PFRMAT SS TARGET T0181 AUTHOR 4069-6308-1312 METHOD Using neural net t2k-5740-IDaaHr-5-15-7-15-9-15-13-ebghstl-seeded.net METHOD This is a 4-layer network, with METHOD window units METHOD 5 15 METHOD 7 15 METHOD 9 15 METHOD 13 7 (1 EBGHSTL ) METHOD The input amino acid frequencies were determined from METHOD alignment T0181.t2k-thin90.a2m.gz METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1) METHOD Counts were regularized to probabilities using METHOD /projects/compbio/lib/recode3.20comp METHOD Total sequence weight for alignment was 2 METHOD MODEL 1 M C 0.996 S C 0.753 T C 0.435 V C 0.389 T E 0.507 K E 0.653 Y E 0.784 F E 0.775 Y E 0.665 K C 0.386 G C 0.344 E T 0.357 N T 0.302 T C 0.347 D E 0.559 L E 0.901 I E 0.947 V E 0.937 F E 0.900 A E 0.689 A C 0.359 S C 0.406 E C 0.322 E H 0.447 L H 0.571 V H 0.757 D H 0.831 E H 0.810 Y H 0.703 L H 0.601 K H 0.464 N C 0.485 P T 0.536 S T 0.538 I C 0.295 G C 0.405 K C 0.281 L H 0.506 S H 0.566 E H 0.495 V H 0.444 V E 0.416 E E 0.564 L E 0.673 F E 0.798 E E 0.873 V E 0.821 F E 0.770 T C 0.493 P C 0.441 Q T 0.483 D T 0.416 G S 0.311 R S 0.315 G C 0.368 A C 0.501 E C 0.342 G H 0.255 E H 0.329 L H 0.428 G H 0.478 A H 0.551 A H 0.558 S H 0.565 K H 0.805 A H 0.779 Q H 0.795 V H 0.756 E H 0.746 N H 0.664 E H 0.514 F T 0.414 G C 0.348 K T 0.320 G C 0.273 K C 0.336 K C 0.372 I H 0.863 E H 0.917 E H 0.925 V H 0.937 I H 0.949 D H 0.945 L H 0.951 I H 0.945 L H 0.921 R H 0.735 N T 0.662 G T 0.418 K C 0.708 P C 0.474 N C 0.412 S C 0.414 T C 0.337 T C 0.322 S C 0.291 S C 0.295 L C 0.291 K C 0.298 T C 0.303 K T 0.346 G T 0.390 G C 0.438 N C 0.373 A C 0.254 G C 0.290 T C 0.361 K C 0.296 A C 0.347 Y C 0.643 N C 0.997 END