PFRMAT SS
TARGET T0181
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-alpha-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	   11 (1 ABCDEFGHIST )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0181.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 2
METHOD
MODEL 1
M E 0.174
S E 0.220
T E 0.259
V E 0.340
T E 0.396
K E 0.445
Y E 0.448
F E 0.467
Y E 0.319
K B 0.292
G B 0.167
E I 0.267
N S 0.345
T E 0.346
D E 0.345
L E 0.653
I E 0.746
V E 0.582
F E 0.488
A E 0.302
A B 0.190
S B 0.192
E B 0.207
E H 0.347
L H 0.292
V H 0.411
D H 0.514
E H 0.497
Y H 0.399
L H 0.361
K H 0.231
N E 0.401
P I 0.354
S H 0.323
I H 0.247
G H 0.335
K H 0.347
L H 0.606
S H 0.777
E H 0.786
V H 0.812
V H 0.678
E H 0.690
L H 0.553
F E 0.355
E H 0.229
V E 0.324
F E 0.317
T B 0.382
P B 0.217
Q H 0.211
D B 0.269
G S 0.281
R B 0.282
G D 0.172
A H 0.170
E B 0.201
G S 0.250
E E 0.232
L H 0.232
G H 0.290
A H 0.360
A H 0.461
S H 0.402
K H 0.685
A H 0.694
Q H 0.694
V H 0.670
E H 0.534
N H 0.358
E H 0.449
F B 0.247
G S 0.222
K H 0.232
G S 0.223
K H 0.334
K H 0.300
I H 0.648
E H 0.858
E H 0.912
V H 0.918
I H 0.849
D H 0.897
L H 0.878
I H 0.832
L H 0.652
R H 0.450
N B 0.341
G S 0.425
K B 0.333
P B 0.244
N S 0.221
S E 0.216
T E 0.228
T E 0.230
S H 0.194
S E 0.225
L E 0.267
K E 0.267
T B 0.201
K H 0.184
G D 0.241
G D 0.192
N E 0.146
A H 0.169
G S 0.215
T E 0.208
K E 0.205
A H 0.200
Y H 0.180
N E 0.178
END