/projects/compbio/experiments/casp5/scripts-human/create_summary_html \ T0180 file:/projects/compbio/experiments/casp5/t0180/t0180-double > /projects/compbio/experiments/casp5/t0180/t0180-double/summary.html /projects/compbio/experiments/protein-predict/SAM_T02/scripts/add_master_table_head_summary_html \ >> /projects/compbio/experiments/casp5/t0180/t0180-double/summary.html /projects/compbio/experiments/protein-predict/SAM_T02/scripts/add_section_head_summary_html \ Inputs >> /projects/compbio/experiments/casp5/t0180/t0180-double/summary.html echo Received sequence T0180.a2m Received sequence T0180.a2m /projects/compbio/experiments/protein-predict/SAM_T02/scripts/add_summary_html \ "Submitted sequence(s)" \ file:/projects/compbio/experiments/casp5/t0180/t0180-double/T0180.a2m T0180.a2m >> /projects/compbio/experiments/casp5/t0180/t0180-double/summary.html /projects/compbio/experiments/protein-predict/SAM_T02/scripts/add_summary_html \ "Provided documentation" \ file:/projects/compbio/experiments/casp5/t0180/t0180-double/T0180.doc.html T0180.doc.html >> /projects/compbio/experiments/casp5/t0180/t0180-double/summary.html /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/scripts2k/target2k -out T0180.t2k \ -seed T0180.a2m @@@@ chgrp protein /projects/compbio/tmp/target2k-cc73-14710 @@@@ cp /projects/compbio/experiments/casp5/t0180/t0180-double/T0180.a2m m0.a2m @@@@ checkseq foo -alphabet protein -db m0.a2m > init.check SAM: checkseq v3.3.1 (December 20, 2001) compiled 04/11/02_15:35:11 Done with sequence reading # About to count sequences in /projects/compbio/data/nrp/nr /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/scripts2k/target2k: E-value thresholds used are prefilter: 0.01, actual: 0.0001 prefilter: 1, actual: 0.0002 prefilter: 10, actual: 0.001 prefilter: 400, actual: 0.005 /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/scripts2k/target2k: aweight_bits are 0.8, 0.7, 0.6, 0.5 /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/scripts2k/target2k: db_size= 1034565 reverse_diff= 4 /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/scripts2k/target2k: blast_max_report= 20000 /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/scripts2k/target2k: db=/projects/compbio/data/nrp/nr /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/scripts2k/target2k: aweight_method=1 aweight_exponent=10 /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/scripts2k/target2k: force_seed=1 constraints=1 /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/scripts2k/target2k: jump_in=0.2 jump_out=1 fimstrength=1 fimtrans=-1 @@@@ wu-blast-prefilter -tmp_dir /projects/compbio/tmp/target2k-cc73-14710 -out prefilter -seed m0.a2m -prefilter_thresholds 0.01,1,10,400 -db /projects/compbio/data/nrp/nr -blast_max_report 20000 main::echo_parameters() called too early to check prototype at /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/scripts2k/wu-blast-prefilter line 90. main::build_query_files() called too early to check prototype at /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/scripts2k/wu-blast-prefilter line 96. main::blast_query_to_database() called too early to check prototype at /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/scripts2k/wu-blast-prefilter line 99. main::accumulate_blast_hits() called too early to check prototype at /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/scripts2k/wu-blast-prefilter line 100. @@@@ chgrp protein /projects/compbio/tmp/target2k-cc73-14710/blast-prefilter-cc73-14724 /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/scripts2k/wu-blast-prefilter: E-value thresholds used are For /projects/postgres/tmp/target2k-cc73-14710/prefilter_1.fa, 0.01 For /projects/postgres/tmp/target2k-cc73-14710/prefilter_2.fa, 1 For /projects/postgres/tmp/target2k-cc73-14710/prefilter_3.fa, 10 For /projects/postgres/tmp/target2k-cc73-14710/prefilter_4.fa, 400 /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/scripts2k/wu-blast-prefilter: db=/projects/compbio/data/nrp/nr @@@@ uniqueseq init -alignfile /projects/postgres/tmp/target2k-cc73-14710/m0.a2m -a protein -a2mdots 0 SAM: uniqueseq v3.3.1 (December 20, 2001) compiled 04/11/02_15:35:25 Reading alignment file /projects/postgres/tmp/target2k-cc73-14710/m0.a2m (1 sequence, 118 columns) as A2M alignment. Writing sequence output to init.a2m. No sequences have been dropped. @@@@ /projects/compbio/bin/wu-blastp /projects/compbio/data/nrp/nr 1.fasta E=400 V=20000 B=0 -gi > 1.fasta-blast.out WARNING: hspmax=1000 was exceeded with 1 of the database sequences. Searched 1034,565 sequences # parsing wu-blastp output @@@@ rm -f 1.fasta < /dev/null @@@@ rm -f 1.fasta-blast.out < /dev/null # Extracting hits in FASTA format from /projects/compbio/data/nrp/nr @@@@ rm -rf /projects/compbio/tmp/target2k-cc73-14710/blast-prefilter-cc73-14724 < /dev/null @@@@ modelfromalign unused -alignfile m0.a2m \ -constraints_from_align 1 -constraints_out m0.cst SAM: modelfromalign v3.3.1 (December 20, 2001) compiled 04/11/02_15:34:16 Reading alignment file m0.a2m (1 sequence, 118 columns) as A2M alignment. # About to count sequences in m0.a2m # About to count sequences in prefilter_1.fa @@@@ modelfromalign tmp_1-a -alignfile m0.a2m \ -insert /projects/compbio/lib/gap1.5.regularizer \ -aweight_bits 0.8\ -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1 \ -aweight_method 1\ -aweight_exponent 10 -constraints m0.cst -constraints_out tmp_1-a.cst Reading parameter file /projects/compbio/lib/gap1.5.regularizer /projects/compbio/lib/gap1.5.regularizer(1): Reading REGULARIZER: gap1.5. Weak regularizer, gaps average 1.5, matches average 10 SAM: modelfromalign v3.3.1 (December 20, 2001) compiled 04/11/02_15:34:16 Reading alignment file m0.a2m (1 sequence, 118 columns) as A2M alignment. DEBUG: include_all=0 @@@@ hmmscore tmp_1-a -i tmp_1-a.mod -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1\ -dpstyle 0 \ -subtract_null 4 -sort 2 \ -db_size 1034565 \ -adpstyle 1 \ -align_short 0 \ -simple_threshold -27.0598319783595 -Emax 0.0001 \ -mdEmax 0.0001\ -select_score 4 \ -select_seq 4 -select_mdalign 4 -select_md 4 -Motifcutoff 0.169491525423729 -db prefilter_1.fa -constraints tmp_1-a.cst -constraints_out tmp_1-a-md.cst Reading parameter file tmp_1-a.mod tmp_1-a.mod(22): Reading MODEL -- Model from alignment file m0.a2m SAM: hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model tmp_1-a.mod WARNING: Reverse null model and E-value calculations are being made without model calibration. Use -calibrate first for better results. Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -23.667587 Database has 191 sequences with 47597 residues. @@@@ sortseq tmp_1-a-sort -alignfile tmp_1-a.mult \ -NLLfile tmp_1-a.mstat -a2mdots 0 SAM: sortseq v3.3.1 (December 20, 2001) compiled 04/11/02_15:35:00 Reading alignment file tmp_1-a.mult (1 sequence, 118 columns) as A2M alignment. Reading scores from file tmp_1-a.mstat Writing sequence output to tmp_1-a-sort.a2m. @@@@ cat m0.a2m tmp_1-a-sort.a2m > tmp_1-a.train.seq @@@@ cat m0.cst tmp_1-a-md.cst > tmp_1-a.train.cst # About to count sequences in tmp_1-a.train.seq # num_seqs=2 nll_thresh=-23.0598319783595 frac_id=1 @@@@ uniqueseq thinned_tmp -alignfile tmp_1-a.train.seq -a protein \ -percent_id 1 -a2mdots 0 SAM: uniqueseq v3.3.1 (December 20, 2001) compiled 04/11/02_15:35:25 Reading alignment file tmp_1-a.train.seq (2 sequences, 118 columns) as A2M alignment. Writing sequence output to thinned_tmp.a2m. Dropping 1 (of 2) sequences with > 100.0% id 1 sequence left after dropping 1 of 2 sequences. @@@@ modelfromalign junk_for_weights \ -alignfile tmp_1-a.train.seq \ -aweight_bits 0.8\ -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1 \ -aweight_method 1\ -aweight_exponent 10 SAM: modelfromalign v3.3.1 (December 20, 2001) compiled 04/11/02_15:34:16 Reading alignment file tmp_1-a.train.seq (1 sequence, 118 columns) as A2M alignment. @@@@ buildmodel tmp_1-b -insert tmp_1-a.mod\ -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1\ -modellength 0 \ -internal_weight 0 \ -anneal_length 2 \ -many_files 1 \ -Nseq 20000\ -nsurgery 0 \ -fracinsert 0.2 \ -cutinsert 0.25 -cutmatch 0.2 -initial_noise 0.0001 -anneal_noise 0.000001 \ -internal_weight 0 \ -train tmp_1-a.train.seq \ -nmodels 1\ -insert /projects/compbio/lib/gap1.5.regularizer -sequence_weights tmp_1-a.w -constraints tmp_1-a.train.cst Reading parameter file tmp_1-a.mod tmp_1-a.mod(22): Reading MODEL -- Model from alignment file m0.a2m Command line option(48): internal_weight has already been set. Using 0. Reading parameter file /projects/compbio/lib/gap1.5.regularizer /projects/compbio/lib/gap1.5.regularizer(1): Reading REGULARIZER: gap1.5. Weak regularizer, gaps average 1.5, matches average 10 SAM: buildmodel v3.3.1 (December 20, 2001) compiled 04/11/02_15:33:50 Warning: only 1 training sequences; Buildmodel needs 5--100 sequences for best results unless -sequence_models is used. -326.58 -326.58 -326.58 0.00 3 0 119 @@@@ hmmscore tmp_1-b -i tmp_1-b.mod -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1\ -dpstyle 0 \ -subtract_null 4 -sort 2 \ -db_size 1034565 \ -db m0.a2m -db tmp_1-a.sel \ -select_score 4 \ -select_seq 4 \ -simple_threshold -27.0598319783595 -Emax 0.0001 \ -select_mdalign 4 -select_md 4 \ -adpstyle 1 \ -Motifcutoff 0.169491525423729 \ -align_short 5 -mdEmax 0.0001 -constraints tmp_1-a.train.cst -constraints_out m_1.cst Reading parameter file tmp_1-b.mod tmp_1-b.mod(18): Reading MODEL -- Final model for run tmp_1-b (internally generated FIMs removed) SAM: hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model tmp_1-b.mod WARNING: Reverse null model and E-value calculations are being made without model calibration. Use -calibrate first for better results. Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -213.038010 Database has 2 sequences with 171 residues. @@@@ cp -f tmp_1-b.mult m_1.a2m # About to count sequences in prefilter_2.fa @@@@ modelfromalign tmp_2-a -alignfile m_1.a2m \ -insert /projects/compbio/lib/stiff-gap5.regularizer \ -aweight_bits 0.7\ -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1 \ -aweight_method 1\ -aweight_exponent 10 -constraints m_1.cst -constraints_out tmp_2-a.cst Reading parameter file /projects/compbio/lib/stiff-gap5.regularizer /projects/compbio/lib/stiff-gap5.regularizer(1): Reading REGULARIZER: gap5. stiff regularizer, gaps averge 5, matches average 10 SAM: modelfromalign v3.3.1 (December 20, 2001) compiled 04/11/02_15:34:16 Reading alignment file m_1.a2m (2 sequences, 118 columns) as A2M alignment. DEBUG: include_all=0 @@@@ hmmscore tmp_2-a -i tmp_2-a.mod -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1\ -dpstyle 0 \ -subtract_null 4 -sort 2 \ -db_size 1034565 \ -adpstyle 1 \ -align_short 0 \ -simple_threshold -26.3666847977029 -Emax 0.0002 \ -mdEmax 0.0002\ -select_score 4 \ -select_seq 4 -select_mdalign 4 -select_md 4 -Motifcutoff 0.169491525423729 -db prefilter_2.fa -constraints tmp_2-a.cst -constraints_out tmp_2-a-md.cst Reading parameter file tmp_2-a.mod tmp_2-a.mod(22): Reading MODEL -- Model from alignment file m_1.a2m SAM: hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model tmp_2-a.mod WARNING: Reverse null model and E-value calculations are being made without model calibration. Use -calibrate first for better results. Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -22.509670 Database has 698 sequences with 252395 residues. @@@@ sortseq tmp_2-a-sort -alignfile tmp_2-a.mult \ -NLLfile tmp_2-a.mstat -a2mdots 0 SAM: sortseq v3.3.1 (December 20, 2001) compiled 04/11/02_15:35:00 Reading alignment file tmp_2-a.mult (1 sequence, 118 columns) as A2M alignment. Reading scores from file tmp_2-a.mstat Writing sequence output to tmp_2-a-sort.a2m. @@@@ cat m0.a2m tmp_2-a-sort.a2m > tmp_2-a.train.seq @@@@ cat m0.cst tmp_2-a-md.cst > tmp_2-a.train.cst # About to count sequences in tmp_2-a.train.seq # num_seqs=2 nll_thresh=-22.3666847977029 frac_id=1 @@@@ uniqueseq thinned_tmp -alignfile tmp_2-a.train.seq -a protein \ -percent_id 1 -a2mdots 0 SAM: uniqueseq v3.3.1 (December 20, 2001) compiled 04/11/02_15:35:25 Reading alignment file tmp_2-a.train.seq (2 sequences, 118 columns) as A2M alignment. Writing sequence output to thinned_tmp.a2m. Dropping 1 (of 2) sequences with > 100.0% id 1 sequence left after dropping 1 of 2 sequences. @@@@ modelfromalign junk_for_weights \ -alignfile tmp_2-a.train.seq \ -aweight_bits 0.7\ -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1 \ -aweight_method 1\ -aweight_exponent 10 SAM: modelfromalign v3.3.1 (December 20, 2001) compiled 04/11/02_15:34:16 Reading alignment file tmp_2-a.train.seq (1 sequence, 118 columns) as A2M alignment. @@@@ buildmodel tmp_2-b -insert tmp_2-a.mod\ -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1\ -modellength 0 \ -internal_weight 0 \ -anneal_length 2 \ -many_files 1 \ -Nseq 20000\ -nsurgery 0 \ -fracinsert 0.2 \ -cutinsert 0.25 -cutmatch 0.2 -initial_noise 0.0001 -anneal_noise 0.000001 \ -internal_weight 0 \ -train tmp_2-a.train.seq \ -nmodels 1\ -insert /projects/compbio/lib/stiff-gap5.regularizer -sequence_weights tmp_2-a.w -constraints tmp_2-a.train.cst Reading parameter file tmp_2-a.mod tmp_2-a.mod(22): Reading MODEL -- Model from alignment file m_1.a2m Command line option(48): internal_weight has already been set. Using 0. Reading parameter file /projects/compbio/lib/stiff-gap5.regularizer /projects/compbio/lib/stiff-gap5.regularizer(1): Reading REGULARIZER: gap5. stiff regularizer, gaps averge 5, matches average 10 SAM: buildmodel v3.3.1 (December 20, 2001) compiled 04/11/02_15:33:50 Warning: only 1 training sequences; Buildmodel needs 5--100 sequences for best results unless -sequence_models is used. -325.33 -325.33 -325.33 0.00 3 0 119 @@@@ hmmscore tmp_2-b -i tmp_2-b.mod -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1\ -dpstyle 0 \ -subtract_null 4 -sort 2 \ -db_size 1034565 \ -db m0.a2m -db tmp_2-a.sel \ -select_score 4 \ -select_seq 4 \ -simple_threshold -26.3666847977029 -Emax 0.0002 \ -select_mdalign 4 -select_md 4 \ -adpstyle 1 \ -Motifcutoff 0.169491525423729 \ -align_short 5 -mdEmax 0.0002 -constraints tmp_2-a.train.cst -constraints_out m_2.cst Reading parameter file tmp_2-b.mod tmp_2-b.mod(18): Reading MODEL -- Final model for run tmp_2-b (internally generated FIMs removed) SAM: hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model tmp_2-b.mod WARNING: Reverse null model and E-value calculations are being made without model calibration. Use -calibrate first for better results. Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -214.597519 Database has 2 sequences with 171 residues. @@@@ cp -f tmp_2-b.mult m_2.a2m # About to count sequences in prefilter_3.fa @@@@ modelfromalign tmp_3-a -alignfile m_2.a2m \ -insert /projects/compbio/lib/stiff-gap5.regularizer \ -aweight_bits 0.6\ -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1 \ -aweight_method 1\ -aweight_exponent 10 -constraints m_2.cst -constraints_out tmp_3-a.cst Reading parameter file /projects/compbio/lib/stiff-gap5.regularizer /projects/compbio/lib/stiff-gap5.regularizer(1): Reading REGULARIZER: gap5. stiff regularizer, gaps averge 5, matches average 10 SAM: modelfromalign v3.3.1 (December 20, 2001) compiled 04/11/02_15:34:16 Reading alignment file m_2.a2m (2 sequences, 118 columns) as A2M alignment. DEBUG: include_all=0 @@@@ hmmscore tmp_3-a -i tmp_3-a.mod -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1\ -dpstyle 0 \ -subtract_null 4 -sort 2 \ -db_size 1034565 \ -adpstyle 1 \ -align_short 0 \ -simple_threshold -24.7572468844955 -Emax 0.001 \ -mdEmax 0.001\ -select_score 4 \ -select_seq 4 -select_mdalign 4 -select_md 4 -Motifcutoff 0.169491525423729 -db prefilter_3.fa -constraints tmp_3-a.cst -constraints_out tmp_3-a-md.cst Reading parameter file tmp_3-a.mod tmp_3-a.mod(22): Reading MODEL -- Model from alignment file m_2.a2m SAM: hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model tmp_3-a.mod WARNING: Reverse null model and E-value calculations are being made without model calibration. Use -calibrate first for better results. Calculating Distances (. = 1000 sequences) .. Average NLL-Simple NULL score: -20.990877 Database has 1476 sequences with 598289 residues. @@@@ sortseq tmp_3-a-sort -alignfile tmp_3-a.mult \ -NLLfile tmp_3-a.mstat -a2mdots 0 SAM: sortseq v3.3.1 (December 20, 2001) compiled 04/11/02_15:35:00 Reading alignment file tmp_3-a.mult (1 sequence, 118 columns) as A2M alignment. Reading scores from file tmp_3-a.mstat Writing sequence output to tmp_3-a-sort.a2m. @@@@ cat m0.a2m tmp_3-a-sort.a2m > tmp_3-a.train.seq @@@@ cat m0.cst tmp_3-a-md.cst > tmp_3-a.train.cst # About to count sequences in tmp_3-a.train.seq # num_seqs=2 nll_thresh=-20.7572468844955 frac_id=1 @@@@ uniqueseq thinned_tmp -alignfile tmp_3-a.train.seq -a protein \ -percent_id 1 -a2mdots 0 SAM: uniqueseq v3.3.1 (December 20, 2001) compiled 04/11/02_15:35:25 Reading alignment file tmp_3-a.train.seq (2 sequences, 118 columns) as A2M alignment. Writing sequence output to thinned_tmp.a2m. Dropping 1 (of 2) sequences with > 100.0% id 1 sequence left after dropping 1 of 2 sequences. @@@@ modelfromalign junk_for_weights \ -alignfile tmp_3-a.train.seq \ -aweight_bits 0.6\ -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1 \ -aweight_method 1\ -aweight_exponent 10 SAM: modelfromalign v3.3.1 (December 20, 2001) compiled 04/11/02_15:34:16 Reading alignment file tmp_3-a.train.seq (1 sequence, 118 columns) as A2M alignment. @@@@ buildmodel tmp_3-b -insert tmp_3-a.mod\ -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1\ -modellength 0 \ -internal_weight 0 \ -anneal_length 2 \ -many_files 1 \ -Nseq 20000\ -nsurgery 0 \ -fracinsert 0.2 \ -cutinsert 0.25 -cutmatch 0.2 -initial_noise 0.0001 -anneal_noise 0.000001 \ -internal_weight 0 \ -train tmp_3-a.train.seq \ -nmodels 1\ -insert /projects/compbio/lib/stiff-gap5.regularizer -sequence_weights tmp_3-a.w -constraints tmp_3-a.train.cst Reading parameter file tmp_3-a.mod tmp_3-a.mod(22): Reading MODEL -- Model from alignment file m_2.a2m Command line option(48): internal_weight has already been set. Using 0. Reading parameter file /projects/compbio/lib/stiff-gap5.regularizer /projects/compbio/lib/stiff-gap5.regularizer(1): Reading REGULARIZER: gap5. stiff regularizer, gaps averge 5, matches average 10 SAM: buildmodel v3.3.1 (December 20, 2001) compiled 04/11/02_15:33:50 Warning: only 1 training sequences; Buildmodel needs 5--100 sequences for best results unless -sequence_models is used. -325.47 -325.47 -325.47 0.00 3 0 119 @@@@ hmmscore tmp_3-b -i tmp_3-b.mod -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1\ -dpstyle 0 \ -subtract_null 4 -sort 2 \ -db_size 1034565 \ -db m0.a2m -db tmp_3-a.sel \ -select_score 4 \ -select_seq 4 \ -simple_threshold -24.7572468844955 -Emax 0.001 \ -select_mdalign 4 -select_md 4 \ -adpstyle 1 \ -Motifcutoff 0.169491525423729 \ -align_short 5 -mdEmax 0.001 -constraints tmp_3-a.train.cst -constraints_out m_3.cst Reading parameter file tmp_3-b.mod tmp_3-b.mod(18): Reading MODEL -- Final model for run tmp_3-b (internally generated FIMs removed) SAM: hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model tmp_3-b.mod WARNING: Reverse null model and E-value calculations are being made without model calibration. Use -calibrate first for better results. Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -212.783508 Database has 2 sequences with 171 residues. @@@@ cp -f tmp_3-b.mult m_3.a2m # About to count sequences in prefilter_4.fa @@@@ modelfromalign tmp_4-a -alignfile m_3.a2m \ -insert /projects/compbio/lib/fssp-trained.regularizer \ -aweight_bits 0.5\ -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1 \ -aweight_method 1\ -aweight_exponent 10 -constraints m_3.cst -constraints_out tmp_4-a.cst Reading parameter file /projects/compbio/lib/fssp-trained.regularizer /projects/compbio/lib/fssp-trained.regularizer(1): Reading REGULARIZER: transitions from FSSP and pseudocounts for diverse weighted HSSP SAM: modelfromalign v3.3.1 (December 20, 2001) compiled 04/11/02_15:34:16 Reading alignment file m_3.a2m (2 sequences, 118 columns) as A2M alignment. DEBUG: include_all=0 @@@@ hmmscore tmp_4-a -i tmp_4-a.mod -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1\ -dpstyle 0 \ -subtract_null 4 -sort 2 \ -db_size 1034565 \ -adpstyle 1 \ -align_short 0 \ -simple_threshold -23.1478089681951 -Emax 0.005 \ -mdEmax 0.005\ -select_score 4 \ -select_seq 4 -select_mdalign 4 -select_md 4 -Motifcutoff 0.169491525423729 -db prefilter_4.fa -constraints tmp_4-a.cst -constraints_out tmp_4-a-md.cst Reading parameter file tmp_4-a.mod tmp_4-a.mod(22): Reading MODEL -- Model from alignment file m_3.a2m SAM: hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model tmp_4-a.mod WARNING: Reverse null model and E-value calculations are being made without model calibration. Use -calibrate first for better results. Calculating Distances (. = 1000 sequences) ...... Average NLL-Simple NULL score: -14.702921 Database has 5047 sequences with 2202622 residues. @@@@ sortseq tmp_4-a-sort -alignfile tmp_4-a.mult \ -NLLfile tmp_4-a.mstat -a2mdots 0 SAM: sortseq v3.3.1 (December 20, 2001) compiled 04/11/02_15:35:00 Reading alignment file tmp_4-a.mult (1 sequence, 118 columns) as A2M alignment. Reading scores from file tmp_4-a.mstat Writing sequence output to tmp_4-a-sort.a2m. @@@@ cat m0.a2m tmp_4-a-sort.a2m > tmp_4-a.train.seq @@@@ cat m0.cst tmp_4-a-md.cst > tmp_4-a.train.cst # About to count sequences in tmp_4-a.train.seq # num_seqs=2 nll_thresh=-19.1478089681951 frac_id=1 @@@@ uniqueseq thinned_tmp -alignfile tmp_4-a.train.seq -a protein \ -percent_id 1 -a2mdots 0 SAM: uniqueseq v3.3.1 (December 20, 2001) compiled 04/11/02_15:35:25 Reading alignment file tmp_4-a.train.seq (2 sequences, 118 columns) as A2M alignment. Writing sequence output to thinned_tmp.a2m. Dropping 1 (of 2) sequences with > 100.0% id 1 sequence left after dropping 1 of 2 sequences. @@@@ modelfromalign junk_for_weights \ -alignfile tmp_4-a.train.seq \ -aweight_bits 0.5\ -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1 \ -aweight_method 1\ -aweight_exponent 10 SAM: modelfromalign v3.3.1 (December 20, 2001) compiled 04/11/02_15:34:16 Reading alignment file tmp_4-a.train.seq (1 sequence, 118 columns) as A2M alignment. @@@@ buildmodel tmp_4-b -insert tmp_4-a.mod\ -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1\ -modellength 0 \ -internal_weight 0 \ -anneal_length 2 \ -many_files 1 \ -Nseq 20000\ -nsurgery 0 \ -fracinsert 0.2 \ -cutinsert 0.25 -cutmatch 0.2 -initial_noise 0.0001 -anneal_noise 0.000001 \ -internal_weight 0 \ -train tmp_4-a.train.seq \ -nmodels 1\ -insert /projects/compbio/lib/fssp-trained.regularizer -sequence_weights tmp_4-a.w -constraints tmp_4-a.train.cst Reading parameter file tmp_4-a.mod tmp_4-a.mod(22): Reading MODEL -- Model from alignment file m_3.a2m Command line option(48): internal_weight has already been set. Using 0. Reading parameter file /projects/compbio/lib/fssp-trained.regularizer /projects/compbio/lib/fssp-trained.regularizer(1): Reading REGULARIZER: transitions from FSSP and pseudocounts for diverse weighted HSSP SAM: buildmodel v3.3.1 (December 20, 2001) compiled 04/11/02_15:33:50 Warning: only 1 training sequences; Buildmodel needs 5--100 sequences for best results unless -sequence_models is used. -326.30 -326.30 -326.30 0.00 3 0 119 @@@@ hmmscore tmp_4-b -i tmp_4-b.mod -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1\ -dpstyle 0 \ -subtract_null 4 -sort 2 \ -db_size 1034565 \ -db m0.a2m -db tmp_4-a.sel \ -select_score 4 \ -select_seq 4 \ -simple_threshold -23.1478089681951 -Emax 0.005 \ -select_mdalign 4 -select_md 4 \ -adpstyle 1 \ -Motifcutoff 0.169491525423729 \ -align_short 5 -mdEmax 0.005 -constraints tmp_4-a.train.cst -constraints_out m_4.cst Reading parameter file tmp_4-b.mod tmp_4-b.mod(18): Reading MODEL -- Final model for run tmp_4-b (internally generated FIMs removed) SAM: hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model tmp_4-b.mod WARNING: Reverse null model and E-value calculations are being made without model calibration. Use -calibrate first for better results. Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -210.457001 Database has 2 sequences with 171 residues. @@@@ cp -f tmp_4-b.mult m_4.a2m @@@@ modelfromalign tmp_5-a -alignfile m_4.a2m \ -insert /projects/compbio/lib/fssp-trained.regularizer \ -aweight_bits 0.5\ -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1 \ -aweight_method 1\ -aweight_exponent 10 -constraints m_4.cst -constraints_out tmp_5-a.cst Reading parameter file /projects/compbio/lib/fssp-trained.regularizer /projects/compbio/lib/fssp-trained.regularizer(1): Reading REGULARIZER: transitions from FSSP and pseudocounts for diverse weighted HSSP SAM: modelfromalign v3.3.1 (December 20, 2001) compiled 04/11/02_15:34:16 Reading alignment file m_4.a2m (2 sequences, 118 columns) as A2M alignment. DEBUG: include_all=0 @@@@ hmmscore tmp_5-a -i tmp_5-a.mod -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1\ -dpstyle 0 \ -subtract_null 4 -sort 2 \ -db_size 1034565 \ -adpstyle 5 \ -align_short 0 \ -simple_threshold -23.1478089681951 -Emax 0.005 \ -mdEmax 0.005\ -select_score 4 \ -select_seq 4 -select_mdalign 4 -select_md 4 -Motifcutoff 0.169491525423729 -db prefilter_4.fa -constraints tmp_5-a.cst -constraints_out tmp_5-a-md.cst Reading parameter file tmp_5-a.mod tmp_5-a.mod(22): Reading MODEL -- Model from alignment file m_4.a2m SAM: hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model tmp_5-a.mod WARNING: Reverse null model and E-value calculations are being made without model calibration. Use -calibrate first for better results. Calculating Distances (. = 1000 sequences) ...... Average NLL-Simple NULL score: -14.702921 Database has 5047 sequences with 2202622 residues. @@@@ sortseq tmp_5-a-sort -alignfile tmp_5-a.mult \ -NLLfile tmp_5-a.mstat -a2mdots 0 SAM: sortseq v3.3.1 (December 20, 2001) compiled 04/11/02_15:35:00 Reading alignment file tmp_5-a.mult (1 sequence, 118 columns) as A2M alignment. Reading scores from file tmp_5-a.mstat Writing sequence output to tmp_5-a-sort.a2m. @@@@ cat m0.a2m tmp_5-a-sort.a2m > tmp_5-a.train.seq @@@@ cat m0.cst tmp_5-a-md.cst > tmp_5-a.train.cst @@@@ cp tmp_5-a.train.seq /projects/compbio/experiments/casp5/t0180/t0180-double/T0180.t2k.a2m @@@@ cp tmp_5-a.train.cst /projects/compbio/experiments/casp5/t0180/t0180-double/T0180.t2k.cst @@@@ rm -rf /projects/compbio/tmp/target2k-cc73-14710 < /dev/null gzip -f T0180.t2k.a2m /projects/compbio/experiments/protein-predict/SAM_T02/scripts/add_summary_html \ "SAM_T02 multiple alignment in a2m format" \ file:/projects/compbio/experiments/casp5/t0180/t0180-double/T0180.t2k.a2m.gz T0180.t2k.a2m.gz >> /projects/compbio/experiments/casp5/t0180/t0180-double/summary.html gunzip -c T0180.t2k.a2m.gz > tmp.a2m /projects/compbio/bin/scripts/a2m2html -a2m_in tmp.a2m > T0180.t2k.pa.html SAM: /projects/compbio/bin/i686/prettyalign v3.3.2 (February, 2001) compiled 06/24/02_10:51:09 rm tmp.a2m /projects/compbio/experiments/protein-predict/SAM_T02/scripts/add_summary_html \ "SAM_T02 multiple alignment in pretty html format" \ file:/projects/compbio/experiments/casp5/t0180/t0180-double/T0180.t2k.pa.html T0180.t2k.pa.html >> /projects/compbio/experiments/casp5/t0180/t0180-double/summary.html /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/scripts2k/w0.5 T0180.t2k.a2m.gz T0180.t2k-w0.5.mod.tmp @@@@ chgrp protein /var/tmp/tmp-build-weighted-model-cc73-14880 @@@@ uniqueseq /var/tmp/tmp-build-weighted-model-cc73-14880/tmp -alignfile T0180.t2k.a2m.gz \ -a protein -percent_id 0.8 SAM: uniqueseq v3.3.2 (February, 2001) compiled 06/24/02_10:53:16 Reading alignment file T0180.t2k.a2m.gz (2 sequences, 118 columns) as A2M alignment. Writing sequence output to /var/tmp/tmp-build-weighted-model-cc73-14880/tmp.a2m. Dropping 1 (of 2) sequences with > 80.0% id 1 sequence left after dropping 1 of 2 sequences. @@@@ modelfromalign /var/tmp/tmp-build-weighted-model-cc73-14880/tmp -alignfile /var/tmp/tmp-build-weighted-model-cc73-14880/tmp.a2m \ -insert /projects/compbio/lib/fssp-trained.regularizer \ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -prior_library /projects/compbio/lib/recode3.20comp \ -binary_output 1 -a protein -aweight_method 1 -aweight_bits 0.5 -aweight_exponent 10 Reading parameter file /projects/compbio/lib/fssp-trained.regularizer /projects/compbio/lib/fssp-trained.regularizer(1): Reading REGULARIZER: transitions from FSSP and pseudocounts for diverse weighted HSSP SAM: modelfromalign v3.3.2 (February, 2001) compiled 06/24/02_10:50:57 Reading alignment file /var/tmp/tmp-build-weighted-model-cc73-14880/tmp.a2m (1 sequence, 118 columns) as A2M alignment. @@@@ cp -f /var/tmp/tmp-build-weighted-model-cc73-14880/tmp.mod T0180.t2k-w0.5.mod.tmp @@@@ rm -rf /var/tmp/tmp-build-weighted-model-cc73-14880 > /projects/compbio/experiments/casp5/t0180/t0180-double/summary.html /projects/compbio/experiments/protein-predict/SAM_T02/scripts/end_section_summary_html \ >> /projects/compbio/experiments/casp5/t0180/t0180-double/summary.html /projects/compbio/experiments/protein-predict/SAM_T02/scripts/add_section_head_summary_html \ "Secondary Structure Prediction" >> /projects/compbio/experiments/casp5/t0180/t0180-double/summary.html /projects/compbio/bin/i686/uniqueseq unique-tmp -alignfile T0180.t2k.a2m.gz -percent_id 0.90 SAM: /projects/compbio/bin/i686/uniqueseq v3.3.2 (February, 2001) compiled 06/24/02_10:53:16 Reading alignment file T0180.t2k.a2m.gz (2 sequences, 118 columns) as A2M alignment. Writing sequence output to unique-tmp.a2m. Dropping 1 (of 2) sequences with > 90.0% id 1 sequence left after dropping 1 of 2 sequences. gzip -9f unique-tmp.a2m mv unique-tmp.a2m.gz T0180.t2k-thin90.a2m.gz echo ReadNeuralNet /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/predict_2nd/networks/t2k-5740-IDaaHr-5-15-7-15-9-15-13-ebghstl-seeded.net > tmp.script echo ReadA2M T0180.t2k-thin90.a2m.gz >> tmp.script echo PrintPrediction T0180.t2k.dssp-ebghstl 4069-6308-1312 >> tmp.script echo PrintPredictionFasta T0180.t2k.dssp-ebghstl.seq >> tmp.script echo PrintRDB T0180.t2k.dssp-ebghstl.rdb >> tmp.script /cse/faculty/karplus/dna/predict-2nd/predict-2nd < tmp.script # command:# Neural network set to t2k-5740-IDaaHr-5-15-7-15-9-15-13-ebghstl-seeded.net # command:# Reading A2M format from T0180.t2k-thin90.a2m.gz # Using SequenceWeight HenikoffWeight(-1, 1) # requested less than 0 bits saved, using initial weights # After reading T0180.t2k-thin90.a2m.gz, have 118 columns in 1 chains # command:# Initializing Gain for EBGHTL # Initializing Gain for third_layer # Initializing Gain for second_layer # Initializing Gain for FirstLayer # Network initialization done # Printing prediction to T0180.t2k.dssp-ebghstl # command:# Network initialization done # Printing prediction in FASTA format to T0180.t2k.dssp-ebghstl.seq # command:# Network initialization done # Printing prediction to T0180.t2k.dssp-ebghstl.rdb # command:rm tmp.script /projects/compbio/experiments/models.97/scripts/2nd-rdb-to-sam-model -alphabet EBGHSTL T0180.t2k.dssp-ebghstl.rdb T0180.t2k.dssp-ebghstl.mod /projects/compbio/experiments/casp5/scripts-human/rasmol_color_from_2ry -pdb T0180.blank.pdb < T0180.t2k.dssp-ebghstl.seq > T0180.t2k.dssp-color.rasmol ln -sf T0180.t2k.dssp-color.rasmol dssp /projects/compbio/experiments/protein-predict/SAM_T02/scripts/add_summary_html \ "DSSP EBGHSTL structure prediction CASP format" \ file:/projects/compbio/experiments/casp5/t0180/t0180-double/T0180.t2k.dssp-ebghstl T0180.t2k.dssp-ebghstl >> /projects/compbio/experiments/casp5/t0180/t0180-double/summary.html /projects/compbio/experiments/protein-predict/SAM_T02/scripts/add_summary_html \ "DSSP EBGHSTL structure prediction RDB format" \ file:/projects/compbio/experiments/casp5/t0180/t0180-double/T0180.t2k.dssp-ebghstl.rdb T0180.t2k.dssp-ebghstl.rdb >> /projects/compbio/experiments/casp5/t0180/t0180-double/summary.html /projects/compbio/experiments/protein-predict/SAM_T02/scripts/add_summary_html \ "DSSP EBGHSTL structure prediction sequence format" \ file:/projects/compbio/experiments/casp5/t0180/t0180-double/T0180.t2k.dssp-ebghstl.seq T0180.t2k.dssp-ebghstl.seq >> /projects/compbio/experiments/casp5/t0180/t0180-double/summary.html echo ReadNeuralNet /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/predict_2nd/networks/t2k-5651-IDaaHr-5-15-7-15-9-15-13-ebghtl-stride-seeded.net > tmp.script echo ReadA2M T0180.t2k-thin90.a2m.gz >> tmp.script echo PrintPrediction T0180.t2k.stride-ebghtl >> tmp.script echo PrintPredictionFasta T0180.t2k.stride-ebghtl.seq >> tmp.script echo PrintRDB T0180.t2k.stride-ebghtl.rdb >> tmp.script /cse/faculty/karplus/dna/predict-2nd/predict-2nd < tmp.script # command:# Neural network set to t2k-5651-IDaaHr-5-15-7-15-9-15-13-ebghtl-seeded.net # command:# Reading A2M format from T0180.t2k-thin90.a2m.gz # Using SequenceWeight HenikoffWeight(-1, 1) # requested less than 0 bits saved, using initial weights # After reading T0180.t2k-thin90.a2m.gz, have 118 columns in 1 chains # command:# Initializing Gain for EBGHTL # Initializing Gain for third_layer # Initializing Gain for second_layer # Initializing Gain for FirstLayer # Network initialization done # Printing prediction to T0180.t2k.stride-ebghtl # command:# Network initialization done # Printing prediction in FASTA format to T0180.t2k.stride-ebghtl.seq # command:# Network initialization done # Printing prediction to T0180.t2k.stride-ebghtl.rdb # command:rm tmp.script /projects/compbio/experiments/models.97/scripts/2nd-rdb-to-sam-model -alphabet EBGHTL T0180.t2k.stride-ebghtl.rdb T0180.t2k.stride-ebghtl.mod /projects/compbio/experiments/casp5/scripts-human/rasmol_color_from_2ry -pdb T0180.blank.pdb < T0180.t2k.stride-ebghtl.seq > T0180.t2k.stride-color.rasmol ln -sf T0180.t2k.stride-color.rasmol stride /projects/compbio/experiments/protein-predict/SAM_T02/scripts/add_summary_html \ "Stride EBGHTL structure prediction CASP format" \ file:/projects/compbio/experiments/casp5/t0180/t0180-double/T0180.t2k.stride-ebghtl T0180.t2k.stride-ebghtl >> /projects/compbio/experiments/casp5/t0180/t0180-double/summary.html /projects/compbio/experiments/protein-predict/SAM_T02/scripts/add_summary_html \ "Stride EBGHTL structure prediction RDB format" \ file:/projects/compbio/experiments/casp5/t0180/t0180-double/T0180.t2k.stride-ebghtl.rdb T0180.t2k.stride-ebghtl.rdb >> /projects/compbio/experiments/casp5/t0180/t0180-double/summary.html /projects/compbio/experiments/protein-predict/SAM_T02/scripts/add_summary_html \ "Stride EBGHTL structure prediction sequence format" \ file:/projects/compbio/experiments/casp5/t0180/t0180-double/T0180.t2k.stride-ebghtl.seq T0180.t2k.stride-ebghtl.seq >> /projects/compbio/experiments/casp5/t0180/t0180-double/summary.html echo ReadAlphabet /projects/compbio/lib/alphabet/str.alphabet > tmp.script echo ReadNeuralNet /projects/compbio2/usr/karplus/predict-2nd/testing/str/networks/t2k-5651-IDaaHr-5-15-7-15-9-15-13-str-seeded.net >> tmp.script echo ReadA2M T0180.t2k-thin90.a2m.gz >> tmp.script echo PrintPrediction T0180.t2k.str >> tmp.script echo PrintPredictionFasta T0180.t2k.str.seq >> tmp.script echo PrintRDB T0180.t2k.str.rdb >> tmp.script /cse/faculty/karplus/dna/predict-2nd/predict-2nd < tmp.script # command:# Read 2 alphabets from /projects/compbio/lib/alphabet/str.alphabet # command:# Neural network set to t2k-5651-IDaaHr-5-15-7-15-9-15-13-str-seeded.net # command:# Reading A2M format from T0180.t2k-thin90.a2m.gz # Using SequenceWeight HenikoffWeight(-1, 1) # requested less than 0 bits saved, using initial weights # After reading T0180.t2k-thin90.a2m.gz, have 118 columns in 1 chains # command:# Initializing Gain for str # Initializing Gain for third_layer # Initializing Gain for second_layer # Initializing Gain for FirstLayer # Network initialization done # Printing prediction to T0180.t2k.str # command:# Network initialization done # Printing prediction in FASTA format to T0180.t2k.str.seq # command:# Network initialization done # Printing prediction to T0180.t2k.str.rdb # command:rm tmp.script /projects/compbio/experiments/models.97/scripts/2nd-rdb-to-sam-model -alphabet STR T0180.t2k.str.rdb T0180.t2k.str.mod /projects/compbio/experiments/casp5/scripts-human/rasmol_color_from_2ry -pdb T0180.blank.pdb < T0180.t2k.str.seq > T0180.t2k.str-color.rasmol ln -sf T0180.t2k.str-color.rasmol str /projects/compbio/experiments/protein-predict/SAM_T02/scripts/add_summary_html \ "Str structure prediction CASP format" \ file:/projects/compbio/experiments/casp5/t0180/t0180-double/T0180.t2k.str T0180.t2k.str >> /projects/compbio/experiments/casp5/t0180/t0180-double/summary.html /projects/compbio/experiments/protein-predict/SAM_T02/scripts/add_summary_html \ "Str structure prediction RDB format" \ file:/projects/compbio/experiments/casp5/t0180/t0180-double/T0180.t2k.str.rdb T0180.t2k.str.rdb >> /projects/compbio/experiments/casp5/t0180/t0180-double/summary.html /projects/compbio/experiments/protein-predict/SAM_T02/scripts/add_summary_html \ "Str structure prediction sequence format" \ file:/projects/compbio/experiments/casp5/t0180/t0180-double/T0180.t2k.str.seq T0180.t2k.str.seq >> /projects/compbio/experiments/casp5/t0180/t0180-double/summary.html echo ReadAlphabet /projects/compbio/lib/alphabet/alpha.alphabet > tmp.script echo ReadNeuralNet /projects/compbio2/usr/karplus/predict-2nd/testing/alpha/networks/t2k-5651-IDaaHr-5-15-7-15-9-15-13-alpha-seeded.net >> tmp.script echo ReadA2M T0180.t2k-thin90.a2m.gz >> tmp.script echo PrintPrediction T0180.t2k.alpha >> tmp.script echo PrintPredictionFasta T0180.t2k.alpha.seq >> tmp.script echo PrintRDB T0180.t2k.alpha.rdb >> tmp.script /cse/faculty/karplus/dna/predict-2nd/predict-2nd < tmp.script # command:# Read 3 alphabets from /projects/compbio/lib/alphabet/alpha.alphabet # command:# Neural network set to t2k-5651-IDaaHr-5-15-7-15-9-15-13-alpha-seeded.net # command:# Reading A2M format from T0180.t2k-thin90.a2m.gz # Using SequenceWeight HenikoffWeight(-1, 1) # requested less than 0 bits saved, using initial weights # After reading T0180.t2k-thin90.a2m.gz, have 118 columns in 1 chains # command:# Initializing Gain for alpha # Initializing Gain for third_layer # Initializing Gain for second_layer # Initializing Gain for FirstLayer # Network initialization done # Printing prediction to T0180.t2k.alpha # command:# Network initialization done # Printing prediction in FASTA format to T0180.t2k.alpha.seq # command:# Network initialization done # Printing prediction to T0180.t2k.alpha.rdb # command:rm tmp.script /projects/compbio/experiments/models.97/scripts/2nd-rdb-to-sam-model -alphabet ALPHA T0180.t2k.alpha.rdb T0180.t2k.alpha.mod /projects/compbio/experiments/casp5/scripts-human/rasmol_color_from_2ry -pdb T0180.blank.pdb < T0180.t2k.alpha.seq > T0180.t2k.alpha-color.rasmol ln -sf T0180.t2k.alpha-color.rasmol alpha /projects/compbio/experiments/protein-predict/SAM_T02/scripts/add_summary_html \ "Alpha angle prediction RDB format" \ file:/projects/compbio/experiments/casp5/t0180/t0180-double/T0180.t2k.alpha.rdb T0180.t2k.alpha.rdb >> /projects/compbio/experiments/casp5/t0180/t0180-double/summary.html /projects/compbio/experiments/protein-predict/SAM_T02/scripts/add_summary_html \ "Alpha angle prediction sequence format" \ file:/projects/compbio/experiments/casp5/t0180/t0180-double/T0180.t2k.alpha.seq T0180.t2k.alpha.seq >> /projects/compbio/experiments/casp5/t0180/t0180-double/summary.html /projects/compbio/experiments/protein-predict/SAM_T02/scripts/RDBCombine T0180.t2k.dssp-ebghstl.rdb T0180.t2k.stride-ebghtl.rdb T0180.t2k.str.rdb T0180.t2k.alpha.rdb -a 4069-6308-1312 > T0180.t2k.dssp_ehl2.rdb /projects/compbio/experiments/casp5/scripts-human/rdb2casp T0180.t2k.dssp_ehl2.rdb 4069-6308-1312 > T0180.t2k.dssp_ehl2 /projects/compbio/experiments/models.97/scripts/2nd-rdb-to-sam-model -alphabet EHL2 T0180.t2k.dssp_ehl2.rdb T0180.t2k.dssp_ehl2.mod /projects/compbio/experiments/protein-predict/SAM_T02/scripts/add_summary_html \ "DSSP 3-value prediction RDB format" \ file:/projects/compbio/experiments/casp5/t0180/t0180-double/T0180.t2k.dssp_ehl2.rdb T0180.t2k.dssp_ehl2.rdb >> /projects/compbio/experiments/casp5/t0180/t0180-double/summary.html /projects/compbio/experiments/protein-predict/SAM_T02/scripts/end_section_summary_html \ >> /projects/compbio/experiments/casp5/t0180/t0180-double/summary.html /projects/compbio/experiments/protein-predict/SAM_T02/scripts/add_section_head_summary_html \ "Sequence Logos" >> /projects/compbio/experiments/casp5/t0180/t0180-double/summary.html /projects/compbio/bin/i686/makelogo T0180.t2k.w0.5-logo -i T0180.t2k-w0.5.mod \ -logo_rel_entropy 1 \ -logo_bars_per_line 50 -logo_title "T0180.t2k w0.5" \ -logo_caption_f T0180.t2k.dssp-ebghstl.seq \ -logo_under_file T0180.a2m Reading parameter file T0180.t2k-w0.5.mod T0180.t2k-w0.5.mod(22): Reading MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-cc73-14880/tmp.a2m SAM: /projects/compbio/bin/i686/makelogo v3.3.2 (February, 2001) compiled 07/18/02_10:30:08 % Sequence-model (global) (SW = 0) /projects/compbio/experiments/protein-predict/SAM_T02/scripts/add_summary_html \ "SAM_T02 multiple alignment in sequence logo format" \ file:/projects/compbio/experiments/casp5/t0180/t0180-double/T0180.t2k.w0.5-logo.eps T0180.t2k.w0.5-logo.eps >> /projects/compbio/experiments/casp5/t0180/t0180-double/summary.html /projects/compbio/bin/i686/makelogo T0180.t2k.dssp-ebghstl-logo -i T0180.t2k.dssp-ebghstl.mod \ -logo_rel_entropy 1 \ -logo_bars_per_line 50 -logo_title "T0180.t2k EBGHSTL" \ -logo_caption_f T0180.t2k.dssp-ebghstl.seq \ -logo_under_file T0180.a2m \ -logo_color_file /projects/compbio/lib/stride.colors Reading parameter file T0180.t2k.dssp-ebghstl.mod T0180.t2k.dssp-ebghstl.mod(3): Reading MODEL -- Model from 2nd structure file T0180.t2k.dssp-ebghstl.rdb SAM: /projects/compbio/bin/i686/makelogo v3.3.2 (February, 2001) compiled 07/18/02_10:30:08 % Sequence-model (global) (SW = 0) /projects/compbio/experiments/protein-predict/SAM_T02/scripts/add_summary_html \ "DSSP EBGHSTL structure prediction in sequence logo format" \ file:/projects/compbio/experiments/casp5/t0180/t0180-double/T0180.t2k.dssp-ebghstl-logo.eps T0180.t2k.dssp-ebghstl-logo.eps >> /projects/compbio/experiments/casp5/t0180/t0180-double/summary.html /projects/compbio/bin/i686/makelogo T0180.t2k.stride-ebghtl-logo -i T0180.t2k.stride-ebghtl.mod \ -logo_rel_entropy 1 \ -logo_bars_per_line 50 -logo_title "T0180.t2k EBGHTL" \ -logo_caption_f T0180.t2k.stride-ebghtl.seq \ -logo_under_file T0180.a2m \ -logo_color_file /projects/compbio/lib/stride.colors Reading parameter file T0180.t2k.stride-ebghtl.mod T0180.t2k.stride-ebghtl.mod(3): Reading MODEL -- Model from 2nd structure file T0180.t2k.stride-ebghtl.rdb SAM: /projects/compbio/bin/i686/makelogo v3.3.2 (February, 2001) compiled 07/18/02_10:30:08 % Sequence-model (global) (SW = 0) /projects/compbio/experiments/protein-predict/SAM_T02/scripts/add_summary_html \ "Stride EBGHTL structure prediction in sequence logo format" \ file:/projects/compbio/experiments/casp5/t0180/t0180-double/T0180.t2k.stride-ebghtl-logo.eps T0180.t2k.stride-ebghtl-logo.eps >> /projects/compbio/experiments/casp5/t0180/t0180-double/summary.html /projects/compbio/bin/i686/makelogo T0180.t2k.str-logo -i T0180.t2k.str.mod \ -logo_rel_entropy 1 \ -logo_bars_per_line 50 \ -logo_title "T0180.t2k STR" \ -logo_caption_f T0180.t2k.str.seq \ -logo_under_file T0180.a2m \ -logo_color_file /projects/compbio/lib/str.colors Reading parameter file T0180.t2k.str.mod T0180.t2k.str.mod(3): Reading MODEL -- Model from 2nd structure file T0180.t2k.str.rdb SAM: /projects/compbio/bin/i686/makelogo v3.3.2 (February, 2001) compiled 07/18/02_10:30:08 % Sequence-model (global) (SW = 0) /projects/compbio/experiments/protein-predict/SAM_T02/scripts/add_summary_html \ "Str structure prediction in sequence logo format" \ file:/projects/compbio/experiments/casp5/t0180/t0180-double/T0180.t2k.str-logo.eps T0180.t2k.str-logo.eps >> /projects/compbio/experiments/casp5/t0180/t0180-double/summary.html /projects/compbio/bin/i686/makelogo T0180.t2k.alpha-logo -i T0180.t2k.alpha.mod \ -logo_rel_entropy 1 \ -logo_bars_per_line 50 -logo_title "T0180.t2k ALPHA" \ -logo_caption_f T0180.t2k.alpha.seq \ -logo_under_file T0180.a2m \ -logo_color_file /projects/compbio/lib/alpha.colors Reading parameter file T0180.t2k.alpha.mod T0180.t2k.alpha.mod(3): Reading MODEL -- Model from 2nd structure file T0180.t2k.alpha.rdb SAM: /projects/compbio/bin/i686/makelogo v3.3.2 (February, 2001) compiled 07/18/02_10:30:08 % Sequence-model (global) (SW = 0) /projects/compbio/experiments/protein-predict/SAM_T02/scripts/add_summary_html \ "Alpha angle prediction in sequence logo format" \ file:/projects/compbio/experiments/casp5/t0180/t0180-double/T0180.t2k.alpha-logo.eps T0180.t2k.alpha-logo.eps >> /projects/compbio/experiments/casp5/t0180/t0180-double/summary.html /projects/compbio/bin/i686/makelogo T0180.t2k.dssp_ehl2-logo -i T0180.t2k.dssp_ehl2.mod \ -logo_rel_entropy 1 \ -logo_bars_per_line 50 -logo_title "T0180.t2k DSSP_EHL2" \ -logo_caption_f T0180.t2k.dssp-ebghstl.seq \ -logo_under_file T0180.a2m \ -logo_color_file /projects/compbio/lib/dssp.colors Reading parameter file T0180.t2k.dssp_ehl2.mod T0180.t2k.dssp_ehl2.mod(3): Reading MODEL -- Model from 2nd structure file T0180.t2k.dssp_ehl2.rdb SAM: /projects/compbio/bin/i686/makelogo v3.3.2 (February, 2001) compiled 07/18/02_10:30:08 % Sequence-model (global) (SW = 0) /projects/compbio/experiments/protein-predict/SAM_T02/scripts/add_summary_html \ "DSSP 3-value prediction in sequence logo format" \ file:/projects/compbio/experiments/casp5/t0180/t0180-double/T0180.t2k.dssp_ehl2-logo.eps T0180.t2k.dssp_ehl2-logo.eps >> /projects/compbio/experiments/casp5/t0180/t0180-double/summary.html /projects/compbio/experiments/protein-predict/SAM_T02/scripts/end_section_summary_html \ >> /projects/compbio/experiments/casp5/t0180/t0180-double/summary.html /projects/compbio/experiments/protein-predict/SAM_T02/scripts/add_section_head_summary_html \ "Target model scores" >> /projects/compbio/experiments/casp5/t0180/t0180-double/summary.html /projects/compbio/bin/i686/hmmscore T0180.t2k-100-30-str \ -calibrate 1 \ -alphabet protein,STR \ -trackmod T0180.t2k-w0.5.mod,T0180.t2k.str.mod \ -db /projects/compbio/experiments/models.97/indexes/t2k.x-seqs,/projects/compbio/experiments/models.97/indexes/t2k.strs \ -trackcoeff 1.0,0.3 \ -sw 2 -dpstyle 0 -subtract_null 4 \ -select_score 0 SAM: /projects/compbio/bin/i686/hmmscore v3.3.2 (February, 2001) compiled 06/24/02_10:50:12 Creating calibrated model library T0180.t2k-100-30-str.mlib (calibrate = 1). Scoring model T0180.t2k-100-30-str T0180.t2k-w0.5.mod(1477): Reading track 0 model from MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-cc73-14880/tmp.a2m T0180.t2k.str.mod(737): Reading track 1 model from MODEL -- Model from 2nd structure file T0180.t2k.str.rdb Calibrating to sequence database. Calculating Distances (. = 1000 sequences) Model T0180.t2k-100-30-str calibrated to tau=0.8388 and lambda=1.6863 . Average NLL-Simple NULL score: -20.057138 Database has 6517 sequences with 1547120 residues. rm -f T0180.t2k-100-30-str.dist /projects/compbio/bin/i686/hmmscore strfoo \ -modellibrary T0180.t2k-100-30-str.mlib \ -db /projects/compbio/experiments/models.97/indexes/t2k.x-seqs,/projects/compbio/experiments/models.97/indexes/t2k.strs \ -db_size 6014 \ -select_score 4 -Emax 40. SAM: /projects/compbio/bin/i686/hmmscore v3.3.2 (February, 2001) compiled 06/24/02_10:50:12 Scoring model T0180.t2k-100-30-str (T0180.t2k-100-30-str model number 1) T0180.t2k-w0.5.mod(1477): Reading track 0 model from MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-cc73-14880/tmp.a2m T0180.t2k.str.mod(737): Reading track 1 model from MODEL -- Model from 2nd structure file T0180.t2k.str.rdb Calculating Distances (. = 1000 sequences) ....... Average NLL-Simple NULL score: -20.057138 Database has 6517 sequences with 1547120 residues. mv -f strfoo.1.T0180.t2k-100-30-str.dist T0180.t2k-100-30-str.dist /projects/compbio/bin/i686/hmmscore T0180.t2k-100-30-dssp-ebghstl \ -calibrate 1 \ -alphabet protein,EBGHSTL \ -trackmod T0180.t2k-w0.5.mod,T0180.t2k.dssp-ebghstl.mod \ -db /projects/compbio/experiments/models.97/indexes/t2k.x-seqs,/projects/compbio/experiments/models.97/indexes/t2k.dssps \ -trackcoeff 1.0,0.3 \ -sw 2 -dpstyle 0 -subtract_null 4 \ -select_score 0 SAM: /projects/compbio/bin/i686/hmmscore v3.3.2 (February, 2001) compiled 06/24/02_10:50:12 Creating calibrated model library T0180.t2k-100-30-dssp-ebghstl.mlib (calibrate = 1). Scoring model T0180.t2k-100-30-dssp-ebghstl