PFRMAT SS TARGET T0181 METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-alpha-seeded.net METHOD This is a 4-layer network, with METHOD window units METHOD 5 15 METHOD 7 15 METHOD 9 15 METHOD 13 11 (1 ABCDEFGHIST ) METHOD The input amino acid frequencies were determined from METHOD alignment T0181.t2k-thin90.a2m.gz METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1) METHOD Counts were regularized to probabilities using METHOD /projects/compbio/lib/recode3.20comp METHOD Total sequence weight for alignment was 2 METHOD MODEL 1 M E 0.174 S E 0.220 T E 0.259 V E 0.340 T E 0.396 K E 0.445 Y E 0.448 F E 0.467 Y E 0.319 K B 0.292 G B 0.167 E I 0.267 N S 0.345 T E 0.346 D E 0.345 L E 0.653 I E 0.746 V E 0.582 F E 0.488 A E 0.302 A B 0.190 S B 0.192 E B 0.207 E H 0.347 L H 0.292 V H 0.411 D H 0.514 E H 0.497 Y H 0.399 L H 0.361 K H 0.231 N E 0.401 P I 0.354 S H 0.323 I H 0.247 G H 0.335 K H 0.347 L H 0.606 S H 0.777 E H 0.786 V H 0.812 V H 0.678 E H 0.690 L H 0.553 F E 0.355 E H 0.229 V E 0.324 F E 0.317 T B 0.382 P B 0.217 Q H 0.211 D B 0.269 G S 0.281 R B 0.282 G D 0.172 A H 0.170 E B 0.201 G S 0.250 E E 0.232 L H 0.232 G H 0.290 A H 0.360 A H 0.461 S H 0.402 K H 0.685 A H 0.694 Q H 0.694 V H 0.670 E H 0.534 N H 0.358 E H 0.449 F B 0.247 G S 0.222 K H 0.232 G S 0.223 K H 0.334 K H 0.300 I H 0.648 E H 0.858 E H 0.912 V H 0.918 I H 0.849 D H 0.897 L H 0.878 I H 0.832 L H 0.652 R H 0.450 N B 0.341 G S 0.425 K B 0.333 P B 0.244 N S 0.221 S E 0.216 T E 0.228 T E 0.230 S H 0.194 S E 0.225 L E 0.267 K E 0.267 T B 0.201 K H 0.184 G D 0.241 G D 0.192 N E 0.146 A H 0.169 G S 0.215 T E 0.208 K E 0.205 A H 0.200 Y H 0.180 N E 0.178 END