 333 2.28e+01 1jkw a.74.1.1 18358 a.74.1.1 18359 1ifrA 121 2.29e+01 1e8gA 560 2.38e+01 1qltA d.58.32.1 39455 d.145.1.1 41718 1nkl 78 2.46e+01 1nkl a.64.1.1 18140 1fliA 98 2.60e+01 1awcA a.4.5.21 16160 1vdrA 162 2.62e+01 1vdrA c.71.1.1 34893 1k4wA 252 2.63e+01 1guzA 310 2.70e+01 c.2.1.5 65586 d.162.1.1 65587 1k59A 123 2.75e+01 1tkiA 321 2.84e+01 1tkiA d.144.1.1 41638 1irsA 112 2.86e+01 1qqgA b.55.1.2 26991 1ee6A 197 2.88e+01 1ee6A b.80.1.1 28024 1hxvA 113 2.99e+01 1shg 62 3.02e+01 1ckaA b.34.2.1 24493 1mbd 153 3.08e+01 1a6m a.1.1.2 15033 1jxmA 301 3.10e+01 b.34.2.1 67420 c.37.1.1 67421 1bzpA 153 3.11e+01 1a6m a.1.1.2 15020 1kiuB 279 3.13e+01 1bx2B 191 3.18e+01 1iakB b.1.1.2 21610 d.19.1.1 38184 1cc1L 498 3.23e+01 1h2rL e.18.1.1 43301 1jjoC 261 3.32e+01 1dcs 311 3.34e+01 1dcs b.82.2.1 28124 1jhfA 202 3.37e+01 a.4.5.2 63057 b.87.1.1 63058 1ipwA 175 3.45e+01 2prd b.40.5.1 25427 1pwt 61 3.46e+01 1tud b.34.2.1 24490 1griA 217 3.53e+01 1griA b.34.2.1 24531 b.34.2.1 24532 d.93.1.1 40473 3cln 148 3.61e+01 1cll a.39.1.5 17286 1rdj1 113 3.61e+01 1rtm1 1rdo1 113 3.61e+01 1rtm1 1acc 735 3.62e+01 1acc f.11.1.1 43828 1kjwA 295 3.64e+01 b.34.2.1 68643 c.37.1.1 68644 1cmiA 85 3.70e+01 1cmiA d.39.1.1 38551 5hvpA 99 3.82e+01 1fmb b.50.1.1 26605 1jdiA 231 3.83e+01 c.74.1.1 66551 1ew6B 137 3.93e+01 1ewaA a.1.1.2 15638 9gafA 295 3.93e+01 1apyA d.153.1.5 42008 1ib8A 164 3.95e+01