T0180.t2k-w0.5.mod(1477): Reading track 0 model from MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-cc73-14880/tmp.a2m T0180.t2k.dssp-ebghstl.mod(737): Reading track 1 model from MODEL -- Model from 2nd structure file T0180.t2k.dssp-ebghstl.rdb Calibrating to sequence database. Calculating Distances (. = 1000 sequences) Model T0180.t2k-100-30-dssp-ebghstl calibrated to tau=0.8476 and lambda=1.6421 . Average NLL-Simple NULL score: -20.046637 Database has 6517 sequences with 1547120 residues. rm -f T0180.t2k-100-30-dssp-ebghstl.dist /projects/compbio/bin/i686/hmmscore dsspfoo \ -modellibrary T0180.t2k-100-30-dssp-ebghstl.mlib \ -db /projects/compbio/experiments/models.97/indexes/t2k.x-seqs,/projects/compbio/experiments/models.97/indexes/t2k.dssps \ -db_size 6014 \ -select_score 4 -Emax 40. SAM: /projects/compbio/bin/i686/hmmscore v3.3.2 (February, 2001) compiled 06/24/02_10:50:12 Scoring model T0180.t2k-100-30-dssp-ebghstl (T0180.t2k-100-30-dssp-ebghstl model number 1) T0180.t2k-w0.5.mod(1477): Reading track 0 model from MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-cc73-14880/tmp.a2m T0180.t2k.dssp-ebghstl.mod(737): Reading track 1 model from MODEL -- Model from 2nd structure file T0180.t2k.dssp-ebghstl.rdb Calculating Distances (. = 1000 sequences) ....... Average NLL-Simple NULL score: -20.046638 Database has 6517 sequences with 1547120 residues. mv -f dsspfoo.1.T0180.t2k-100-30-dssp-ebghstl.dist T0180.t2k-100-30-dssp-ebghstl.dist /projects/compbio/bin/i686/hmmscore T0180.t2k-100-30-stride-ebghtl \ -calibrate 1 \ -alphabet protein,EBGHTL \ -trackmod T0180.t2k-w0.5.mod,T0180.t2k.stride-ebghtl.mod \ -db /projects/compbio/experiments/models.97/indexes/t2k.x-seqs,/projects/compbio/experiments/models.97/indexes/t2k.2ds \ -trackcoeff 1.0,0.3 \ -sw 2 -dpstyle 0 -subtract_null 4 \ -select_score 0 SAM: /projects/compbio/bin/i686/hmmscore v3.3.2 (February, 2001) compiled 06/24/02_10:50:12 Creating calibrated model library T0180.t2k-100-30-stride-ebghtl.mlib (calibrate = 1). Scoring model T0180.t2k-100-30-stride-ebghtl T0180.t2k-w0.5.mod(1477): Reading track 0 model from MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-cc73-14880/tmp.a2m T0180.t2k.stride-ebghtl.mod(737): Reading track 1 model from MODEL -- Model from 2nd structure file T0180.t2k.stride-ebghtl.rdb Calibrating to sequence database. Calculating Distances (. = 1000 sequences) Model T0180.t2k-100-30-stride-ebghtl calibrated to tau=0.8556 and lambda=1.4694 . Average NLL-Simple NULL score: -20.170612 Database has 6517 sequences with 1547120 residues. rm -f T0180.t2k-100-30-stride-ebghtl.dist /projects/compbio/bin/i686/hmmscore stridefoo \ -modellibrary T0180.t2k-100-30-stride-ebghtl.mlib \ -db /projects/compbio/experiments/models.97/indexes/t2k.x-seqs,/projects/compbio/experiments/models.97/indexes/t2k.2ds \ -db_size 6014 \ -select_score 4 -Emax 40. SAM: /projects/compbio/bin/i686/hmmscore v3.3.2 (February, 2001) compiled 06/24/02_10:50:12 Scoring model T0180.t2k-100-30-stride-ebghtl (T0180.t2k-100-30-stride-ebghtl model number 1) T0180.t2k-w0.5.mod(1477): Reading track 0 model from MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-cc73-14880/tmp.a2m T0180.t2k.stride-ebghtl.mod(737): Reading track 1 model from MODEL -- Model from 2nd structure file T0180.t2k.stride-ebghtl.rdb Calculating Distances (. = 1000 sequences) ....... Average NLL-Simple NULL score: -20.170612 Database has 6517 sequences with 1547120 residues. mv -f stridefoo.1.T0180.t2k-100-30-stride-ebghtl.dist T0180.t2k-100-30-stride-ebghtl.dist /projects/compbio/bin/i686/hmmscore T0180.t2k-100-30-alpha \ -calibrate 1 \ -alphabet protein,ALPHA \ -trackmod T0180.t2k-w0.5.mod,T0180.t2k.alpha.mod \ -db /projects/compbio/experiments/models.97/indexes/t2k.x-seqs,/projects/compbio/experiments/models.97/indexes/t2k.alphas \ -trackcoeff 1.0,0.3 \ -sw 2 -dpstyle 0 -subtract_null 4 \ -select_score 0 SAM: /projects/compbio/bin/i686/hmmscore v3.3.2 (February, 2001) compiled 06/24/02_10:50:12 Creating calibrated model library T0180.t2k-100-30-alpha.mlib (calibrate = 1). Scoring model T0180.t2k-100-30-alpha T0180.t2k-w0.5.mod(1477): Reading track 0 model from MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-cc73-14880/tmp.a2m T0180.t2k.alpha.mod(737): Reading track 1 model from MODEL -- Model from 2nd structure file T0180.t2k.alpha.rdb Calibrating to sequence database. Calculating Distances (. = 1000 sequences) Model T0180.t2k-100-30-alpha calibrated to tau=0.7346 and lambda=2.6503 . Average NLL-Simple NULL score: -19.441500 Database has 6517 sequences with 1547120 residues. rm -f T0180.t2k-100-30-alpha.dist /projects/compbio/bin/i686/hmmscore alphafoo \ -modellibrary T0180.t2k-100-30-alpha.mlib \ -db /projects/compbio/experiments/models.97/indexes/t2k.x-seqs,/projects/compbio/experiments/models.97/indexes/t2k.alphas \ -db_size 6014 \ -select_score 4 -Emax 40. SAM: /projects/compbio/bin/i686/hmmscore v3.3.2 (February, 2001) compiled 06/24/02_10:50:12 Scoring model T0180.t2k-100-30-alpha (T0180.t2k-100-30-alpha model number 1) T0180.t2k-w0.5.mod(1477): Reading track 0 model from MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-cc73-14880/tmp.a2m T0180.t2k.alpha.mod(737): Reading track 1 model from MODEL -- Model from 2nd structure file T0180.t2k.alpha.rdb Calculating Distances (. = 1000 sequences) ....... Average NLL-Simple NULL score: -19.441498 Database has 6517 sequences with 1547120 residues. mv -f alphafoo.1.T0180.t2k-100-30-alpha.dist T0180.t2k-100-30-alpha.dist /projects/compbio/bin/i686/hmmscore T0180.t2k-100-30-dssp_ehl2 \ -calibrate 1 \ -alphabet protein,EHL2 \ -trackmod T0180.t2k-w0.5.mod,T0180.t2k.dssp_ehl2.mod \ -db /projects/compbio/experiments/models.97/indexes/t2k.x-seqs,/projects/compbio/experiments/models.97/indexes/t2k.dssps \ -trackcoeff 1.0,0.3 \ -sw 2 -dpstyle 0 -subtract_null 4 \ -select_score 0 SAM: /projects/compbio/bin/i686/hmmscore v3.3.2 (February, 2001) compiled 06/24/02_10:50:12 Creating calibrated model library T0180.t2k-100-30-dssp_ehl2.mlib (calibrate = 1). Scoring model T0180.t2k-100-30-dssp_ehl2 T0180.t2k-w0.5.mod(1477): Reading track 0 model from MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-cc73-14880/tmp.a2m T0180.t2k.dssp_ehl2.mod(737): Reading track 1 model from MODEL -- Model from 2nd structure file T0180.t2k.dssp_ehl2.rdb Calibrating to sequence database. Calculating Distances (. = 1000 sequences) Model T0180.t2k-100-30-dssp_ehl2 calibrated to tau=0.8279 and lambda=1.7215 . Average NLL-Simple NULL score: -19.978251 Database has 6517 sequences with 1547120 residues. rm -f T0180.t2k-100-30-dssp_ehl2.dist /projects/compbio/bin/i686/hmmscore dssp_ehl2foo \ -modellibrary T0180.t2k-100-30-dssp_ehl2.mlib \ -db /projects/compbio/experiments/models.97/indexes/t2k.x-seqs,/projects/compbio/experiments/models.97/indexes/t2k.dssps \ -db_size 6014 \ -select_score 4 -Emax 40. SAM: /projects/compbio/bin/i686/hmmscore v3.3.2 (February, 2001) compiled 06/24/02_10:50:12 Scoring model T0180.t2k-100-30-dssp_ehl2 (T0180.t2k-100-30-dssp_ehl2 model number 1) T0180.t2k-w0.5.mod(1477): Reading track 0 model from MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-cc73-14880/tmp.a2m T0180.t2k.dssp_ehl2.mod(737): Reading track 1 model from MODEL -- Model from 2nd structure file T0180.t2k.dssp_ehl2.rdb Calculating Distances (. = 1000 sequences) ....... Average NLL-Simple NULL score: -19.978252 Database has 6517 sequences with 1547120 residues. mv -f dssp_ehl2foo.1.T0180.t2k-100-30-dssp_ehl2.dist T0180.t2k-100-30-dssp_ehl2.dist /projects/compbio/experiments/protein-predict/SAM_T02/scripts/annotate_target_scores t2k-100-30-dssp-ebghstl < T0180.t2k-100-30-dssp-ebghstl.dist > T0180.t2k-100-30-dssp-ebghstl-scores.rdb /projects/compbio/experiments/protein-predict/SAM_T02/scripts/oneway_hits_rdb2html T0180.t2k-100-30-dssp-ebghstl-scores < T0180.t2k-100-30-dssp-ebghstl-scores.rdb > T0180.t2k-100-30-dssp-ebghstl-scores.html /projects/compbio/experiments/protein-predict/SAM_T02/scripts/add_summary_html \ "Annotated amino acid/100-30-dssp-ebghstl two-track target model scores" \ file:/projects/compbio/experiments/casp5/t0180/t0180-double/T0180.t2k-100-30-dssp-ebghstl-scores.html \ T0180.t2k-100-30-dssp-ebghstl-scores.html >> /projects/compbio/experiments/casp5/t0180/t0180-double/summary.html /projects/compbio/experiments/protein-predict/SAM_T02/scripts/annotate_target_scores t2k-100-30-stride-ebghtl < T0180.t2k-100-30-stride-ebghtl.dist > T0180.t2k-100-30-stride-ebghtl-scores.rdb /projects/compbio/experiments/protein-predict/SAM_T02/scripts/oneway_hits_rdb2html T0180.t2k-100-30-stride-ebghtl-scores < T0180.t2k-100-30-stride-ebghtl-scores.rdb > T0180.t2k-100-30-stride-ebghtl-scores.html /projects/compbio/experiments/protein-predict/SAM_T02/scripts/add_summary_html \ "Annotated amino acid/100-30-stride-ebghtl two-track target model scores" \ file:/projects/compbio/experiments/casp5/t0180/t0180-double/T0180.t2k-100-30-stride-ebghtl-scores.html \ T0180.t2k-100-30-stride-ebghtl-scores.html >> /projects/compbio/experiments/casp5/t0180/t0180-double/summary.html /projects/compbio/experiments/protein-predict/SAM_T02/scripts/annotate_target_scores t2k-100-30-str < T0180.t2k-100-30-str.dist > T0180.t2k-100-30-str-scores.rdb /projects/compbio/experiments/protein-predict/SAM_T02/scripts/oneway_hits_rdb2html T0180.t2k-100-30-str-scores < T0180.t2k-100-30-str-scores.rdb > T0180.t2k-100-30-str-scores.html /projects/compbio/experiments/protein-predict/SAM_T02/scripts/add_summary_html \ "Annotated amino acid/100-30-str two-track target model scores" \ file:/projects/compbio/experiments/casp5/t0180/t0180-double/T0180.t2k-100-30-str-scores.html \ T0180.t2k-100-30-str-scores.html >> /projects/compbio/experiments/casp5/t0180/t0180-double/summary.html /projects/compbio/experiments/protein-predict/SAM_T02/scripts/annotate_target_scores t2k-100-30-alpha < T0180.t2k-100-30-alpha.dist > T0180.t2k-100-30-alpha-scores.rdb /projects/compbio/experiments/protein-predict/SAM_T02/scripts/oneway_hits_rdb2html T0180.t2k-100-30-alpha-scores < T0180.t2k-100-30-alpha-scores.rdb > T0180.t2k-100-30-alpha-scores.html /projects/compbio/experiments/protein-predict/SAM_T02/scripts/add_summary_html \ "Annotated amino acid/100-30-alpha two-track target model scores" \ file:/projects/compbio/experiments/casp5/t0180/t0180-double/T0180.t2k-100-30-alpha-scores.html \ T0180.t2k-100-30-alpha-scores.html >> /projects/compbio/experiments/casp5/t0180/t0180-double/summary.html /projects/compbio/experiments/protein-predict/SAM_T02/scripts/annotate_target_scores t2k-100-30-dssp_ehl2 < T0180.t2k-100-30-dssp_ehl2.dist > T0180.t2k-100-30-dssp_ehl2-scores.rdb /projects/compbio/experiments/protein-predict/SAM_T02/scripts/oneway_hits_rdb2html T0180.t2k-100-30-dssp_ehl2-scores < T0180.t2k-100-30-dssp_ehl2-scores.rdb > T0180.t2k-100-30-dssp_ehl2-scores.html /projects/compbio/experiments/protein-predict/SAM_T02/scripts/add_summary_html \ "Annotated amino acid/100-30-dssp_ehl2 two-track target model scores" \ file:/projects/compbio/experiments/casp5/t0180/t0180-double/T0180.t2k-100-30-dssp_ehl2-scores.html \ T0180.t2k-100-30-dssp_ehl2-scores.html >> /projects/compbio/experiments/casp5/t0180/t0180-double/summary.html /projects/compbio/bin/i686/hmmscore T0180.t2k-w0.5 \ -calibrate 1 \ -i T0180.t2k-w0.5.mod \ -db /projects/compbio/experiments/models.97/indexes/t2k.x-seqs \ -sw 2 -dpstyle 0 -subtract_null 4 \ -select_score 0 Reading parameter file T0180.t2k-w0.5.mod T0180.t2k-w0.5.mod(22): Reading MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-cc73-14880/tmp.a2m SAM: /projects/compbio/bin/i686/hmmscore v3.3.2 (February, 2001) compiled 06/24/02_10:50:12 Creating calibrated model library T0180.t2k-w0.5.mlib (calibrate = 1). Scoring model T0180.t2k-w0.5.mod Calibrating to sequence database. Calculating Distances (. = 1000 sequences) Model T0180.t2k-w0.5.mod calibrated to tau=0.7627 and lambda=3.2320 . Average NLL-Simple NULL score: -19.087132 Database has 6517 sequences with 1547120 residues. rm -f T0180.t2k-w0.5.dist /projects/compbio/bin/i686/hmmscore w0.5foo \ -modellibrary T0180.t2k-w0.5.mlib \ -db /projects/compbio/experiments/protein-predict/SAM_T02/data/pdbaa \ -dbsize 6014 \ -select_score 4 -Emax 40. SAM: /projects/compbio/bin/i686/hmmscore v3.3.2 (February, 2001) compiled 06/24/02_10:50:12 Reading parameter file T0180.t2k-w0.5.mod T0180.t2k-w0.5.mod(22): Reading MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-cc73-14880/tmp.a2m Scoring model T0180.t2k-w0.5.mod (T0180.t2k-w0.5 model number 1) Calculating Distances (. = 1000 sequences) .............. Average NLL-Simple NULL score: -18.744904 Database has 13568 sequences with 3010108 residues. mv -f w0.5foo.1.T0180.t2k-w0.5.mod.dist T0180.t2k-w0.5.dist /projects/compbio/experiments/protein-predict/SAM_T02/scripts/annotate_target_scores t2k-w0.5 < T0180.t2k-w0.5.dist > T0180.t2k-w0.5-scores.rdb /projects/compbio/experiments/protein-predict/SAM_T02/scripts/oneway_hits_rdb2html T0180.t2k-w0.5-scores < T0180.t2k-w0.5-scores.rdb > T0180.t2k-w0.5-scores.html /projects/compbio/experiments/protein-predict/SAM_T02/scripts/add_summary_html \ "Annotated amino acid single-track target model scores of PDB" \ file:/projects/compbio/experiments/casp5/t0180/t0180-double/T0180.t2k-w0.5-scores.html \ T0180.t2k-w0.5-scores.html >> /projects/compbio/experiments/casp5/t0180/t0180-double/summary.html /projects/compbio/experiments/protein-predict/SAM_T02/scripts/end_section_summary_html \ >> /projects/compbio/experiments/casp5/t0180/t0180-double/summary.html /projects/compbio/experiments/protein-predict/SAM_T02/scripts/add_section_head_summary_html \ "Template model scores" >> /projects/compbio/experiments/casp5/t0180/t0180-double/summary.html /projects/compbio/bin/i686/hmmscore.new T0180.template-lib -modellibrary /projects/compbio/experiments/models.97/indexes/t2k-w0.5-db.mlib \ -db_size 6014 \ -db T0180.a2m -rdb 1 \ -select_score 4 -Emax 40 SAM: /projects/compbio/bin/i686/hmmscore.new v3.3.2 (February, 2001) compiled 07/30/02_10:12:06 Found found modlib 1 /projects/compbio/experiments/models.97/indexes/t2k-w0.5-db.mlib Opening T0180.template-lib.dist-rdb for RDB distance output /projects/compbio/experiments/models.97/pdb/1k/1kwfA/nostruct-align/1kwfA.t2k-w0.5.mod(22): Reading nostruct-align/1kwfA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc69-22568/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1k/1kwfA/nostruct-align/1kwfA.t2k-w0.5.mod (nostruct-align/1kwfA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Track 0 FIMs added (geometric mean of match probabilities (6)) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1k/1kwfA/nostruct-align/1kwfA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.898672 /projects/compbio/experiments/models.97/pdb/1q/1qgrA/nostruct-align/1qgrA.t2k-w0.5.mod(21): Reading nostruct-align/1qgrA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc84-30082/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1q/1qgrA/nostruct-align/1qgrA.t2k-w0.5.mod (nostruct-align/1qgrA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1q/1qgrA/nostruct-align/1qgrA.t2k-w0.5.mod . Average NLL-Simple NULL score: -24.553682 /projects/compbio/experiments/models.97/pdb/2p/2pil/nostruct-align/2pil.t2k-w0.5.mod(22): Reading nostruct-align/2pil.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc50-26804/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/2p/2pil/nostruct-align/2pil.t2k-w0.5.mod (nostruct-align/2pil.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/2p/2pil/nostruct-align/2pil.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.447681 /projects/compbio/experiments/models.97/pdb/1q/1qgrB/nostruct-align/1qgrB.t2k-w0.5.mod(22): Reading nostruct-align/1qgrB.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc25-12173/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1q/1qgrB/nostruct-align/1qgrB.t2k-w0.5.mod (nostruct-align/1qgrB.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1q/1qgrB/nostruct-align/1qgrB.t2k-w0.5.mod . Average NLL-Simple NULL score: -15.530689 /projects/compbio/experiments/models.97/pdb/1d/1dtyA/nostruct-align/1dtyA.t2k-w0.5.mod(21): Reading nostruct-align/1dtyA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc85-3231/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1d/1dtyA/nostruct-align/1dtyA.t2k-w0.5.mod (nostruct-align/1dtyA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1d/1dtyA/nostruct-align/1dtyA.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.351688 /projects/compbio/experiments/models.97/pdb/1a/1aquA/nostruct-align/1aquA.t2k-w0.5.mod(22): Reading nostruct-align/1aquA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc59-8518/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1a/1aquA/nostruct-align/1aquA.t2k-w0.5.mod (nostruct-align/1aquA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1a/1aquA/nostruct-align/1aquA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.883690 /projects/compbio/experiments/models.97/pdb/1v/1vcaA/nostruct-align/1vcaA.t2k-w0.5.mod(22): Reading nostruct-align/1vcaA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc61-6947/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1v/1vcaA/nostruct-align/1vcaA.t2k-w0.5.mod (nostruct-align/1vcaA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1v/1vcaA/nostruct-align/1vcaA.t2k-w0.5.mod . Average NLL-Simple NULL score: -23.773693 /projects/compbio/experiments/models.97/pdb/1b/1bo9A/nostruct-align/1bo9A.t2k-w0.5.mod(21): Reading nostruct-align/1bo9A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc58-13825/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1b/1bo9A/nostruct-align/1bo9A.t2k-w0.5.mod (nostruct-align/1bo9A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1b/1bo9A/nostruct-align/1bo9A.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.724689 /projects/compbio/experiments/models.97/pdb/3h/3hhrB/nostruct-align/3hhrB.t2k-w0.5.mod(21): Reading nostruct-align/3hhrB.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc57-11870/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/3h/3hhrB/nostruct-align/3hhrB.t2k-w0.5.mod (nostruct-align/3hhrB.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/3h/3hhrB/nostruct-align/3hhrB.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.733688 /projects/compbio/experiments/models.97/pdb/1j/1jlnA/nostruct-align/1jlnA.t2k-w0.5.mod(22): Reading nostruct-align/1jlnA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc42-3352/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1j/1jlnA/nostruct-align/1jlnA.t2k-w0.5.mod (nostruct-align/1jlnA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1j/1jlnA/nostruct-align/1jlnA.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.338671 /projects/compbio/experiments/models.97/pdb/1j/1j9lA/nostruct-align/1j9lA.t2k-w0.5.mod(22): Reading nostruct-align/1j9lA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc59-762/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1j/1j9lA/nostruct-align/1j9lA.t2k-w0.5.mod (nostruct-align/1j9lA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1j/1j9lA/nostruct-align/1j9lA.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.835690 /projects/compbio/experiments/models.97/pdb/1g/1g6hA/nostruct-align/1g6hA.t2k-w0.5.mod(22): Reading nostruct-align/1g6hA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc75-10089/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1g/1g6hA/nostruct-align/1g6hA.t2k-w0.5.mod (nostruct-align/1g6hA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1g/1g6hA/nostruct-align/1g6hA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.464699 /projects/compbio/experiments/models.97/pdb/1k/1k5rA/nostruct-align/1k5rA.t2k-w0.5.mod(22): Reading nostruct-align/1k5rA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc54-3416/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1k/1k5rA/nostruct-align/1k5rA.t2k-w0.5.mod (nostruct-align/1k5rA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1k/1k5rA/nostruct-align/1k5rA.t2k-w0.5.mod . Average NLL-Simple NULL score: -15.729680 /projects/compbio/experiments/models.97/pdb/1b/1budA/nostruct-align/1budA.t2k-w0.5.mod(21): Reading nostruct-align/1budA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc36-12775/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1b/1budA/nostruct-align/1budA.t2k-w0.5.mod (nostruct-align/1budA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1b/1budA/nostruct-align/1budA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.711681 /projects/compbio/experiments/models.97/pdb/5l/5ldh/nostruct-align/5ldh.t2k-w0.5.mod(21): Reading nostruct-align/5ldh.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc35-12387/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/5l/5ldh/nostruct-align/5ldh.t2k-w0.5.mod (nostruct-align/5ldh.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/5l/5ldh/nostruct-align/5ldh.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.047693 /projects/compbio/experiments/models.97/pdb/1j/1jsxA/nostruct-align/1jsxA.t2k-w0.5.mod(22): Reading nostruct-align/1jsxA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc73-5753/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1j/1jsxA/nostruct-align/1jsxA.t2k-w0.5.mod (nostruct-align/1jsxA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1j/1jsxA/nostruct-align/1jsxA.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.985685 /projects/compbio/experiments/models.97/pdb/8o/8ohm/nostruct-align/8ohm.t2k-w0.5.mod(21): Reading nostruct-align/8ohm.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc65-18237/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/8o/8ohm/nostruct-align/8ohm.t2k-w0.5.mod (nostruct-align/8ohm.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/8o/8ohm/nostruct-align/8ohm.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.797691 /projects/compbio/experiments/models.97/pdb/1e/1eblA/nostruct-align/1eblA.t2k-w0.5.mod(22): Reading nostruct-align/1eblA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc48-21711/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1eblA/nostruct-align/1eblA.t2k-w0.5.mod (nostruct-align/1eblA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1eblA/nostruct-align/1eblA.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.984688 /projects/compbio/experiments/models.97/pdb/1e/1eblB/nostruct-align/1eblB.t2k-w0.5.mod(22): Reading nostruct-align/1eblB.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc28-22698/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1eblB/nostruct-align/1eblB.t2k-w0.5.mod (nostruct-align/1eblB.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1eblB/nostruct-align/1eblB.t2k-w0.5.mod . Average NLL-Simple NULL score: -22.052670 /projects/compbio/experiments/models.97/pdb/1g/1gr2A/nostruct-align/1gr2A.t2k-w0.5.mod(21): Reading nostruct-align/1gr2A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc88-8125/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1g/1gr2A/nostruct-align/1gr2A.t2k-w0.5.mod (nostruct-align/1gr2A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1g/1gr2A/nostruct-align/1gr2A.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.440693 /projects/compbio/experiments/models.97/pdb/1t/1tdj/nostruct-align/1tdj.t2k-w0.5.mod(21): Reading nostruct-align/1tdj.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc60-21682/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1t/1tdj/nostruct-align/1tdj.t2k-w0.5.mod (nostruct-align/1tdj.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1t/1tdj/nostruct-align/1tdj.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.517685 /projects/compbio/experiments/models.97/pdb/1e/1ek4A/nostruct-align/1ek4A.t2k-w0.5.mod(21): Reading nostruct-align/1ek4A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc06-21182/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1ek4A/nostruct-align/1ek4A.t2k-w0.5.mod (nostruct-align/1ek4A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1ek4A/nostruct-align/1ek4A.