# List of top-scoring protein chains for t2k-100-30-dssp_ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1ehyA 294 3.81e-01 1ehyA c.69.1.11 34693 1g4yR 148 4.63e-01 1cll a.39.1.5 60252 3cln 148 1.07e+00 1cll a.39.1.5 17286 1exrA 148 1.30e+00 1cll a.39.1.5 17299 1osa 148 1.37e+00 1cll a.39.1.5 17300 1cll 148 1.67e+00 1cll a.39.1.5 17263 1yacA 208 1.69e+00 1yacA c.33.1.2 31757 1floA 422 1.97e+00 1floA a.60.9.1 18106 d.163.1.1 42166 1uok 558 2.85e+00 1uok b.71.1.1 27801 c.1.8.1 28788 1qjgA 125 3.95e+00 1opy d.17.4.3 38102 1h6oA 204 3.97e+00 a.146.1.1 60689 1cex 214 4.06e+00 1cex c.23.9.1 31285 1cus 200 4.20e+00 1cex c.23.9.1 31287 1c4xA 285 4.23e+00 1c4xA c.69.1.10 34684 1fua 215 4.56e+00 2fua c.74.1.1 34973 1e4cP 215 4.64e+00 2fua c.74.1.1 34969 2fua 215 4.71e+00 2fua c.74.1.1 34977 1a6q 382 4.79e+00 1a6q d.158.1.1 42063 8cho 125 4.88e+00 1opy d.17.4.3 38108 1gkkA 297 5.97e+00 c.69.1.2 65248 1ggzA 148 6.44e+00 1dtdB 61 6.62e+00 1dtvA g.30.1.1 44962 1sfe 180 6.65e+00 1sfe a.4.2.1 16073 c.55.7.1 33748 1bno 87 6.71e+00 1bpyA a.60.6.1 18079 1hqsA 423 6.95e+00 1iso c.77.1.1 61154 1gklA 297 7.27e+00 c.69.1.2 65250 1g61A 228 9.16e+00 1g61A d.126.1.1 41126 1ldjA 760 9.17e+00 1fjgI 128 1.07e+01 1fjfI d.14.1.1 37559 1hruA 188 1.08e+01 1hruA d.115.1.1 40926 1i60A 278 1.12e+01 1dr9A 201 1.16e+01 1dr9A b.1.1.1 19762 b.1.1.3 21684 119l 164 1.18e+01 1l92 d.2.1.3 36622 1qhoA 686 1.19e+01 1cxlA b.1.1.5 21844 b.3.1.1 22513 b.71.1.1 27751 c.1.8.1 28738 1l58 164 1.22e+01 1l92 d.2.1.3 36635 1ggwA 140 1.23e+01 1ggwA a.39.1.5 60490 1f37A 110 1.35e+01 1f37A c.47.1.11 33088 1mai 131 1.39e+01 1mai b.55.1.1 26951 1ezwA 349 1.40e+01 1ezwA c.1.16.3 29558 1qbjA 81 1.52e+01 1qbjA a.4.5.19 16155 1hw1A 239 1.53e+01 1e2xA a.4.5.6 16111 a.78.1.1 18441 1i7qA 519 1.62e+01 1qdlA d.161.1.1 61901 1qgpA 77 1.62e+01 1qbjA a.4.5.19 16158 1faoA 126 1.72e+01 1faoA b.55.1.1 26974 1l92 164 1.75e+01 1l92 d.2.1.3 36629 1dtvA 67 1.80e+01 1dtvA g.30.1.1 44963 1wdcC 156 1.81e+01 1wdcC a.39.1.5 17317 1bmqB 88 1.85e+01 1pauB 1eziA 228 1.89e+01 1eyrA c.68.1.3 34512 1e2xA 243 1.91e+01 1e2xA a.4.5.6 16113 a.78.1.1 18443 1fjgC 239 1.94e+01 1fjfC d.52.3.1 38831 d.53.1.1 38839 1ck9A 104 1.95e+01 1ck9A d.79.3.1 39806 1hnoA 280 1.97e+01 1hnoA c.14.1.3 61095 1tns 76 2.01e+01 1qpmA a.4.5.26 16228 1nal1 297 2.10e+01 1nal3 1itxA 419 2.15e+01 2prgC 88 2.18e+01 2prgC a.137.6.1 19644 1hnuA 280 2.21e+01 1hnoA c.14.1.3 61096 1swuA 127 2.25e+01 1swuA b.61.1.1 27230 1fdyA 297 2.26e+01 1nal3 c.1.10.1 29071 1dgrM 93 2.27e+01 1caxB b.82.1.2 28101 1dgrW 93 2.31e+01 1caxB 2xis 387 2.32e+01 4xis c.1.15.3 29427 1gw9A 388 2.37e+01 1nal3 297 2.39e+01 1nal3 1fmtB 314 2.39e+01 1fmtA b.46.1.1 25759 c.65.1.1 34175 1chuA 540 2.41e+01 1chuA a.7.3.1 16325 c.3.1.4 30424 d.168.1.1 42307 1fmtA 314 2.49e+01 1fmtA b.46.1.1 25758 c.65.1.1 34174 1qo2A 241 2.56e+01 1qo2A c.1.2.1 28533 1hleA 345 2.58e+01 1ovaA e.1.1.1 42618 4xis 387 2.63e+01 4xis c.1.15.3 29421 3xis 387 2.68e+01 4xis c.1.15.3 29423 1eyrA 228 2.82e+01 1eyrA c.68.1.3 34514 1g5aA 628 2.89e+01 b.71.1.1 65152 c.1.8.1 65153 1ibcB 88 2.94e+01 1pauB 1j5eC 239 2.96e+01 1nbaA 264 3.03e+01 1nbaA c.33.1.1 31753 1fpzA 212 3.14e+01 1fpzA c.45.1.1 59976 1bak 119 3.21e+01 1bak b.55.1.1 26973 1sriA 121 3.26e+01 1swuA b.61.1.1 27276 1lgyA 269 3.38e+01 3tgl c.69.1.17 34758 2izhB 123 3.42e+01 1swuA b.61.1.1 27234 2izgB 123 3.42e+01 1swuA b.61.1.1 27236 1jcrA 377 3.50e+01 a.118.6.1 66506 1dr8B 344 3.64e+01 1cnzA c.77.1.1 35052 1vaoA 560 3.66e+01 1qltA d.58.32.1 39461 d.145.1.1 41724 1e6pA 499 3.75e+01 1e15A b.72.2.1 59314 c.1.8.5 59315 d.26.3.1 59316 1krhA 338 3.75e+01 1clxA 347 3.77e+01 1taxA c.1.8.3 28899 1yna 194 3.81e+01 1axkA b.29.1.11 24335