(c) 1992-2000 Regents of the University of California, Santa Cruz
Sequence Alignment and Modeling Software System
http://www.cse.ucsc.edu/research/compbio/sam.html
Citations (SAM, SAM-T99, HMMs)
- R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
- K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting remote protein homologies, Bioinformatics 14(10):846-856, 1998.
- A. Krogh et al., Hidden Markov models in computational biology: Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
Sequence numbers correspond to the following labels:
-
- T0181 Hypothetical protein YHR087w, S. cerevisiae
-
- gi|6321879|ref|NP_011955.1|_1:111 (NC_001140) Hypothetical ORF; Yhr087wp [Saccharomyces cerevisiae]
- gi|731683sp|P38804|YHO7_YEAST HYPOTHETICAL 12.0 KD PROTEIN IN NAM8-GAR1 INTERGENIC REGION
- gi|626639|pir||S46719 hypothetical protein YHR087w - yeast (Saccharomyces cerevisiae)
- gi|487933|gb|AAB68927.1| (U00060) Yhr087wp [Saccharomyces cerevisiae]
-
- gi|19113391|ref|NP_596599.1|_5:92 (NC_003423) hypothetical protein [Schizosaccharomyces pombe]
- gi|11359161|pir||T50363 hypothetical protein SPBC21C3.19 [imported] - fission yeast (Schizosaccharomyces pombe)
- gi|7106084|emb|CAB76055.1| (AL157918) hypothetical protein [Schizosaccharomyces pombe]
10 20 30 40 50 60
| | | | | |
1 MSTVTKYFYKGENTDLIVFAASEELVDEYLKNPSIGKLSEVVELFEVFTPQDGRGAEGELGAASK
2 MSTVTKYFYKGENTDLIVFAASEELVDEYLKNPSIGKLSEVVELFEVFTPQDGRGAEGELGAASK
3 KANQTRVCYQPEDTTFIIIASNGPDVMRWRKDKTV-PLTEIVDSFQVFTTSNNKGNEGQLITASK
70 80 90 100 110
| | | | |
1 AQVENEFGKGKKIEEVIDLILRNGKPNSTTSSLKTKGGNAGTKAYN
2 AQVENEFGKGKKIEEVIDLILRNGKPNSTTSSLKTKGGNAGTKAYN
3 QELENTFGTSKDVD-VVTKILTDGK---------------------