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.550697 /projects/compbio/experiments/models.97/pdb/1f/1f48A/nostruct-align/1f48A.t2k-w0.5.mod(21): Reading nostruct-align/1f48A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc32-17689/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1f48A/nostruct-align/1f48A.t2k-w0.5.mod (nostruct-align/1f48A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1f48A/nostruct-align/1f48A.t2k-w0.5.mod . Average NLL-Simple NULL score: -23.821695 /projects/compbio/experiments/models.97/pdb/1n/1ndoA/nostruct-align/1ndoA.t2k-w0.5.mod(21): Reading nostruct-align/1ndoA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc70-22301/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1n/1ndoA/nostruct-align/1ndoA.t2k-w0.5.mod (nostruct-align/1ndoA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1n/1ndoA/nostruct-align/1ndoA.t2k-w0.5.mod . Average NLL-Simple NULL score: -25.236685 /projects/compbio/experiments/models.97/pdb/1a/1as4A/nostruct-align/1as4A.t2k-w0.5.mod(22): Reading nostruct-align/1as4A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc58-4947/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1a/1as4A/nostruct-align/1as4A.t2k-w0.5.mod (nostruct-align/1as4A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1a/1as4A/nostruct-align/1as4A.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.620678 /projects/compbio/experiments/models.97/pdb/1n/1ndoB/nostruct-align/1ndoB.t2k-w0.5.mod(21): Reading nostruct-align/1ndoB.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc61-3818/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1n/1ndoB/nostruct-align/1ndoB.t2k-w0.5.mod (nostruct-align/1ndoB.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1n/1ndoB/nostruct-align/1ndoB.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.885695 /projects/compbio/experiments/models.97/pdb/1e/1erd/nostruct-align/1erd.t2k-w0.5.mod(21): Reading nostruct-align/1erd.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc72-15523/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1erd/nostruct-align/1erd.t2k-w0.5.mod (nostruct-align/1erd.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1erd/nostruct-align/1erd.t2k-w0.5.mod . Average NLL-Simple NULL score: -15.623671 /projects/compbio/experiments/models.97/pdb/1c/1c14A/nostruct-align/1c14A.t2k-w0.5.mod(21): Reading nostruct-align/1c14A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc65-21266/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1c/1c14A/nostruct-align/1c14A.t2k-w0.5.mod (nostruct-align/1c14A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1c/1c14A/nostruct-align/1c14A.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.414698 /projects/compbio/experiments/models.97/pdb/1a/1as4B/nostruct-align/1as4B.t2k-w0.5.mod(22): Reading nostruct-align/1as4B.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc22-4120/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1a/1as4B/nostruct-align/1as4B.t2k-w0.5.mod (nostruct-align/1as4B.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1a/1as4B/nostruct-align/1as4B.t2k-w0.5.mod . Average NLL-Simple NULL score: -15.873689 /projects/compbio/experiments/models.97/pdb/1v/1vcbA/nostruct-align/1vcbA.t2k-w0.5.mod(22): Reading nostruct-align/1vcbA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc64-8417/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1v/1vcbA/nostruct-align/1vcbA.t2k-w0.5.mod (nostruct-align/1vcbA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1v/1vcbA/nostruct-align/1vcbA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.209681 /projects/compbio/experiments/models.97/pdb/1v/1vcbB/nostruct-align/1vcbB.t2k-w0.5.mod(21): Reading nostruct-align/1vcbB.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc46-20321/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1v/1vcbB/nostruct-align/1vcbB.t2k-w0.5.mod (nostruct-align/1vcbB.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1v/1vcbB/nostruct-align/1vcbB.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.792673 /projects/compbio/experiments/models.97/pdb/1v/1vcbC/nostruct-align/1vcbC.t2k-w0.5.mod(22): Reading nostruct-align/1vcbC.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc70-19189/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1v/1vcbC/nostruct-align/1vcbC.t2k-w0.5.mod (nostruct-align/1vcbC.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1v/1vcbC/nostruct-align/1vcbC.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.898670 /projects/compbio/experiments/models.97/pdb/1c/1cjaA/nostruct-align/1cjaA.t2k-w0.5.mod(22): Reading nostruct-align/1cjaA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc55-7838/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1c/1cjaA/nostruct-align/1cjaA.t2k-w0.5.mod (nostruct-align/1cjaA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1c/1cjaA/nostruct-align/1cjaA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.412691 /projects/compbio/experiments/models.97/pdb/1e/1erp/nostruct-align/1erp.t2k-w0.5.mod(21): Reading nostruct-align/1erp.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc39-21851/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1erp/nostruct-align/1erp.t2k-w0.5.mod (nostruct-align/1erp.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1erp/nostruct-align/1erp.t2k-w0.5.mod . Average NLL-Simple NULL score: -15.582671 /projects/compbio/experiments/models.97/pdb/1b/1bueA/nostruct-align/1bueA.t2k-w0.5.mod(22): Reading nostruct-align/1bueA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc77-25651/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1b/1bueA/nostruct-align/1bueA.t2k-w0.5.mod (nostruct-align/1bueA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1b/1bueA/nostruct-align/1bueA.t2k-w0.5.mod . Average NLL-Simple NULL score: -22.843679 /projects/compbio/experiments/models.97/pdb/1e/1ebmA/nostruct-align/1ebmA.t2k-w0.5.mod(22): Reading nostruct-align/1ebmA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc63-27978/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1ebmA/nostruct-align/1ebmA.t2k-w0.5.mod (nostruct-align/1ebmA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1ebmA/nostruct-align/1ebmA.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.838686 /projects/compbio/experiments/models.97/pdb/1a/1a0aA/nostruct-align/1a0aA.t2k-w0.5.mod(22): Reading nostruct-align/1a0aA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc22-3911/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1a/1a0aA/nostruct-align/1a0aA.t2k-w0.5.mod (nostruct-align/1a0aA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1a/1a0aA/nostruct-align/1a0aA.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.152672 /projects/compbio/experiments/models.97/pdb/1i/1iawA/nostruct-align/1iawA.t2k-w0.5.mod(22): Reading nostruct-align/1iawA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc50-30261/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1i/1iawA/nostruct-align/1iawA.t2k-w0.5.mod (nostruct-align/1iawA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1i/1iawA/nostruct-align/1iawA.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.062677 /projects/compbio/experiments/models.97/pdb/1e/1erv/nostruct-align/1erv.t2k-w0.5.mod(21): Reading nostruct-align/1erv.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc72-24202/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1erv/nostruct-align/1erv.t2k-w0.5.mod (nostruct-align/1erv.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1erv/nostruct-align/1erv.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.577671 /projects/compbio/experiments/models.97/pdb/1c/1cqkA/nostruct-align/1cqkA.t2k-w0.5.mod(21): Reading nostruct-align/1cqkA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc63-25801/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1c/1cqkA/nostruct-align/1cqkA.t2k-w0.5.mod (nostruct-align/1cqkA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1c/1cqkA/nostruct-align/1cqkA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.101677 /projects/compbio/experiments/models.97/pdb/1g/1gpuA/nostruct-align/1gpuA.t2k-w0.5.mod(22): Reading nostruct-align/1gpuA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc61-26879/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1g/1gpuA/nostruct-align/1gpuA.t2k-w0.5.mod (nostruct-align/1gpuA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1g/1gpuA/nostruct-align/1gpuA.t2k-w0.5.mod . Average NLL-Simple NULL score: -23.927687 /projects/compbio/experiments/models.97/pdb/1g/1gr3A/nostruct-align/1gr3A.t2k-w0.5.mod(22): Reading nostruct-align/1gr3A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc49-5527/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1g/1gr3A/nostruct-align/1gr3A.t2k-w0.5.mod (nostruct-align/1gr3A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1g/1gr3A/nostruct-align/1gr3A.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.577694 /projects/compbio/experiments/models.97/pdb/1e/1erw/nostruct-align/1erw.t2k-w0.5.mod(21): Reading nostruct-align/1erw.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc52-11485/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1erw/nostruct-align/1erw.t2k-w0.5.mod (nostruct-align/1erw.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1erw/nostruct-align/1erw.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.079683 /projects/compbio/experiments/models.97/pdb/3e/3egf/nostruct-align/3egf.t2k-w0.5.mod(21): Reading nostruct-align/3egf.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc26-29675/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/3e/3egf/nostruct-align/3egf.t2k-w0.5.mod (nostruct-align/3egf.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/3e/3egf/nostruct-align/3egf.t2k-w0.5.mod . Average NLL-Simple NULL score: -15.626698 /projects/compbio/experiments/models.97/pdb/1e/1ery/nostruct-align/1ery.t2k-w0.5.mod(21): Reading nostruct-align/1ery.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc10-25559/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1ery/nostruct-align/1ery.t2k-w0.5.mod (nostruct-align/1ery.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1ery/nostruct-align/1ery.t2k-w0.5.mod . Average NLL-Simple NULL score: -15.349682 /projects/compbio/experiments/models.97/pdb/1h/1hn9A/nostruct-align/1hn9A.t2k-w0.5.mod(21): Reading nostruct-align/1hn9A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc64-12716/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1h/1hn9A/nostruct-align/1hn9A.t2k-w0.5.mod (nostruct-align/1hn9A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1h/1hn9A/nostruct-align/1hn9A.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.203686 /projects/compbio/experiments/models.97/pdb/1l/1lldA/nostruct-align/1lldA.t2k-w0.5.mod(21): Reading nostruct-align/1lldA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc52-10484/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1l/1lldA/nostruct-align/1lldA.t2k-w0.5.mod (nostruct-align/1lldA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1l/1lldA/nostruct-align/1lldA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.815691 /projects/compbio/experiments/models.97/pdb/1e/1eiwA/nostruct-align/1eiwA.t2k-w0.5.mod(21): Reading nostruct-align/1eiwA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc10-27291/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1eiwA/nostruct-align/1eiwA.t2k-w0.5.mod (nostruct-align/1eiwA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1eiwA/nostruct-align/1eiwA.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.988693 /projects/compbio/experiments/models.97/pdb/1e/1e6uA/nostruct-align/1e6uA.t2k-w0.5.mod(22): Reading nostruct-align/1e6uA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc35-13462/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1e6uA/nostruct-align/1e6uA.t2k-w0.5.mod (nostruct-align/1e6uA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1e6uA/nostruct-align/1e6uA.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.464676 /projects/compbio/experiments/models.97/pdb/1t/1ten/nostruct-align/1ten.t2k-w0.5.mod(21): Reading nostruct-align/1ten.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc69-23763/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1t/1ten/nostruct-align/1ten.t2k-w0.5.mod (nostruct-align/1ten.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1t/1ten/nostruct-align/1ten.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.186699 /projects/compbio/experiments/models.97/pdb/1k/1kwhA/nostruct-align/1kwhA.t2k-w0.5.mod(22): Reading nostruct-align/1kwhA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc42-3786/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1k/1kwhA/nostruct-align/1kwhA.t2k-w0.5.mod (nostruct-align/1kwhA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1k/1kwhA/nostruct-align/1kwhA.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.469694 /projects/compbio/experiments/models.97/pdb/1q/1qgtA/nostruct-align/1qgtA.t2k-w0.5.mod(21): Reading nostruct-align/1qgtA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc30-6052/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1q/1qgtA/nostruct-align/1qgtA.t2k-w0.5.mod (nostruct-align/1qgtA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1q/1qgtA/nostruct-align/1qgtA.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.497686 /projects/compbio/experiments/models.97/pdb/1b/1b3qA/nostruct-align/1b3qA.t2k-w0.5.mod(21): Reading nostruct-align/1b3qA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc32-3770/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1b/1b3qA/nostruct-align/1b3qA.t2k-w0.5.mod (nostruct-align/1b3qA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1b/1b3qA/nostruct-align/1b3qA.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.029696 /projects/compbio/experiments/models.97/pdb/1t/1ter/nostruct-align/1ter.t2k-w0.5.mod(21): Reading nostruct-align/1ter.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc78-16276/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1t/1ter/nostruct-align/1ter.t2k-w0.5.mod (nostruct-align/1ter.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1t/1ter/nostruct-align/1ter.t2k-w0.5.mod . Average NLL-Simple NULL score: -16.312681 /projects/compbio/experiments/models.97/pdb/1e/1esc/nostruct-align/1esc.t2k-w0.5.mod(22): Reading nostruct-align/1esc.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc75-5885/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1esc/nostruct-align/1esc.t2k-w0.5.mod (nostruct-align/1esc.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1esc/nostruct-align/1esc.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.301676 /projects/compbio/experiments/models.97/pdb/1p/1prxA/nostruct-align/1prxA.t2k-w0.5.mod(22): Reading nostruct-align/1prxA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc54-2727/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1p/1prxA/nostruct-align/1prxA.t2k-w0.5.mod (nostruct-align/1prxA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1p/1prxA/nostruct-align/1prxA.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.750700 /projects/compbio/experiments/models.97/pdb/1p/1prxB/nostruct-align/1prxB.t2k-w0.5.mod(22): Reading nostruct-align/1prxB.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc71-21876/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1p/1prxB/nostruct-align/1prxB.t2k-w0.5.mod (nostruct-align/1prxB.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1p/1prxB/nostruct-align/1prxB.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.617682 /projects/compbio/experiments/models.97/pdb/2a/2ayh/nostruct-align/2ayh.t2k-w0.5.mod(21): Reading nostruct-align/2ayh.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc62-9234/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/2a/2ayh/nostruct-align/2ayh.t2k-w0.5.mod (nostruct-align/2ayh.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/2a/2ayh/nostruct-align/2ayh.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.489679 /projects/compbio/experiments/models.97/pdb/1e/1esl/nostruct-align/1esl.t2k-w0.5.mod(21): Reading nostruct-align/1esl.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc42-2482/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1esl/nostruct-align/1esl.t2k-w0.5.mod (nostruct-align/1esl.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1esl/nostruct-align/1esl.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.219673 /projects/compbio/experiments/models.97/pdb/1c/1cjbA/nostruct-align/1cjbA.t2k-w0.5.mod(21): Reading nostruct-align/1cjbA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc18-787/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1c/1cjbA/nostruct-align/1cjbA.t2k-w0.5.mod (nostruct-align/1cjbA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1c/1cjbA/nostruct-align/1cjbA.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.747681 /projects/compbio/experiments/models.97/pdb/1k/1khvA/nostruct-align/1khvA.t2k-w0.5.mod(22): Reading nostruct-align/1khvA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc24-18013/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1k/1khvA/nostruct-align/1khvA.t2k-w0.5.mod (nostruct-align/1khvA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1k/1khvA/nostruct-align/1khvA.t2k-w0.5.mod . Average NLL-Simple NULL score: -22.464689 /projects/compbio/experiments/models.97/pdb/1e/1eso/nostruct-align/1eso.t2k-w0.5.mod(21): Reading nostruct-align/1eso.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc97-8937/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1eso/nostruct-align/1eso.t2k-w0.5.mod (nostruct-align/1eso.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1eso/nostruct-align/1eso.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.911692 /projects/compbio/experiments/models.97/pdb/1f/1ftpA/nostruct-align/1ftpA.t2k-w0.5.mod(21): Reading nostruct-align/1ftpA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc10-28774/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1ftpA/nostruct-align/1ftpA.t2k-w0.5.mod (nostruct-align/1ftpA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1ftpA/nostruct-align/1ftpA.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.230698 /projects/compbio/experiments/models.97/pdb/2a/2ahjA/nostruct-align/2ahjA.t2k-w0.5.mod(22): Reading nostruct-align/2ahjA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc19-13656/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/2a/2ahjA/nostruct-align/2ahjA.t2k-w0.5.mod (nostruct-align/2ahjA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/2a/2ahjA/nostruct-align/2ahjA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.378698 /projects/compbio/experiments/models.97/pdb/1l/1l1zA/nostruct-align/1l1zA.t2k-w0.5.mod(22): Reading nostruct-align/1l1zA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc76-1089/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1l/1l1zA/nostruct-align/1l1zA.t2k-w0.5.mod (nostruct-align/1l1zA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1l/1l1zA/nostruct-align/1l1zA.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.078672 /projects/compbio/experiments/models.97/pdb/2a/2ahjB/nostruct-align/2ahjB.t2k-w0.5.mod(22): Reading nostruct-align/2ahjB.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc21-4239/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/2a/2ahjB/nostruct-align/2ahjB.t2k-w0.5.mod (nostruct-align/2ahjB.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/2a/2ahjB/nostruct-align/2ahjB.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.151680 /projects/compbio/experiments/models.97/pdb/1t/1tfb/nostruct-align/1tfb.t2k-w0.5.mod(21): Reading nostruct-align/1tfb.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc18-22123/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1t/1tfb/nostruct-align/1tfb.t2k-w0.5.mod (nostruct-align/1tfb.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1t/1tfb/nostruct-align/1tfb.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.835678 /projects/compbio/experiments/models.97/pdb/2a/2ahjC/nostruct-align/2ahjC.t2k-w0.5.mod(22): Reading nostruct-align/2ahjC.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc67-9789/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/2a/2ahjC/nostruct-align/2ahjC.t2k-w0.5.mod (nostruct-align/2ahjC.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/2a/2ahjC/nostruct-align/2ahjC.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.392691 /projects/compbio/experiments/models.97/pdb/1n/1nscA/nostruct-align/1nscA.t2k-w0.5.mod(21): Reading nostruct-align/1nscA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc48-18209/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1n/1nscA/nostruct-align/1nscA.t2k-w0.5.mod (nostruct-align/1nscA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1n/1nscA/nostruct-align/1nscA.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.271677 /projects/compbio/experiments/models.97/pdb/1i/1ic6A/nostruct-align/1ic6A.t2k-w0.5.mod(21): Reading nostruct-align/1ic6A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc76-1446/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1i/1ic6A/nostruct-align/1ic6A.t2k-w0.5.mod (nostruct-align/1ic6A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1i/1ic6A/nostruct-align/1ic6A.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.517693 /projects/compbio/experiments/models.97/pdb/2b/2bdpA/nostruct-align/2bdpA.t2k-w0.5.mod(21): Reading nostruct-align/2bdpA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc70-6479/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/2b/2bdpA/nostruct-align/2bdpA.t2k-w0.5.mod (nostruct-align/2bdpA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/2b/2bdpA/nostruct-align/2bdpA.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.665691 /projects/compbio/experiments/models.97/pdb/1t/1tfe/nostruct-align/1tfe.t2k-w0.5.mod(22): Reading nostruct-align/1tfe.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc74-971/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1t/1tfe/nostruct-align/1tfe.t2k-w0.5.mod (nostruct-align/1tfe.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1t/1tfe/nostruct-align/1tfe.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.638676 /projects/compbio/experiments/models.97/pdb/2p/2plc/nostruct-align/2plc.t2k-w0.5.mod(22): Reading nostruct-align/2plc.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc53-17675/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/2p/2plc/nostruct-align/2plc.t2k-w0.5.mod (nostruct-align/2plc.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/2p/2plc/nostruct-align/2plc.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.041691 /projects/compbio/experiments/models.97/pdb/1t/1tfg/nostruct-align/1tfg.t2k-w0.5.mod(21): Reading nostruct-align/1tfg.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc61-24274/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1t/1tfg/nostruct-align/1tfg.t2k-w0.5.mod (nostruct-align/1tfg.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1t/1tfg/nostruct-align/1tfg.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.480694 /projects/compbio/experiments/models.97/pdb/1d/1do0A/nostruct-align/1do0A.t2k-w0.5.mod(21): Reading nostruct-align/1do0A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc21-14986/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1d/1do0A/nostruct-align/1do0A.t2k-w0.5.mod (nostruct-align/1do0A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1d/1do0A/nostruct-align/1do0A.t2k-w0.5.mod . Average NLL-Simple NULL score: -24.262690 /projects/compbio/experiments/models.97/pdb/1t/1tfi/nostruct-align/1tfi.t2k-w0.5.mod(21): Reading nostruct-align/1tfi.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc17-17405/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1t/1tfi/nostruct-align/1tfi.t2k-w0.5.mod (nostruct-align/1tfi.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1t/1tfi/nostruct-align/1tfi.t2k-w0.5.mod . Average NLL-Simple NULL score: -15.587678 /projects/compbio/experiments/models.97/pdb/1e/1ek6A/nostruct-align/1ek6A.t2k-w0.5.mod(21): Reading nostruct-align/1ek6A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc86-8479/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1ek6A/nostruct-align/1ek6A.t2k-w0.5.mod (nostruct-align/1ek6A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1ek6A/nostruct-align/1ek6A.t2k-w0.5.mod . Average NLL-Simple NULL score: -22.205673 /projects/compbio/experiments/models.97/pdb/1c/1cz4A/nostruct-align/1cz4A.t2k-w0.5.mod(21): Reading nostruct-align/1cz4A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc58-26499/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1c/1cz4A/nostruct-align/1cz4A.t2k-w0.5.mod (nostruct-align/1cz4A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1c/1cz4A/nostruct-align/1cz4A.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.086674 /projects/compbio/experiments/models.97/pdb/1c/1cxvA/nostruct-align/1cxvA.t2k-w0.5.mod(21): Reading nostruct-align/1cxvA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc19-16008/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1c/1cxvA/nostruct-align/1cxvA.t2k-w0.5.mod (nostruct-align/1cxvA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1c/1cxvA/nostruct-align/1cxvA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.804689 /projects/compbio/experiments/models.97/pdb/1b/1bftA/nostruct-align/1bftA.t2k-w0.5.mod(22): Reading nostruct-align/1bftA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc62-27149/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1b/1bftA/nostruct-align/1bftA.t2k-w0.5.mod (nostruct-align/1bftA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1b/1bftA/nostruct-align/1bftA.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.160685 /projects/compbio/experiments/models.97/pdb/1q/1qguA/nostruct-align/1qguA.t2k-w0.5.mod(21): Reading nostruct-align/1qguA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc67-24950/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1q/1qguA/nostruct-align/1qguA.t2k-w0.5.mod (nostruct-align/1qguA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1q/1qguA/nostruct-align/1qguA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.856684 /projects/compbio/experiments/models.97/pdb/1b/1b3rA/nostruct-align/1b3rA.t2k-w0.5.mod(21): Reading nostruct-align/1b3rA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc38-8877/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1b/1b3rA/nostruct-align/1b3rA.t2k-w0.5.mod (nostruct-align/1b3rA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1b/1b3rA/nostruct-align/1b3rA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.937689 /projects/compbio/experiments/models.97/pdb/1q/1qguB/nostruct-align/1qguB.t2k-w0.5.mod(21): Reading nostruct-align/1qguB.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc50-2091/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1q/1qguB/nostruct-align/1qguB.t2k-w0.5.mod (nostruct-align/1qguB.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1q/1qguB/nostruct-align/1qguB.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.674671 /projects/compbio/experiments/models.97/pdb/1t/1tfr/nostruct-align/1tfr.t2k-w0.5.mod(22): Reading nostruct-align/1tfr.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc73-5370/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1t/1tfr/nostruct-align/1tfr.t2k-w0.5.mod (nostruct-align/1tfr.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1t/1tfr/nostruct-align/1tfr.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.153688 /projects/compbio/experiments/models.97/pdb/1e/1etc/nostruct-align/1etc.t2k-w0.5.mod(21): Reading nostruct-align/1etc.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc07-28655/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1etc/nostruct-align/1etc.t2k-w0.5.mod (nostruct-align/1etc.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1etc/nostruct-align/1etc.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.309673 /projects/compbio/experiments/models.97/pdb/1t/1tfs/nostruct-align/1tfs.t2k-w0.5.mod(21): Reading nostruct-align/1tfs.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc07-30494/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1t/1tfs/nostruct-align/1tfs.t2k-w0.5.mod (nostruct-align/1tfs.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1t/1tfs/nostruct-align/1tfs.t2k-w0.5.mod . Average NLL-Simple NULL score: -16.134674 /projects/compbio/experiments/models.97/pdb/1k/1kamA/nostruct-align/1kamA.t2k-w0.5.mod(22): Reading nostruct-align/1kamA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc65-1106/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1k/1kamA/nostruct-align/1kamA.t2k-w0.5.mod (nostruct-align/1kamA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1k/1kamA/nostruct-align/1kamA.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.863688 /projects/compbio/experiments/models.97/pdb/2p/2plt/nostruct-align/2plt.t2k-w0.5.mod(22): Reading nostruct-align/2plt.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc41-6476/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/2p/2plt/nostruct-align/2plt.t2k-w0.5.mod (nostruct-align/2plt.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/2p/2plt/nostruct-align/2plt.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.878696 /projects/compbio/experiments/models.97/pdb/3p/3pghA/nostruct-align/3pghA.t2k-w0.5.mod(21): Reading nostruct-align/3pghA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc12-5444/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/3p/3pghA/nostruct-align/3pghA.t2k-w0.5.mod (nostruct-align/3pghA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/3p/3pghA/nostruct-align/3pghA.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.101683 /projects/compbio/experiments/models.97/pdb/1c/1cjcA/nostruct-align/1cjcA.t2k-w0.5.mod(22): Reading nostruct-align/1cjcA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc42-1500/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1c/1cjcA/nostruct-align/1cjcA.t2k-w0.5.mod (nostruct-align/1cjcA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1c/1cjcA/nostruct-align/1cjcA.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.105673 /projects/compbio/experiments/models.97/pdb/1a/1ayaA/nostruct-align/1ayaA.t2k-w0.5.mod(21): Reading nostruct-align/1ayaA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc55-12957/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1a/1ayaA/nostruct-align/1ayaA.t2k-w0.5.mod (nostruct-align/1ayaA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1a/1ayaA/nostruct-align/1ayaA.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.007696 /projects/compbio/experiments/models.97/pdb/4p/4pah/nostruct-align/4pah.t2k-w0.5.mod(22): Reading nostruct-align/4pah.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc71-29683/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/4p/4pah/nostruct-align/4pah.t2k-w0.5.mod (nostruct-align/4pah.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/4p/4pah/nostruct-align/4pah.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.736685 /projects/compbio/experiments/models.97/pdb/3m/3mddA/nostruct-align/3mddA.t2k-w0.5.mod(22): Reading nostruct-align/3mddA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc76-15613/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/3m/3mddA/nostruct-align/3mddA.t2k-w0.5.mod (nostruct-align/3mddA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/3m/3mddA/nostruct-align/3mddA.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.105679 /projects/compbio/experiments/models.97/pdb/1e/1exkA/nostruct-align/1exkA.t2k-w0.5.mod(21): Reading nostruct-align/1exkA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc43-29984/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1exkA/nostruct-align/1exkA.t2k-w0.5.mod (nostruct-align/1exkA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1exkA/nostruct-align/1exkA.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.022673 /projects/compbio/experiments/models.97/pdb/1d/1d3gA/nostruct-align/1d3gA.t2k-w0.5.mod(22): Reading nostruct-align/1d3gA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc28-4727/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1d/1d3gA/nostruct-align/1d3gA.t2k-w0.5.mod (nostruct-align/1d3gA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1d/1d3gA/nostruct-align/1d3gA.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.945673 /projects/compbio/experiments/models.97/pdb/6a/6acn/nostruct-align/6acn.t2k-w0.5.mod(21): Reading nostruct-align/6acn.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc07-32419/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/6a/6acn/nostruct-align/6acn.t2k-w0.5.mod (nostruct-align/6acn.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/6a/6acn/nostruct-align/6acn.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.221687 /projects/compbio/experiments/models.97/pdb/1e/1etu/nostruct-align/1etu.t2k-w0.5.mod(22): Reading nostruct-align/1etu.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc73-14123/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1etu/nostruct-align/1etu.t2k-w0.5.mod (nostruct-align/1etu.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1etu/nostruct-align/1etu.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.588697 /projects/compbio/experiments/models.97/pdb/1a/1a0cA/nostruct-align/1a0cA.t2k-w0.5.mod(21): Reading nostruct-align/1a0cA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc20-23578/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1a/1a0cA/nostruct-align/1a0cA.t2k-w0.5.mod (nostruct-align/1a0cA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1a/1a0cA/nostruct-align/1a0cA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.952686 /projects/compbio/experiments/models.97/pdb/1c/1cqmA/nostruct-align/1cqmA.t2k-w0.5.mod(22): Reading nostruct-align/1cqmA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc35-26624/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1c/1cqmA/nostruct-align/1cqmA.t2k-w0.5.mod (nostruct-align/1cqmA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1c/1cqmA/nostruct-align/1cqmA.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.276688 /projects/compbio/experiments/models.97/pdb/1i/1i05A/nostruct-align/1i05A.t2k-w0.5.mod(21): Reading nostruct-align/1i05A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc06-21356/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1i/1i05A/nostruct-align/1i05A.t2k-w0.5.mod (nostruct-align/1i05A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1i/1i05A/nostruct-align/1i05A.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.571682 /projects/compbio/experiments/models.97/pdb/1g/1gpwB/nostruct-align/1gpwB.t2k-w0.5.mod(22): Reading nostruct-align/1gpwB.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc20-21088/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1g/1gpwB/nostruct-align/1gpwB.t2k-w0.5.mod (nostruct-align/1gpwB.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1g/1gpwB/nostruct-align/1gpwB.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.384678 /projects/compbio/experiments/models.97/pdb/2c/2cb5A/nostruct-align/2cb5A.t2k-w0.5.mod(22): Reading nostruct-align/2cb5A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc71-3512/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/2c/2cb5A/nostruct-align/2cb5A.t2k-w0.5.mod (nostruct-align/2cb5A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/2c/2cb5A/nostruct-align/2cb5A.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.978674 /projects/compbio/experiments/models.97/pdb/1e/1eiyB/nostruct-align/1eiyB.t2k-w0.5.mod(21): Reading nostruct-align/1eiyB.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc32-16731/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1eiyB/nostruct-align/1eiyB.t2k-w0.5.mod (nostruct-align/1eiyB.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1eiyB/nostruct-align/1eiyB.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.793690 /projects/compbio/experiments/models.97/pdb/1i/1iibA/nostruct-align/1iibA.t2k-w0.5.mod(22): Reading nostruct-align/1iibA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc58-7227/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1i/1iibA/nostruct-align/1iibA.t2k-w0.5.mod (nostruct-align/1iibA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1i/1iibA/nostruct-align/1iibA.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.726690 /projects/compbio/experiments/models.97/pdb/1e/1e85A/nostruct-align/1e85A.t2k-w0.5.mod(22): Reading nostruct-align/1e85A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc49-14726/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1e85A/nostruct-align/1e85A.t2k-w0.5.mod (nostruct-align/1e85A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1e85A/nostruct-align/1e85A.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.893688 /projects/compbio/experiments/models.97/pdb/1e/1e6wA/nostruct-align/1e6wA.t2k-w0.5.mod(21): Reading nostruct-align/1e6wA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc62-27069/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1e6wA/nostruct-align/1e6wA.t2k-w0.5.mod (nostruct-align/1e6wA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1e6wA/nostruct-align/1e6wA.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.393682 /projects/compbio/experiments/models.97/pdb/1c/1cxwA/nostruct-align/1cxwA.t2k-w0.5.mod(21): Reading nostruct-align/1cxwA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc63-14518/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1c/1cxwA/nostruct-align/1cxwA.t2k-w0.5.mod (nostruct-align/1cxwA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1c/1cxwA/nostruct-align/1cxwA.t2k-w0.5.mod . Average NLL-Simple NULL score: -15.752672 /projects/compbio/experiments/models.97/pdb/1m/1mhlA/nostruct-align/1mhlA.t2k-w0.5.mod(21): Reading nostruct-align/1mhlA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc67-7213/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1m/1mhlA/nostruct-align/1mhlA.t2k-w0.5.mod (nostruct-align/1mhlA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1m/1mhlA/nostruct-align/1mhlA.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.634680 /projects/compbio/experiments/models.97/pdb/1q/1qgvA/nostruct-align/1qgvA.t2k-w0.5.mod(22): Reading nostruct-align/1qgvA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc23-21593/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1q/1qgvA/nostruct-align/1qgvA.t2k-w0.5.mod (nostruct-align/1qgvA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1q/1qgvA/nostruct-align/1qgvA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.084684 /projects/compbio/experiments/models.97/pdb/1m/1mhlC/nostruct-align/1mhlC.t2k-w0.5.mod(21): Reading nostruct-align/1mhlC.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc75-10504/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1m/1mhlC/nostruct-align/1mhlC.t2k-w0.5.mod (nostruct-align/1mhlC.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1m/1mhlC/nostruct-align/1mhlC.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.553680 /projects/compbio/experiments/models.97/pdb/1c/1cd9B/nostruct-align/1cd9B.t2k-w0.5.mod(22): Reading nostruct-align/1cd9B.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc21-2067/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1c/1cd9B/nostruct-align/1cd9B.t2k-w0.5.mod (nostruct-align/1cd9B.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1c/1cd9B/nostruct-align/1cd9B.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.160696 /projects/compbio/experiments/models.97/pdb/1c/1cd9C/nostruct-align/1cd9C.t2k-w0.5.mod(21): Reading nostruct-align/1cd9C.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc43-28815/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1c/1cd9C/nostruct-align/1cd9C.t2k-w0.5.mod (nostruct-align/1cd9C.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1c/1cd9C/nostruct-align/1cd9C.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.863689 /projects/compbio/experiments/models.97/pdb/1k/1kanA/nostruct-align/1kanA.t2k-w0.5.mod(21): Reading nostruct-align/1kanA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc86-6757/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1k/1kanA/nostruct-align/1kanA.t2k-w0.5.mod (nostruct-align/1kanA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1k/1kanA/nostruct-align/1kanA.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.661680 /projects/compbio/experiments/models.97/pdb/1f/1fmhA/nostruct-align/1fmhA.t2k-w0.5.mod(21): Reading nostruct-align/1fmhA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc52-730/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1fmhA/nostruct-align/1fmhA.t2k-w0.5.mod (nostruct-align/1fmhA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1fmhA/nostruct-align/1fmhA.t2k-w0.5.mod . Average NLL-Simple NULL score: -15.513675 /projects/compbio/experiments/models.97/pdb/1f/1fmhB/nostruct-align/1fmhB.t2k-w0.5.mod(21): Reading nostruct-align/1fmhB.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc22-26553/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1fmhB/nostruct-align/1fmhB.t2k-w0.5.mod (nostruct-align/1fmhB.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1fmhB/nostruct-align/1fmhB.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.134695 /projects/compbio/experiments/models.97/pdb/1c/1cjdA/nostruct-align/1cjdA.t2k-w0.5.mod(21): Reading nostruct-align/1cjdA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc47-12083/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1c/1cjdA/nostruct-align/1cjdA.t2k-w0.5.mod (nostruct-align/1cjdA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1c/1cjdA/nostruct-align/1cjdA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.542690 /projects/compbio/experiments/models.97/pdb/1k/1kj6A/nostruct-align/1kj6A.t2k-w0.5.mod(22): Reading nostruct-align/1kj6A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc68-4079/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1k/1kj6A/nostruct-align/1kj6A.t2k-w0.5.mod (nostruct-align/1kj6A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1k/1kj6A/nostruct-align/1kj6A.t2k-w0.5.mod . Average NLL-Simple NULL score: -15.628675 /projects/compbio/experiments/models.97/pdb/1k/1khxA/nostruct-align/1khxA.t2k-w0.5.mod(22): Reading nostruct-align/1khxA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc87-14152/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1k/1khxA/nostruct-align/1khxA.t2k-w0.5.mod (nostruct-align/1khxA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1k/1khxA/nostruct-align/1khxA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.175680 /projects/compbio/experiments/models.97/pdb/3m/3mdeA/nostruct-align/3mdeA.t2k-w0.5.mod(21): Reading nostruct-align/3mdeA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc18-1557/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/3m/3mdeA/nostruct-align/3mdeA.t2k-w0.5.mod (nostruct-align/3mdeA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/3m/3mdeA/nostruct-align/3mdeA.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.144691 /projects/compbio/experiments/models.97/pdb/1g/1g3p/nostruct-align/1g3p.t2k-w0.5.mod(22): Reading nostruct-align/1g3p.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc64-32724/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1g/1g3p/nostruct-align/1g3p.t2k-w0.5.mod (nostruct-align/1g3p.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1g/1g3p/nostruct-align/1g3p.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.667675 /projects/compbio/experiments/models.97/pdb/1c/1c17M/nostruct-align/1c17M.t2k-w0.5.mod(21): Reading nostruct-align/1c17M.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc63-20074/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1c/1c17M/nostruct-align/1c17M.t2k-w0.5.mod (nostruct-align/1c17M.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1c/1c17M/nostruct-align/1c17M.t2k-w0.5.mod . Average NLL-Simple NULL score: -24.808674 /projects/compbio/experiments/models.97/pdb/1h/1hetA/nostruct-align/1hetA.t2k-w0.5.mod(22): Reading nostruct-align/1hetA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc69-31591/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1h/1hetA/nostruct-align/1hetA.t2k-w0.5.mod (nostruct-align/1hetA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1h/1hetA/nostruct-align/1hetA.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.250671 /projects/compbio/experiments/models.97/pdb/1e/1eur/nostruct-align/1eur.t2k-w0.5.mod(21): Reading nostruct-align/1eur.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc32-22168/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1eur/nostruct-align/1eur.t2k-w0.5.mod (nostruct-align/1eur.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1eur/nostruct-align/1eur.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.376699 /projects/compbio/experiments/models.97/pdb/1d/1d3hA/nostruct-align/1d3hA.t2k-w0.5.mod(21): Reading nostruct-align/1d3hA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc68-27080/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1d/1d3hA/nostruct-align/1d3hA.t2k-w0.5.mod (nostruct-align/1d3hA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1d/1d3hA/nostruct-align/1d3hA.t2k-w0.5.mod . Average NLL-Simple NULL score: -22.235691 /projects/compbio/experiments/models.97/pdb/1f/1ftrA/nostruct-align/1ftrA.t2k-w0.5.mod(22): Reading nostruct-align/1ftrA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc35-11497/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1ftrA/nostruct-align/1ftrA.t2k-w0.5.mod (nostruct-align/1ftrA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1ftrA/nostruct-align/1ftrA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.809673 /projects/compbio/experiments/models.97/pdb/1b/1buhB/nostruct-align/1buhB.t2k-w0.5.mod(21): Reading nostruct-align/1buhB.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc07-1932/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1b/1buhB/nostruct-align/1buhB.t2k-w0.5.mod (nostruct-align/1buhB.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1b/1buhB/nostruct-align/1buhB.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.019697 /projects/compbio/experiments/models.97/pdb/1e/1eut/nostruct-align/1eut.t2k-w0.5.mod(21): Reading nostruct-align/1eut.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc77-23506/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1eut/nostruct-align/1eut.t2k-w0.5.mod (nostruct-align/1eut.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1eut/nostruct-align/1eut.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.763691 /projects/compbio/experiments/models.97/pdb/1p/1pdgA/nostruct-align/1pdgA.t2k-w0.5.mod(21): Reading nostruct-align/1pdgA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc43-5022/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1p/1pdgA/nostruct-align/1pdgA.t2k-w0.5.mod (nostruct-align/1pdgA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1p/1pdgA/nostruct-align/1pdgA.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.692694 /projects/compbio/experiments/models.97/pdb/1e/1ebpA/nostruct-align/1ebpA.t2k-w0.5.mod(21): Reading nostruct-align/1ebpA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc87-18912/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1ebpA/nostruct-align/1ebpA.t2k-w0.5.mod (nostruct-align/1ebpA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1ebpA/nostruct-align/1ebpA.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.430679 /projects/compbio/experiments/models.97/pdb/1n/1nseA/nostruct-align/1nseA.t2k-w0.5.mod(21): Reading nostruct-align/1nseA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc62-7121/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1n/1nseA/nostruct-align/1nseA.t2k-w0.5.mod (nostruct-align/1nseA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1n/1nseA/nostruct-align/1nseA.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.322699 /projects/compbio/experiments/models.97/pdb/1i/1iazA/nostruct-align/1iazA.t2k-w0.5.mod(22): Reading nostruct-align/1iazA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc48-6363/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1i/1iazA/nostruct-align/1iazA.t2k-w0.5.mod (nostruct-align/1iazA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1i/1iazA/nostruct-align/1iazA.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.566696 /projects/compbio/experiments/models.97/pdb/1e/1euu/nostruct-align/1euu.t2k-w0.5.mod(21): Reading nostruct-align/1euu.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc39-27942/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1euu/nostruct-align/1euu.t2k-w0.5.mod (nostruct-align/1euu.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1euu/nostruct-align/1euu.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.625671 /projects/compbio/experiments/models.97/pdb/1p/1pdgC/nostruct-align/1pdgC.t2k-w0.5.mod(21): Reading nostruct-align/1pdgC.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc39-28152/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1p/1pdgC/nostruct-align/1pdgC.t2k-w0.5.mod (nostruct-align/1pdgC.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1p/1pdgC/nostruct-align/1pdgC.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.664671 /projects/compbio/experiments/models.97/pdb/2p/2pna/nostruct-align/2pna.t2k-w0.5.mod(21): Reading nostruct-align/2pna.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc34-20949/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/2p/2pna/nostruct-align/2pna.t2k-w0.5.mod (nostruct-align/2pna.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/2p/2pna/nostruct-align/2pna.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.319681 /projects/compbio/experiments/models.97/pdb/1i/1i06A/nostruct-align/1i06A.t2k-w0.5.mod(21): Reading nostruct-align/1i06A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc73-21876/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1i/1i06A/nostruct-align/1i06A.t2k-w0.5.mod (nostruct-align/1i06A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1i/1i06A/nostruct-align/1i06A.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.711678 /projects/compbio/experiments/models.97/pdb/1t/1thg/nostruct-align/1thg.t2k-w0.5.mod(21): Reading nostruct-align/1thg.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc71-18691/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1t/1thg/nostruct-align/1thg.t2k-w0.5.mod (nostruct-align/1thg.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1t/1thg/nostruct-align/1thg.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.329678 /projects/compbio/experiments/models.97/pdb/1d/1dmtA/nostruct-align/1dmtA.t2k-w0.5.mod(22): Reading nostruct-align/1dmtA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc22-5162/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1d/1dmtA/nostruct-align/1dmtA.t2k-w0.5.mod (nostruct-align/1dmtA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1d/1dmtA/nostruct-align/1dmtA.t2k-w0.5.mod . Average NLL-Simple NULL score: -23.247681 /projects/compbio/experiments/models.97/pdb/1e/1ek8A/nostruct-align/1ek8A.t2k-w0.5.mod(22): Reading nostruct-align/1ek8A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc18-9875/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1ek8A/nostruct-align/1ek8A.t2k-w0.5.mod (nostruct-align/1ek8A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1ek8A/nostruct-align/1ek8A.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.440685 /projects/compbio/experiments/models.97/pdb/1h/1h2rL/nostruct-align/1h2rL.t2k-w0.5.mod(22): Reading nostruct-align/1h2rL.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc73-26726/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1h/1h2rL/nostruct-align/1h2rL.t2k-w0.5.mod (nostruct-align/1h2rL.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1h/1h2rL/nostruct-align/1h2rL.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.694691 /projects/compbio/experiments/models.97/pdb/1t/1thm/nostruct-align/1thm.t2k-w0.5.mod(21): Reading nostruct-align/1thm.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc57-5226/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1t/1thm/nostruct-align/1thm.t2k-w0.5.mod (nostruct-align/1thm.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1t/1thm/nostruct-align/1thm.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.616674 /projects/compbio/experiments/models.97/pdb/1i/1iicA/nostruct-align/1iicA.t2k-w0.5.mod(22): Reading nostruct-align/1iicA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc72-20655/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1i/1iicA/nostruct-align/1iicA.t2k-w0.5.mod (nostruct-align/1iicA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1i/1iicA/nostruct-align/1iicA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.788696 /projects/compbio/experiments/models.97/pdb/1i/1i6aA/nostruct-align/1i6aA.t2k-w0.5.mod(22): Reading nostruct-align/1i6aA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc69-7806/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1i/1i6aA/nostruct-align/1i6aA.t2k-w0.5.mod (nostruct-align/1i6aA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1i/1i6aA/nostruct-align/1i6aA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.530685 /projects/compbio/experiments/models.97/pdb/2i/2if1/nostruct-align/2if1.t2k-w0.5.mod(21): Reading nostruct-align/2if1.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc26-12882/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/2i/2if1/nostruct-align/2if1.t2k-w0.5.mod (nostruct-align/2if1.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/2i/2if1/nostruct-align/2if1.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.128695 /projects/compbio/experiments/models.97/pdb/1b/1b3tA/nostruct-align/1b3tA.t2k-w0.5.mod(22): Reading nostruct-align/1b3tA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc38-12475/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1b/1b3tA/nostruct-align/1b3tA.t2k-w0.5.mod (nostruct-align/1b3tA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1b/1b3tA/nostruct-align/1b3tA.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.552685 /projects/compbio/experiments/models.97/pdb/1q/1qgwA/nostruct-align/1qgwA.t2k-w0.5.mod(22): Reading nostruct-align/1qgwA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc87-1621/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1q/1qgwA/nostruct-align/1qgwA.t2k-w0.5.mod (nostruct-align/1qgwA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1q/1qgwA/nostruct-align/1qgwA.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.438690 /projects/compbio/experiments/models.97/pdb/1q/1qgwB/nostruct-align/1qgwB.t2k-w0.5.mod(22): Reading nostruct-align/1qgwB.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc24-9062/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1q/1qgwB/nostruct-align/1qgwB.t2k-w0.5.mod (nostruct-align/1qgwB.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1q/1qgwB/nostruct-align/1qgwB.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.615685 /projects/compbio/experiments/models.97/pdb/1j/1jeiA/nostruct-align/1jeiA.t2k-w0.5.mod(21): Reading nostruct-align/1jeiA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc84-17755/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1j/1jeiA/nostruct-align/1jeiA.t2k-w0.5.mod (nostruct-align/1jeiA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1j/1jeiA/nostruct-align/1jeiA.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.335699 /projects/compbio/experiments/models.97/pdb/1q/1qgwC/nostruct-align/1qgwC.t2k-w0.5.mod(22): Reading nostruct-align/1qgwC.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc30-30336/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1q/1qgwC/nostruct-align/1qgwC.t2k-w0.5.mod (nostruct-align/1qgwC.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1q/1qgwC/nostruct-align/1qgwC.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.070671 /projects/compbio/experiments/models.97/pdb/1n/1nf1A/nostruct-align/1nf1A.t2k-w0.5.mod(21): Reading nostruct-align/1nf1A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc36-24317/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1n/1nf1A/nostruct-align/1nf1A.t2k-w0.5.mod (nostruct-align/1nf1A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1n/1nf1A/nostruct-align/1nf1A.t2k-w0.5.mod . Average NLL-Simple NULL score: -23.294674 /projects/compbio/experiments/models.97/pdb/1h/1h2rS/nostruct-align/1h2rS.t2k-w0.5.mod(22): Reading nostruct-align/1h2rS.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc62-29853/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1h/1h2rS/nostruct-align/1h2rS.t2k-w0.5.mod (nostruct-align/1h2rS.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1h/1h2rS/nostruct-align/1h2rS.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.507690 /projects/compbio/experiments/models.97/pdb/1a/1as8A/nostruct-align/1as8A.t2k-w0.5.mod(21): Reading nostruct-align/1as8A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc18-8945/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1a/1as8A/nostruct-align/1as8A.t2k-w0.5.mod (nostruct-align/1as8A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1a/1as8A/nostruct-align/1as8A.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.101681 /projects/compbio/experiments/models.97/pdb/1a/1aqzA/nostruct-align/1aqzA.t2k-w0.5.mod(22): Reading nostruct-align/1aqzA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc72-19659/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1a/1aqzA/nostruct-align/1aqzA.t2k-w0.5.mod (nostruct-align/1aqzA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1a/1aqzA/nostruct-align/1aqzA.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.136684 /projects/compbio/experiments/models.97/pdb/1a/1aqzB/nostruct-align/1aqzB.t2k-w0.5.mod(21): Reading nostruct-align/1aqzB.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc31-17076/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1a/1aqzB/nostruct-align/1aqzB.t2k-w0.5.mod (nostruct-align/1aqzB.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1a/1aqzB/nostruct-align/1aqzB.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.148697 /projects/compbio/experiments/models.97/pdb/1e/1eqcA/nostruct-align/1eqcA.t2k-w0.5.mod(22): Reading nostruct-align/1eqcA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc53-18626/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1eqcA/nostruct-align/1eqcA.t2k-w0.5.mod (nostruct-align/1eqcA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1eqcA/nostruct-align/1eqcA.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.108685 /projects/compbio/experiments/models.97/pdb/1t/1thv/nostruct-align/1thv.t2k-w0.5.mod(22): Reading nostruct-align/1thv.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc26-13925/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1t/1thv/nostruct-align/1thv.t2k-w0.5.mod (nostruct-align/1thv.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1t/1thv/nostruct-align/1thv.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.583694 /projects/compbio/experiments/models.97/pdb/1t/1thw/nostruct-align/1thw.t2k-w0.5.mod(21): Reading nostruct-align/1thw.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc59-32031/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1t/1thw/nostruct-align/1thw.t2k-w0.5.mod (nostruct-align/1thw.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1t/1thw/nostruct-align/1thw.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.197691 /projects/compbio/experiments/models.97/pdb/1t/1thx/nostruct-align/1thx.t2k-w0.5.mod(21): Reading nostruct-align/1thx.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc54-470/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1t/1thx/nostruct-align/1thx.t2k-w0.5.mod (nostruct-align/1thx.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1t/1thx/nostruct-align/1thx.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.093676 /projects/compbio/experiments/models.97/pdb/1j/1j9qA/nostruct-align/1j9qA.t2k-w0.5.mod(22): Reading nostruct-align/1j9qA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc69-30398/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1j/1j9qA/nostruct-align/1j9qA.t2k-w0.5.mod (nostruct-align/1j9qA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1j/1j9qA/nostruct-align/1j9qA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.883696 /projects/compbio/experiments/models.97/pdb/1e/1exmA/nostruct-align/1exmA.t2k-w0.5.mod(21): Reading nostruct-align/1exmA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc67-31955/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1exmA/nostruct-align/1exmA.t2k-w0.5.mod (nostruct-align/1exmA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1exmA/nostruct-align/1exmA.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.401695 /projects/compbio/experiments/models.97/pdb/1k/1k75A/nostruct-align/1k75A.t2k-w0.5.mod(22): Reading nostruct-align/1k75A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc44-22321/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1k/1k75A/nostruct-align/1k75A.t2k-w0.5.mod (nostruct-align/1k75A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1k/1k75A/nostruct-align/1k75A.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.697697 /projects/compbio/experiments/models.97/pdb/1h/1heuA/nostruct-align/1heuA.t2k-w0.5.mod(22): Reading nostruct-align/1heuA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc44-2335/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1h/1heuA/nostruct-align/1heuA.t2k-w0.5.mod (nostruct-align/1heuA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1h/1heuA/nostruct-align/1heuA.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.251678 /projects/compbio/experiments/models.97/pdb/1h/1hg3A/nostruct-align/1hg3A.t2k-w0.5.mod(21): Reading nostruct-align/1hg3A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc04-13908/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1h/1hg3A/nostruct-align/1hg3A.t2k-w0.5.mod (nostruct-align/1hg3A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1h/1hg3A/nostruct-align/1hg3A.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.740690 /projects/compbio/experiments/models.97/pdb/1t/1tia/nostruct-align/1tia.t2k-w0.5.mod(21): Reading nostruct-align/1tia.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc97-18104/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1t/1tia/nostruct-align/1tia.t2k-w0.5.mod (nostruct-align/1tia.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1t/1tia/nostruct-align/1tia.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.761698 /projects/compbio/experiments/models.97/pdb/1t/1tib/nostruct-align/1tib.t2k-w0.5.mod(21): Reading nostruct-align/1tib.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc24-26483/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1t/1tib/nostruct-align/1tib.t2k-w0.5.mod (nostruct-align/1tib.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1t/1tib/nostruct-align/1tib.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.922674 /projects/compbio/experiments/models.97/pdb/1t/1tcrA/nostruct-align/1tcrA.t2k-w0.5.mod(21): Reading nostruct-align/1tcrA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc26-29224/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1t/1tcrA/nostruct-align/1tcrA.t2k-w0.5.mod (nostruct-align/1tcrA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1t/1tcrA/nostruct-align/1tcrA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.878689 /projects/compbio/experiments/models.97/pdb/1f/1fv1C/nostruct-align/1fv1C.t2k-w0.5.mod(22): Reading nostruct-align/1fv1C.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc41-12820/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1fv1C/nostruct-align/1fv1C.t2k-w0.5.mod (nostruct-align/1fv1C.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1fv1C/nostruct-align/1fv1C.t2k-w0.5.mod . Average NLL-Simple NULL score: -14.949698 /projects/compbio/experiments/models.97/pdb/1t/1tie/nostruct-align/1tie.t2k-w0.5.mod(21): Reading nostruct-align/1tie.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc88-1664/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1t/1tie/nostruct-align/1tie.t2k-w0.5.mod (nostruct-align/1tie.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1t/1tie/nostruct-align/1tie.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.466684 /projects/compbio/experiments/models.97/pdb/1i/1i07A/nostruct-align/1i07A.t2k-w0.5.mod(21): Reading nostruct-align/1i07A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc06-21552/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1i/1i07A/nostruct-align/1i07A.t2k-w0.5.mod (nostruct-align/1i07A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1i/1i07A/nostruct-align/1i07A.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.523697 /projects/compbio/experiments/models.97/pdb/1t/1tif/nostruct-align/1tif.t2k-w0.5.mod(22): Reading nostruct-align/1tif.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc55-21513/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1t/1tif/nostruct-align/1tif.t2k-w0.5.mod (nostruct-align/1tif.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1t/1tif/nostruct-align/1tif.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.552673 /projects/compbio/experiments/models.97/pdb/1r/1rrpB/nostruct-align/1rrpB.t2k-w0.5.mod(22): Reading nostruct-align/1rrpB.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc71-2937/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1r/1rrpB/nostruct-align/1rrpB.t2k-w0.5.mod (nostruct-align/1rrpB.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1r/1rrpB/nostruct-align/1rrpB.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.743692 /projects/compbio/experiments/models.97/pdb/1t/1tig/nostruct-align/1tig.t2k-w0.5.mod(22): Reading nostruct-align/1tig.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc48-4467/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1t/1tig/nostruct-align/1tig.t2k-w0.5.mod (nostruct-align/1tig.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1t/1tig/nostruct-align/1tig.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.090696 /projects/compbio/experiments/models.97/pdb/1d/1dmuA/nostruct-align/1dmuA.t2k-w0.5.mod(22): Reading nostruct-align/1dmuA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc53-15409/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1d/1dmuA/nostruct-align/1dmuA.t2k-w0.5.mod (nostruct-align/1dmuA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1d/1dmuA/nostruct-align/1dmuA.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.463697 /projects/compbio/experiments/models.97/pdb/1a/1ajqA/nostruct-align/1ajqA.t2k-w0.5.mod(21): Reading nostruct-align/1ajqA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc05-29000/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1a/1ajqA/nostruct-align/1ajqA.t2k-w0.5.mod (nostruct-align/1ajqA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1a/1ajqA/nostruct-align/1ajqA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.083696 /projects/compbio/experiments/models.97/pdb/1l/1l9fA/nostruct-align/1l9fA.t2k-w0.5.mod(22): Reading nostruct-align/1l9fA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc49-6735/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1l/1l9fA/nostruct-align/1l9fA.t2k-w0.5.mod (nostruct-align/1l9fA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1l/1l9fA/nostruct-align/1l9fA.t2k-w0.5.mod . Average NLL-Simple NULL score: -22.991684 /projects/compbio/experiments/models.97/pdb/1e/1ek9A/nostruct-align/1ek9A.t2k-w0.5.mod(22): Reading nostruct-align/1ek9A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc47-12448/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1ek9A/nostruct-align/1ek9A.t2k-w0.5.mod (nostruct-align/1ek9A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1ek9A/nostruct-align/1ek9A.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.470690 /projects/compbio/experiments/models.97/pdb/1a/1ajqB/nostruct-align/1ajqB.t2k-w0.5.mod(21): Reading nostruct-align/1ajqB.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc20-17510/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1a/1ajqB/nostruct-align/1ajqB.t2k-w0.5.mod (nostruct-align/1ajqB.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1a/1ajqB/nostruct-align/1ajqB.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.892687 /projects/compbio/experiments/models.97/pdb/1e/1e87A/nostruct-align/1e87A.t2k-w0.5.mod(21): Reading nostruct-align/1e87A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc33-16383/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1e87A/nostruct-align/1e87A.t2k-w0.5.mod (nostruct-align/1e87A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1e87A/nostruct-align/1e87A.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.446686 /projects/compbio/experiments/models.97/pdb/1e/1e6yA/nostruct-align/1e6yA.t2k-w0.5.mod(22): Reading nostruct-align/1e6yA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc87-10176/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1e6yA/nostruct-align/1e6yA.t2k-w0.5.mod (nostruct-align/1e6yA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1e6yA/nostruct-align/1e6yA.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.058674 /projects/compbio/experiments/models.97/pdb/1c/1cxyA/nostruct-align/1cxyA.t2k-w0.5.mod(21): Reading nostruct-align/1cxyA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc82-22236/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1c/1cxyA/nostruct-align/1cxyA.t2k-w0.5.mod (nostruct-align/1cxyA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1c/1cxyA/nostruct-align/1cxyA.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.389683 /projects/compbio/experiments/models.97/pdb/1t/1tin/nostruct-align/1tin.t2k-w0.5.mod(21): Reading nostruct-align/1tin.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc99-25981/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1t/1tin/nostruct-align/1tin.t2k-w0.5.mod (nostruct-align/1tin.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1t/1tin/nostruct-align/1tin.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.325670 /projects/compbio/experiments/models.97/pdb/1e/1e6yB/nostruct-align/1e6yB.t2k-w0.5.mod(21): Reading nostruct-align/1e6yB.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc50-16104/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1e6yB/nostruct-align/1e6yB.t2k-w0.5.mod (nostruct-align/1e6yB.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1e6yB/nostruct-align/1e6yB.t2k-w0.5.mod . Average NLL-Simple NULL score: -22.856672 /projects/compbio/experiments/models.97/pdb/1b/1bh5A/nostruct-align/1bh5A.t2k-w0.5.mod(21): Reading nostruct-align/1bh5A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc85-20936/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1b/1bh5A/nostruct-align/1bh5A.t2k-w0.5.mod (nostruct-align/1bh5A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1b/1bh5A/nostruct-align/1bh5A.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.212685 /projects/compbio/experiments/models.97/pdb/1e/1e6yC/nostruct-align/1e6yC.t2k-w0.5.mod(22): Reading nostruct-align/1e6yC.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc58-5783/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1e6yC/nostruct-align/1e6yC.t2k-w0.5.mod (nostruct-align/1e6yC.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1e6yC/nostruct-align/1e6yC.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.533691 /projects/compbio/experiments/models.97/pdb/1b/1b3uA/nostruct-align/1b3uA.t2k-w0.5.mod(22): Reading nostruct-align/1b3uA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc66-2623/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1b/1b3uA/nostruct-align/1b3uA.t2k-w0.5.mod (nostruct-align/1b3uA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1b/1b3uA/nostruct-align/1b3uA.t2k-w0.5.mod . Average NLL-Simple NULL score: -25.789696 /projects/compbio/experiments/models.97/pdb/1q/1qi6A/nostruct-align/1qi6A.t2k-w0.5.mod(22): Reading nostruct-align/1qi6A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc45-9582/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1q/1qi6A/nostruct-align/1qi6A.t2k-w0.5.mod (nostruct-align/1qi6A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1q/1qi6A/nostruct-align/1qi6A.t2k-w0.5.mod . Average NLL-Simple NULL score: -22.825699 /projects/compbio/experiments/models.97/pdb/1q/1qgxA/nostruct-align/1qgxA.t2k-w0.5.mod(21): Reading nostruct-align/1qgxA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc28-12697/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1q/1qgxA/nostruct-align/1qgxA.t2k-w0.5.mod (nostruct-align/1qgxA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1q/1qgxA/nostruct-align/1qgxA.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.116684 /projects/compbio/experiments/models.97/pdb/1t/1tit/nostruct-align/1tit.t2k-w0.5.mod(21): Reading nostruct-align/1tit.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc33-11604/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1t/1tit/nostruct-align/1tit.t2k-w0.5.mod (nostruct-align/1tit.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1t/1tit/nostruct-align/1tit.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.549673 /projects/compbio/experiments/models.97/pdb/1t/1tiu/nostruct-align/1tiu.t2k-w0.5.mod(21): Reading nostruct-align/1tiu.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc04-16506/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1t/1tiu/nostruct-align/1tiu.t2k-w0.5.mod (nostruct-align/1tiu.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1t/1tiu/nostruct-align/1tiu.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.549673 /projects/compbio/experiments/models.97/pdb/2p/2por/nostruct-align/2por.t2k-w0.5.mod(21): Reading nostruct-align/2por.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc48-6159/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/2p/2por/nostruct-align/2por.t2k-w0.5.mod (nostruct-align/2por.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/2p/2por/nostruct-align/2por.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.982681 /projects/compbio/experiments/models.97/pdb/1t/1tiv/nostruct-align/1tiv.t2k-w0.5.mod(21): Reading nostruct-align/1tiv.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc86-8616/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1t/1tiv/nostruct-align/1tiv.t2k-w0.5.mod (nostruct-align/1tiv.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1t/1tiv/nostruct-align/1tiv.t2k-w0.5.mod . Average NLL-Simple NULL score: -16.797684 /projects/compbio/experiments/models.97/pdb/1f/1fmjA/nostruct-align/1fmjA.t2k-w0.5.mod(21): Reading nostruct-align/1fmjA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc58-20787/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1fmjA/nostruct-align/1fmjA.t2k-w0.5.mod (nostruct-align/1fmjA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1fmjA/nostruct-align/1fmjA.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.104698 /projects/compbio/experiments/models.97/pdb/1j/1jltA/nostruct-align/1jltA.t2k-w0.5.mod(22): Reading nostruct-align/1jltA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc20-21488/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1j/1jltA/nostruct-align/1jltA.t2k-w0.5.mod (nostruct-align/1jltA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1j/1jltA/nostruct-align/1jltA.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.396671 /projects/compbio/experiments/models.97/pdb/1j/1jltB/nostruct-align/1jltB.t2k-w0.5.mod(22): Reading nostruct-align/1jltB.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc62-9316/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1j/1jltB/nostruct-align/1jltB.t2k-w0.5.mod (nostruct-align/1jltB.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1j/1jltB/nostruct-align/1jltB.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.383678 /projects/compbio/experiments/models.97/pdb/1u/1unkA/nostruct-align/1unkA.t2k-w0.5.mod(21): Reading nostruct-align/1unkA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc07-30725/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1u/1unkA/nostruct-align/1unkA.t2k-w0.5.mod (nostruct-align/1unkA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1u/1unkA/nostruct-align/1unkA.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.755692 /projects/compbio/experiments/models.97/pdb/1e/1exnA/nostruct-align/1exnA.t2k-w0.5.mod(22): Reading nostruct-align/1exnA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc11-31074/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1exnA/nostruct-align/1exnA.t2k-w0.5.mod (nostruct-align/1exnA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1exnA/nostruct-align/1exnA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.450670 /projects/compbio/experiments/models.97/pdb/1e/1exnB/nostruct-align/1exnB.t2k-w0.5.mod(22): Reading nostruct-align/1exnB.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc71-21482/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1exnB/nostruct-align/1exnB.t2k-w0.5.mod (nostruct-align/1exnB.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1exnB/nostruct-align/1exnB.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.309669 /projects/compbio/experiments/models.97/pdb/1k/1kapP/nostruct-align/1kapP.t2k-w0.5.mod(21): Reading nostruct-align/1kapP.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc87-30038/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1k/1kapP/nostruct-align/1kapP.t2k-w0.5.mod (nostruct-align/1kapP.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1k/1kapP/nostruct-align/1kapP.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.004675 /projects/compbio/experiments/models.97/pdb/1a/1a0fA/nostruct-align/1a0fA.t2k-w0.5.mod(21): Reading nostruct-align/1a0fA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc11-4251/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1a/1a0fA/nostruct-align/1a0fA.t2k-w0.5.mod (nostruct-align/1a0fA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1a/1a0fA/nostruct-align/1a0fA.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.112694 /projects/compbio/experiments/models.97/pdb/1n/1nsgB/nostruct-align/1nsgB.t2k-w0.5.mod(22): Reading nostruct-align/1nsgB.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc41-6344/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1n/1nsgB/nostruct-align/1nsgB.t2k-w0.5.mod (nostruct-align/1nsgB.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1n/1nsgB/nostruct-align/1nsgB.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.095680 /projects/compbio/experiments/models.97/pdb/1g/1gr8A/nostruct-align/1gr8A.t2k-w0.5.mod(22): Reading nostruct-align/1gr8A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc84-23656/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1g/1gr8A/nostruct-align/1gr8A.t2k-w0.5.mod (nostruct-align/1gr8A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1g/1gr8A/nostruct-align/1gr8A.t2k-w0.5.mod . Average NLL-Simple NULL score: -23.109695 /projects/compbio/experiments/models.97/pdb/2i/2ifo/nostruct-align/2ifo.t2k-w0.5.mod(21): Reading nostruct-align/2ifo.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc73-28016/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/2i/2ifo/nostruct-align/2ifo.t2k-w0.5.mod (nostruct-align/2ifo.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/2i/2ifo/nostruct-align/2ifo.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.211687 /projects/compbio/experiments/models.97/pdb/1l/1lliA/nostruct-align/1lliA.t2k-w0.5.mod(21): Reading nostruct-align/1lliA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc31-3083/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1l/1lliA/nostruct-align/1lliA.t2k-w0.5.mod (nostruct-align/1lliA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1l/1lliA/nostruct-align/1lliA.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.976685 /projects/compbio/experiments/models.97/pdb/1a/1al0B/nostruct-align/1al0B.t2k-w0.5.mod(21): Reading nostruct-align/1al0B.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc15-6580/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1a/1al0B/nostruct-align/1al0B.t2k-w0.5.mod (nostruct-align/1al0B.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1a/1al0B/nostruct-align/1al0B.t2k-w0.5.mod . Average NLL-Simple NULL score: -16.300671 /projects/compbio/experiments/models.97/pdb/1i/1iieA/nostruct-align/1iieA.t2k-w0.5.mod(21): Reading nostruct-align/1iieA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc56-17643/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1i/1iieA/nostruct-align/1iieA.t2k-w0.5.mod (nostruct-align/1iieA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1i/1iieA/nostruct-align/1iieA.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.670696 /projects/compbio/experiments/models.97/pdb/1i/1i6cA/nostruct-align/1i6cA.t2k-w0.5.mod(21): Reading nostruct-align/1i6cA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc57-32659/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1i/1i6cA/nostruct-align/1i6cA.t2k-w0.5.mod (nostruct-align/1i6cA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1i/1i6cA/nostruct-align/1i6cA.t2k-w0.5.mod . Average NLL-Simple NULL score: -16.023682 /projects/compbio/experiments/models.97/pdb/1c/1cxzB/nostruct-align/1cxzB.t2k-w0.5.mod(22): Reading nostruct-align/1cxzB.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc50-14883/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1c/1cxzB/nostruct-align/1cxzB.t2k-w0.5.mod (nostruct-align/1cxzB.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1c/1cxzB/nostruct-align/1cxzB.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.143690 /projects/compbio/experiments/models.97/pdb/1a/1al0F/nostruct-align/1al0F.t2k-w0.5.mod(21): Reading nostruct-align/1al0F.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc84-15634/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1a/1al0F/nostruct-align/1al0F.t2k-w0.5.mod (nostruct-align/1al0F.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1a/1al0F/nostruct-align/1al0F.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.086672 /projects/compbio/experiments/models.97/pdb/1k/1kwmA/nostruct-align/1kwmA.t2k-w0.5.mod(22): Reading nostruct-align/1kwmA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc32-14473/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1k/1kwmA/nostruct-align/1kwmA.t2k-w0.5.mod (nostruct-align/1kwmA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1k/1kwmA/nostruct-align/1kwmA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.970695 /projects/compbio/experiments/models.97/pdb/1q/1qi7A/nostruct-align/1qi7A.t2k-w0.5.mod(21): Reading nostruct-align/1qi7A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc55-14772/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1q/1qi7A/nostruct-align/1qi7A.t2k-w0.5.mod (nostruct-align/1qi7A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1q/1qi7A/nostruct-align/1qi7A.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.699680 /projects/compbio/experiments/models.97/pdb/1a/1al0G/nostruct-align/1al0G.t2k-w0.5.mod(21): Reading nostruct-align/1al0G.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc57-3572/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1a/1al0G/nostruct-align/1al0G.t2k-w0.5.mod (nostruct-align/1al0G.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1a/1al0G/nostruct-align/1al0G.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.024698 /projects/compbio/experiments/models.97/pdb/1j/1jekA/nostruct-align/1jekA.t2k-w0.5.mod(22): Reading nostruct-align/1jekA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc65-30404/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1j/1jekA/nostruct-align/1jekA.t2k-w0.5.mod (nostruct-align/1jekA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1j/1jekA/nostruct-align/1jekA.t2k-w0.5.mod . Average NLL-Simple NULL score: -16.339691 /projects/compbio/experiments/models.97/pdb/1j/1jekB/nostruct-align/1jekB.t2k-w0.5.mod(22): Reading nostruct-align/1jekB.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc28-7402/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1j/1jekB/nostruct-align/1jekB.t2k-w0.5.mod (nostruct-align/1jekB.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1j/1jekB/nostruct-align/1jekB.t2k-w0.5.mod . Average NLL-Simple NULL score: -15.841676 /projects/compbio/experiments/models.97/pdb/1e/1exg/nostruct-align/1exg.t2k-w0.5.mod(21): Reading nostruct-align/1exg.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc43-9771/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1exg/nostruct-align/1exg.t2k-w0.5.mod (nostruct-align/1exg.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1exg/nostruct-align/1exg.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.547693 /projects/compbio/experiments/models.97/pdb/1g/1g6oA/nostruct-align/1g6oA.t2k-w0.5.mod(22): Reading nostruct-align/1g6oA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc49-2899/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1g/1g6oA/nostruct-align/1g6oA.t2k-w0.5.mod (nostruct-align/1g6oA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1g/1g6oA/nostruct-align/1g6oA.t2k-w0.5.mod . Average NLL-Simple NULL score: -25.794693 /projects/compbio/experiments/models.97/pdb/1k/1k77A/nostruct-align/1k77A.t2k-w0.5.mod(22): Reading nostruct-align/1k77A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc35-4735/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1k/1k77A/nostruct-align/1k77A.t2k-w0.5.mod (nostruct-align/1k77A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1k/1k77A/nostruct-align/1k77A.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.852694 /projects/compbio/experiments/models.97/pdb/1d/1dfmA/nostruct-align/1dfmA.t2k-w0.5.mod(22): Reading nostruct-align/1dfmA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc50-15070/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1d/1dfmA/nostruct-align/1dfmA.t2k-w0.5.mod (nostruct-align/1dfmA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1d/1dfmA/nostruct-align/1dfmA.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.977690 /projects/compbio/experiments/models.97/pdb/2i/2igd/nostruct-align/2igd.t2k-w0.5.mod(22): Reading nostruct-align/2igd.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc28-3956/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/2i/2igd/nostruct-align/2igd.t2k-w0.5.mod (nostruct-align/2igd.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/2i/2igd/nostruct-align/2igd.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.002697 /projects/compbio/experiments/models.97/pdb/1h/1hg5A/nostruct-align/1hg5A.t2k-w0.5.mod(21): Reading nostruct-align/1hg5A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc65-31551/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1h/1hg5A/nostruct-align/1hg5A.t2k-w0.5.mod (nostruct-align/1hg5A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1h/1hg5A/nostruct-align/1hg5A.t2k-w0.5.mod . Average NLL-Simple NULL score: -22.757690 /projects/compbio/experiments/models.97/pdb/1m/1mai/nostruct-align/1mai.t2k-w0.5.mod(22): Reading nostruct-align/1mai.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc46-4630/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1m/1mai/nostruct-align/1mai.t2k-w0.5.mod (nostruct-align/1mai.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1m/1mai/nostruct-align/1mai.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.553677 /projects/compbio/experiments/models.97/pdb/1m/1mak/nostruct-align/1mak.t2k-w0.5.mod(21): Reading nostruct-align/1mak.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc62-8684/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1m/1mak/nostruct-align/1mak.t2k-w0.5.mod (nostruct-align/1mak.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1m/1mak/nostruct-align/1mak.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.044676 /projects/compbio/experiments/models.97/pdb/1e/1ed1A/nostruct-align/1ed1A.t2k-w0.5.mod(22): Reading nostruct-align/1ed1A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc38-10140/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1ed1A/nostruct-align/1ed1A.t2k-w0.5.mod (nostruct-align/1ed1A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1ed1A/nostruct-align/1ed1A.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.152683 /projects/compbio/experiments/models.97/pdb/5e/5eat/nostruct-align/5eat.t2k-w0.5.mod(21): Reading nostruct-align/5eat.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc53-26778/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/5e/5eat/nostruct-align/5eat.t2k-w0.5.mod (nostruct-align/5eat.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/5e/5eat/nostruct-align/5eat.t2k-w0.5.mod . Average NLL-Simple NULL score: -22.828680 /projects/compbio/experiments/models.97/pdb/4k/4kbpA/nostruct-align/4kbpA.t2k-w0.5.mod(22): Reading nostruct-align/4kbpA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc49-4552/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/4k/4kbpA/nostruct-align/4kbpA.t2k-w0.5.mod (nostruct-align/4kbpA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/4k/4kbpA/nostruct-align/4kbpA.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.984690 /projects/compbio/experiments/models.97/pdb/1m/1mal/nostruct-align/1mal.t2k-w0.5.mod(21): Reading nostruct-align/1mal.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc82-17704/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1m/1mal/nostruct-align/1mal.t2k-w0.5.mod (nostruct-align/1mal.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1m/1mal/nostruct-align/1mal.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.407688 /projects/compbio/experiments/models.97/pdb/1c/1cqqA/nostruct-align/1cqqA.t2k-w0.5.mod(22): Reading nostruct-align/1cqqA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc74-11004/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1c/1cqqA/nostruct-align/1cqqA.t2k-w0.5.mod (nostruct-align/1cqqA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1c/1cqqA/nostruct-align/1cqqA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.619671 /projects/compbio/experiments/models.97/pdb/4p/4pep/nostruct-align/4pep.t2k-w0.5.mod(22): Reading nostruct-align/4pep.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc43-25167/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/4p/4pep/nostruct-align/4pep.t2k-w0.5.mod (nostruct-align/4pep.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/4p/4pep/nostruct-align/4pep.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.447674 /projects/compbio/experiments/models.97/pdb/5e/5eau/nostruct-align/5eau.t2k-w0.5.mod(22): Reading nostruct-align/5eau.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc86-9548/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/5e/5eau/nostruct-align/5eau.t2k-w0.5.mod (nostruct-align/5eau.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/5e/5eau/nostruct-align/5eau.t2k-w0.5.mod . Average NLL-Simple NULL score: -22.713675 /projects/compbio/experiments/models.97/pdb/1d/1dmwA/nostruct-align/1dmwA.t2k-w0.5.mod(21): Reading nostruct-align/1dmwA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc09-27398/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1d/1dmwA/nostruct-align/1dmwA.t2k-w0.5.mod (nostruct-align/1dmwA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1d/1dmwA/nostruct-align/1dmwA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.594673 /projects/compbio/experiments/models.97/pdb/1a/1ajsA/nostruct-align/1ajsA.t2k-w0.5.mod(22): Reading nostruct-align/1ajsA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc71-26637/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1a/1ajsA/nostruct-align/1ajsA.t2k-w0.5.mod (nostruct-align/1ajsA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1a/1ajsA/nostruct-align/1ajsA.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.990698 /projects/compbio/experiments/models.97/pdb/1l/1l9hA/nostruct-align/1l9hA.t2k-w0.5.mod(22): Reading nostruct-align/1l9hA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc86-31146/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1l/1l9hA/nostruct-align/1l9hA.t2k-w0.5.mod (nostruct-align/1l9hA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1l/1l9hA/nostruct-align/1l9hA.t2k-w0.5.mod . Average NLL-Simple NULL score: -26.070677 /projects/compbio/experiments/models.97/pdb/1m/1mat/nostruct-align/1mat.t2k-w0.5.mod(21): Reading nostruct-align/1mat.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc16-8474/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1m/1mat/nostruct-align/1mat.t2k-w0.5.mod (nostruct-align/1mat.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1m/1mat/nostruct-align/1mat.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.092678 /projects/compbio/experiments/models.97/pdb/1m/1maz/nostruct-align/1maz.t2k-w0.5.mod(21): Reading nostruct-align/1maz.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc69-24024/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1m/1maz/nostruct-align/1maz.t2k-w0.5.mod (nostruct-align/1maz.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1m/1maz/nostruct-align/1maz.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.602692 /projects/compbio/experiments/models.97/pdb/1k/1kc0A/nostruct-align/1kc0A.t2k-w0.5.mod(22): Reading nostruct-align/1kc0A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc55-29313/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1k/1kc0A/nostruct-align/1kc0A.t2k-w0.5.mod (nostruct-align/1kc0A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1k/1kc0A/nostruct-align/1kc0A.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.719688 /projects/compbio/experiments/models.97/pdb/1e/1eqfA/nostruct-align/1eqfA.t2k-w0.5.mod(21): Reading nostruct-align/1eqfA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc86-11478/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1eqfA/nostruct-align/1eqfA.t2k-w0.5.mod (nostruct-align/1eqfA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1eqfA/nostruct-align/1eqfA.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.960697 /projects/compbio/experiments/models.97/pdb/1h/1htjF/nostruct-align/1htjF.t2k-w0.5.mod(22): Reading nostruct-align/1htjF.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc71-21672/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1h/1htjF/nostruct-align/1htjF.t2k-w0.5.mod (nostruct-align/1htjF.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1h/1htjF/nostruct-align/1htjF.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.190670 /projects/compbio/experiments/models.97/pdb/1j/1jlvA/nostruct-align/1jlvA.t2k-w0.5.mod(22): Reading nostruct-align/1jlvA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc76-876/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1j/1jlvA/nostruct-align/1jlvA.t2k-w0.5.mod (nostruct-align/1jlvA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1j/1jlvA/nostruct-align/1jlvA.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.316681 /projects/compbio/experiments/models.97/pdb/1m/1mba/nostruct-align/1mba.t2k-w0.5.mod(21): Reading nostruct-align/1mba.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc07-6713/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1m/1mba/nostruct-align/1mba.t2k-w0.5.mod (nostruct-align/1mba.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1m/1mba/nostruct-align/1mba.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.600674 /projects/compbio/experiments/models.97/pdb/1m/1mbd/nostruct-align/1mbd.t2k-w0.5.mod(21): Reading nostruct-align/1mbd.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc46-31602/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1m/1mbd/nostruct-align/1mbd.t2k-w0.5.mod (nostruct-align/1mbd.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1m/1mbd/nostruct-align/1mbd.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.466673 /projects/compbio/experiments/models.97/pdb/1a/1ayfA/nostruct-align/1ayfA.t2k-w0.5.mod(22): Reading nostruct-align/1ayfA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc29-25460/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1a/1ayfA/nostruct-align/1ayfA.t2k-w0.5.mod (nostruct-align/1ayfA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1a/1ayfA/nostruct-align/1ayfA.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.596685 /projects/compbio/experiments/models.97/pdb/1m/1mbe/nostruct-align/1mbe.t2k-w0.5.mod(21): Reading nostruct-align/1mbe.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc58-13517/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1m/1mbe/nostruct-align/1mbe.t2k-w0.5.mod (nostruct-align/1mbe.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1m/1mbe/nostruct-align/1mbe.t2k-w0.5.mod . Average NLL-Simple NULL score: -16.645695 /projects/compbio/experiments/models.97/pdb/1a/1ayfB/nostruct-align/1ayfB.t2k-w0.5.mod(21): Reading nostruct-align/1ayfB.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc72-31595/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1a/1ayfB/nostruct-align/1ayfB.t2k-w0.5.mod (nostruct-align/1ayfB.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1a/1ayfB/nostruct-align/1ayfB.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.703671 /projects/compbio/experiments/models.97/pdb/1k/1k78A/nostruct-align/1k78A.t2k-w0.5.mod(22): Reading nostruct-align/1k78A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc44-3033/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1k/1k78A/nostruct-align/1k78A.t2k-w0.5.mod (nostruct-align/1k78A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1k/1k78A/nostruct-align/1k78A.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.676683 /projects/compbio/experiments/models.97/pdb/1d/1dfnA/nostruct-align/1dfnA.t2k-w0.5.mod(22): Reading nostruct-align/1dfnA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc66-22540/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1d/1dfnA/nostruct-align/1dfnA.t2k-w0.5.mod (nostruct-align/1dfnA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1d/1dfnA/nostruct-align/1dfnA.t2k-w0.5.mod . Average NLL-Simple NULL score: -15.209682 /projects/compbio/experiments/models.97/pdb/4p/4pfk/nostruct-align/4pfk.t2k-w0.5.mod(21): Reading nostruct-align/4pfk.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc99-19227/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/4p/4pfk/nostruct-align/4pfk.t2k-w0.5.mod (nostruct-align/4pfk.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/4p/4pfk/nostruct-align/4pfk.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.139675 /projects/compbio/experiments/models.97/pdb/1a/1a0hA/nostruct-align/1a0hA.t2k-w0.5.mod(21): Reading nostruct-align/1a0hA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc36-24612/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1a/1a0hA/nostruct-align/1a0hA.t2k-w0.5.mod (nostruct-align/1a0hA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1a/1a0hA/nostruct-align/1a0hA.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.143696 /projects/compbio/experiments/models.97/pdb/1p/1pdkB/nostruct-align/1pdkB.t2k-w0.5.mod(22): Reading nostruct-align/1pdkB.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc51-29234/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1p/1pdkB/nostruct-align/1pdkB.t2k-w0.5.mod (nostruct-align/1pdkB.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1p/1pdkB/nostruct-align/1pdkB.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.554670 /projects/compbio/experiments/models.97/pdb/1c/1cs0B/nostruct-align/1cs0B.t2k-w0.5.mod(22): Reading nostruct-align/1cs0B.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc62-3499/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1c/1cs0B/nostruct-align/1cs0B.t2k-w0.5.mod (nostruct-align/1cs0B.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1c/1cs0B/nostruct-align/1cs0B.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.140673 /projects/compbio/experiments/models.97/pdb/1t/1tle/nostruct-align/1tle.t2k-w0.5.mod(21): Reading nostruct-align/1tle.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc74-4339/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1t/1tle/nostruct-align/1tle.t2k-w0.5.mod (nostruct-align/1tle.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1t/1tle/nostruct-align/1tle.t2k-w0.5.mod . Average NLL-Simple NULL score: -15.989695 /projects/compbio/experiments/models.97/pdb/1c/1cs0C/nostruct-align/1cs0C.t2k-w0.5.mod(21): Reading nostruct-align/1cs0C.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc15-18274/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1c/1cs0C/nostruct-align/1cs0C.t2k-w0.5.mod (nostruct-align/1cs0C.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1c/1cs0C/nostruct-align/1cs0C.t2k-w0.5.mod . Average NLL-Simple NULL score: -23.398678 /projects/compbio/experiments/models.97/pdb/1k/1kpeA/nostruct-align/1kpeA.t2k-w0.5.mod(21): Reading nostruct-align/1kpeA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc82-26217/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1k/1kpeA/nostruct-align/1kpeA.t2k-w0.5.mod (nostruct-align/1kpeA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1k/1kpeA/nostruct-align/1kpeA.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.099691 /projects/compbio/experiments/models.97/pdb/2i/2ihl/nostruct-align/2ihl.t2k-w0.5.mod(21): Reading nostruct-align/2ihl.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc67-32374/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/2i/2ihl/nostruct-align/2ihl.t2k-w0.5.mod (nostruct-align/2ihl.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/2i/2ihl/nostruct-align/2ihl.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.154680 /projects/compbio/experiments/models.97/pdb/1d/1do6A/nostruct-align/1do6A.t2k-w0.5.mod(21): Reading nostruct-align/1do6A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc20-23915/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1d/1do6A/nostruct-align/1do6A.t2k-w0.5.mod (nostruct-align/1do6A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1d/1do6A/nostruct-align/1do6A.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.665689 /projects/compbio/experiments/models.97/pdb/2p/2prd/nostruct-align/2prd.t2k-w0.5.mod(21): Reading nostruct-align/2prd.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc47-12646/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/2p/2prd/nostruct-align/2prd.t2k-w0.5.mod (nostruct-align/2prd.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/2p/2prd/nostruct-align/2prd.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.125683 /projects/compbio/experiments/models.97/pdb/1t/1tlk/nostruct-align/1tlk.t2k-w0.5.mod(21): Reading nostruct-align/1tlk.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc38-9335/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1t/1tlk/nostruct-align/1tlk.t2k-w0.5.mod (nostruct-align/1tlk.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1t/1tlk/nostruct-align/1tlk.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.134695 /projects/compbio/experiments/models.97/pdb/2p/2prk/nostruct-align/2prk.t2k-w0.5.mod(21): Reading nostruct-align/2prk.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc39-25564/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/2p/2prk/nostruct-align/2prk.t2k-w0.5.mod (nostruct-align/2prk.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/2p/2prk/nostruct-align/2prk.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.436686 /projects/compbio/experiments/models.97/pdb/1g/1g6q2/nostruct-align/1g6q2.t2k-w0.5.mod(21): Reading nostruct-align/1g6q2.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc19-8981/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1g/1g6q2/nostruct-align/1g6q2.t2k-w0.5.mod (nostruct-align/1g6q2.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1g/1g6q2/nostruct-align/1g6q2.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.351698 /projects/compbio/experiments/models.97/pdb/1q/1qi9A/nostruct-align/1qi9A.t2k-w0.5.mod(22): Reading nostruct-align/1qi9A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc42-24976/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1q/1qi9A/nostruct-align/1qi9A.t2k-w0.5.mod (nostruct-align/1qi9A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1q/1qi9A/nostruct-align/1qi9A.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.286671 /projects/compbio/experiments/models.97/pdb/1f/1f3aA/nostruct-align/1f3aA.t2k-w0.5.mod(21): Reading nostruct-align/1f3aA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc23-27923/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1f3aA/nostruct-align/1f3aA.t2k-w0.5.mod (nostruct-align/1f3aA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1f3aA/nostruct-align/1f3aA.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.689678 /projects/compbio/experiments/models.97/pdb/1t/1tn3/nostruct-align/1tn3.t2k-w0.5.mod(21): Reading nostruct-align/1tn3.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc71-9538/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1t/1tn3/nostruct-align/1tn3.t2k-w0.5.mod (nostruct-align/1tn3.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1t/1tn3/nostruct-align/1tn3.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.525694 /projects/compbio/experiments/models.97/pdb/1b/1bncA/nostruct-align/1bncA.t2k-w0.5.mod(21): Reading nostruct-align/1bncA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc51-10431/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1b/1bncA/nostruct-align/1bncA.t2k-w0.5.mod (nostruct-align/1bncA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1b/1bncA/nostruct-align/1bncA.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.238695 /projects/compbio/experiments/models.97/pdb/1b/1bncB/nostruct-align/1bncB.t2k-w0.5.mod(21): Reading nostruct-align/1bncB.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc02-17708/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1b/1bncB/nostruct-align/1bncB.t2k-w0.5.mod (nostruct-align/1bncB.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1b/1bncB/nostruct-align/1bncB.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.117689 /projects/compbio/experiments/models.97/pdb/1j/1jn5A/nostruct-align/1jn5A.t2k-w0.5.mod(21): Reading nostruct-align/1jn5A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc36-28422/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1j/1jn5A/nostruct-align/1jn5A.t2k-w0.5.mod (nostruct-align/1jn5A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1j/1jn5A/nostruct-align/1jn5A.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.856697 /projects/compbio/experiments/models.97/pdb/1j/1jn5B/nostruct-align/1jn5B.t2k-w0.5.mod(21): Reading nostruct-align/1jn5B.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc31-17585/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1j/1jn5B/nostruct-align/1jn5B.t2k-w0.5.mod (nostruct-align/1jn5B.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1j/1jn5B/nostruct-align/1jn5B.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.364674 /projects/compbio/experiments/models.97/pdb/1e/1ezm/nostruct-align/1ezm.t2k-w0.5.mod(22): Reading nostruct-align/1ezm.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc36-16555/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1ezm/nostruct-align/1ezm.t2k-w0.5.mod (nostruct-align/1ezm.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1ezm/nostruct-align/1ezm.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.101683 /projects/compbio/experiments/models.97/pdb/1g/1gk1B/nostruct-align/1gk1B.t2k-w0.5.mod(22): Reading nostruct-align/1gk1B.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc57-21418/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1g/1gk1B/nostruct-align/1gk1B.t2k-w0.5.mod (nostruct-align/1gk1B.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1g/1gk1B/nostruct-align/1gk1B.t2k-w0.5.mod . Average NLL-Simple NULL score: -22.810675 /projects/compbio/experiments/models.97/pdb/1e/1exqA/nostruct-align/1exqA.t2k-w0.5.mod(21): Reading nostruct-align/1exqA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc20-16275/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1exqA/nostruct-align/1exqA.t2k-w0.5.mod (nostruct-align/1exqA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1exqA/nostruct-align/1exqA.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.213697 /projects/compbio/experiments/models.97/pdb/1d/1dfoA/nostruct-align/1dfoA.t2k-w0.5.mod(22): Reading nostruct-align/1dfoA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc11-2535/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1d/1dfoA/nostruct-align/1dfoA.t2k-w0.5.mod (nostruct-align/1dfoA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1d/1dfoA/nostruct-align/1dfoA.t2k-w0.5.mod . Average NLL-Simple NULL score: -24.685677 /projects/compbio/experiments/models.97/pdb/1h/1hg7A/nostruct-align/1hg7A.t2k-w0.5.mod(22): Reading nostruct-align/1hg7A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc39-12570/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1h/1hg7A/nostruct-align/1hg7A.t2k-w0.5.mod (nostruct-align/1hg7A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1h/1hg7A/nostruct-align/1hg7A.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.317677 /projects/compbio/experiments/models.97/pdb/1f/1fv5A/nostruct-align/1fv5A.t2k-w0.5.mod(21): Reading nostruct-align/1fv5A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc39-5423/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1fv5A/nostruct-align/1fv5A.t2k-w0.5.mod (nostruct-align/1fv5A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1fv5A/nostruct-align/1fv5A.t2k-w0.5.mod . Average NLL-Simple NULL score: -15.691689 /projects/compbio/experiments/models.97/pdb/1e/1ebuA/nostruct-align/1ebuA.t2k-w0.5.mod(21): Reading nostruct-align/1ebuA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc66-9571/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1ebuA/nostruct-align/1ebuA.t2k-w0.5.mod (nostruct-align/1ebuA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1ebuA/nostruct-align/1ebuA.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.224676 /projects/compbio/experiments/models.97/pdb/1c/1cs1A/nostruct-align/1cs1A.t2k-w0.5.mod(22): Reading nostruct-align/1cs1A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc51-15214/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1c/1cs1A/nostruct-align/1cs1A.t2k-w0.5.mod (nostruct-align/1cs1A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1c/1cs1A/nostruct-align/1cs1A.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.529697 /projects/compbio/experiments/models.97/pdb/1s/1sgpE/nostruct-align/1sgpE.t2k-w0.5.mod(21): Reading nostruct-align/1sgpE.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc77-4996/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1s/1sgpE/nostruct-align/1sgpE.t2k-w0.5.mod (nostruct-align/1sgpE.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1s/1sgpE/nostruct-align/1sgpE.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.390682 /projects/compbio/experiments/models.97/pdb/1c/1cs1C/nostruct-align/1cs1C.t2k-w0.5.mod(22): Reading nostruct-align/1cs1C.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc39-29887/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1c/1cs1C/nostruct-align/1cs1C.t2k-w0.5.mod (nostruct-align/1cs1C.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1c/1cs1C/nostruct-align/1cs1C.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.962690 /projects/compbio/experiments/models.97/pdb/1q/1qb0A/nostruct-align/1qb0A.t2k-w0.5.mod(22): Reading nostruct-align/1qb0A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc44-1060/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1q/1qb0A/nostruct-align/1qb0A.t2k-w0.5.mod (nostruct-align/1qb0A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1q/1qb0A/nostruct-align/1qb0A.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.553692 /projects/compbio/experiments/models.97/pdb/1s/1sgpI/nostruct-align/1sgpI.t2k-w0.5.mod(22): Reading nostruct-align/1sgpI.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc87-2011/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1s/1sgpI/nostruct-align/1sgpI.t2k-w0.5.mod (nostruct-align/1sgpI.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1s/1sgpI/nostruct-align/1sgpI.t2k-w0.5.mod . Average NLL-Simple NULL score: -15.718691 /projects/compbio/experiments/models.97/pdb/3p/3pvaA/nostruct-align/3pvaA.t2k-w0.5.mod(21): Reading nostruct-align/3pvaA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc11-4538/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/3p/3pvaA/nostruct-align/3pvaA.t2k-w0.5.mod (nostruct-align/3pvaA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/3p/3pvaA/nostruct-align/3pvaA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.108685 /projects/compbio/experiments/models.97/pdb/1t/1tml/nostruct-align/1tml.t2k-w0.5.mod(21): Reading nostruct-align/1tml.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc70-22598/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1t/1tml/nostruct-align/1tml.t2k-w0.5.mod (nostruct-align/1tml.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1t/1tml/nostruct-align/1tml.t2k-w0.5.mod . Average NLL-Simple NULL score: -22.066700 /projects/compbio/experiments/models.97/pdb/1b/1bh9A/nostruct-align/1bh9A.t2k-w0.5.mod(22): Reading nostruct-align/1bh9A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc61-1451/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1b/1bh9A/nostruct-align/1bh9A.t2k-w0.5.mod (nostruct-align/1bh9A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1b/1bh9A/nostruct-align/1bh9A.t2k-w0.5.mod . Average NLL-Simple NULL score: -16.753683 /projects/compbio/experiments/models.97/pdb/1b/1bh9B/nostruct-align/1bh9B.t2k-w0.5.mod(22): Reading nostruct-align/1bh9B.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc18-14280/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1b/1bh9B/nostruct-align/1bh9B.t2k-w0.5.mod (nostruct-align/1bh9B.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1b/1bh9B/nostruct-align/1bh9B.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.216692 /projects/compbio/experiments/models.97/pdb/1b/1b57A/nostruct-align/1b57A.t2k-w0.5.mod(22): Reading nostruct-align/1b57A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc72-31136/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1b/1b57A/nostruct-align/1b57A.t2k-w0.5.mod (nostruct-align/1b57A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1b/1b57A/nostruct-align/1b57A.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.266699 /projects/compbio/experiments/models.97/pdb/1j/1jenA/nostruct-align/1jenA.t2k-w0.5.mod(21): Reading nostruct-align/1jenA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc75-19137/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1j/1jenA/nostruct-align/1jenA.t2k-w0.5.mod (nostruct-align/1jenA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1j/1jenA/nostruct-align/1jenA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.879677 /projects/compbio/experiments/models.97/pdb/1j/1jenB/nostruct-align/1jenB.t2k-w0.5.mod(21): Reading nostruct-align/1jenB.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc83-24831/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1j/1jenB/nostruct-align/1jenB.t2k-w0.5.mod (nostruct-align/1jenB.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1j/1jenB/nostruct-align/1jenB.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.221678 /projects/compbio/experiments/models.97/pdb/1b/1bndA/nostruct-align/1bndA.t2k-w0.5.mod(21): Reading nostruct-align/1bndA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc59-26728/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1b/1bndA/nostruct-align/1bndA.t2k-w0.5.mod (nostruct-align/1bndA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1b/1bndA/nostruct-align/1bndA.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.148674 /projects/compbio/experiments/models.97/pdb/1t/1tmy/nostruct-align/1tmy.t2k-w0.5.mod(21): Reading nostruct-align/1tmy.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc83-24157/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1t/1tmy/nostruct-align/1tmy.t2k-w0.5.mod (nostruct-align/1tmy.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1t/1tmy/nostruct-align/1tmy.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.759684 /projects/compbio/experiments/models.97/pdb/1j/1jlxA/nostruct-align/1jlxA.t2k-w0.5.mod(21): Reading nostruct-align/1jlxA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc74-2817/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1j/1jlxA/nostruct-align/1jlxA.t2k-w0.5.mod (nostruct-align/1jlxA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1j/1jlxA/nostruct-align/1jlxA.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.578686 /projects/compbio/experiments/models.97/pdb/1m/1mdc/nostruct-align/1mdc.t2k-w0.5.mod(22): Reading nostruct-align/1mdc.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc53-5039/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1m/1mdc/nostruct-align/1mdc.t2k-w0.5.mod (nostruct-align/1mdc.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1m/1mdc/nostruct-align/1mdc.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.032675 /projects/compbio/experiments/models.97/pdb/2g/2gp8A/nostruct-align/2gp8A.t2k-w0.5.mod(21): Reading nostruct-align/2gp8A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc67-21780/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/2g/2gp8A/nostruct-align/2gp8A.t2k-w0.5.mod (nostruct-align/2gp8A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/2g/2gp8A/nostruct-align/2gp8A.t2k-w0.5.mod . Average NLL-Simple NULL score: -16.053696 /projects/compbio/experiments/models.97/pdb/1e/1ez0A/nostruct-align/1ez0A.t2k-w0.5.mod(22): Reading nostruct-align/1ez0A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc63-28649/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1ez0A/nostruct-align/1ez0A.t2k-w0.5.mod (nostruct-align/1ez0A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1ez0A/nostruct-align/1ez0A.t2k-w0.5.mod . Average NLL-Simple NULL score: -24.451687 /projects/compbio/experiments/models.97/pdb/1e/1exrA/nostruct-align/1exrA.t2k-w0.5.mod(21): Reading nostruct-align/1exrA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc32-21671/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1exrA/nostruct-align/1exrA.t2k-w0.5.mod (nostruct-align/1exrA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1exrA/nostruct-align/1exrA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.160686 /projects/compbio/experiments/models.97/pdb/1h/1hg8A/nostruct-align/1hg8A.t2k-w0.5.mod(22): Reading nostruct-align/1hg8A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc25-23862/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1h/1hg8A/nostruct-align/1hg8A.t2k-w0.5.mod (nostruct-align/1hg8A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1h/1hg8A/nostruct-align/1hg8A.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.879681 /projects/compbio/experiments/models.97/pdb/1b/1bunB/nostruct-align/1bunB.t2k-w0.5.mod(21): Reading nostruct-align/1bunB.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc23-24685/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1b/1bunB/nostruct-align/1bunB.t2k-w0.5.mod (nostruct-align/1bunB.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1b/1bunB/nostruct-align/1bunB.t2k-w0.5.mod . Average NLL-Simple NULL score: -16.361694 /projects/compbio/experiments/models.97/pdb/1j/1jtaA/nostruct-align/1jtaA.t2k-w0.5.mod(22): Reading nostruct-align/1jtaA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc74-31566/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1j/1jtaA/nostruct-align/1jtaA.t2k-w0.5.mod (nostruct-align/1jtaA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1j/1jtaA/nostruct-align/1jtaA.t2k-w0.5.mod . Average NLL-Simple NULL score: -22.033684 /projects/compbio/experiments/models.97/pdb/1a/1a0jA/nostruct-align/1a0jA.t2k-w0.5.mod(21): Reading nostruct-align/1a0jA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc28-2484/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1a/1a0jA/nostruct-align/1a0jA.t2k-w0.5.mod (nostruct-align/1a0jA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1a/1a0jA/nostruct-align/1a0jA.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.393688 /projects/compbio/experiments/models.97/pdb/1m/1mdl/nostruct-align/1mdl.t2k-w0.5.mod(22): Reading nostruct-align/1mdl.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc22-3332/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1m/1mdl/nostruct-align/1mdl.t2k-w0.5.mod (nostruct-align/1mdl.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1m/1mdl/nostruct-align/1mdl.t2k-w0.5.mod . Average NLL-Simple NULL score: -23.221693 /projects/compbio/experiments/models.97/pdb/1e/1e12A/nostruct-align/1e12A.t2k-w0.5.mod(21): Reading nostruct-align/1e12A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc49-29421/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1e12A/nostruct-align/1e12A.t2k-w0.5.mod (nostruct-align/1e12A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1e12A/nostruct-align/1e12A.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.233694 /projects/compbio/experiments/models.97/pdb/2p/2pta/nostruct-align/2pta.t2k-w0.5.mod(21): Reading nostruct-align/2pta.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc23-17191/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/2p/2pta/nostruct-align/2pta.t2k-w0.5.mod (nostruct-align/2pta.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/2p/2pta/nostruct-align/2pta.t2k-w0.5.mod . Average NLL-Simple NULL score: -15.127670 /projects/compbio/experiments/models.97/pdb/1k/1kpgA/nostruct-align/1kpgA.t2k-w0.5.mod(22): Reading nostruct-align/1kpgA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc72-2105/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1k/1kpgA/nostruct-align/1kpgA.t2k-w0.5.mod (nostruct-align/1kpgA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1k/1kpgA/nostruct-align/1kpgA.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.519676 /projects/compbio/experiments/models.97/pdb/2b/2bb2/nostruct-align/2bb2.t2k-w0.5.mod(21): Reading nostruct-align/2bb2.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc87-25265/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/2b/2bb2/nostruct-align/2bb2.t2k-w0.5.mod (nostruct-align/2bb2.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/2b/2bb2/nostruct-align/2bb2.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.315670 /projects/compbio/experiments/models.97/pdb/1d/1dmzA/nostruct-align/1dmzA.t2k-w0.5.mod(21): Reading nostruct-align/1dmzA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc19-32446/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1d/1dmzA/nostruct-align/1dmzA.t2k-w0.5.mod (nostruct-align/1dmzA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1d/1dmzA/nostruct-align/1dmzA.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.155689 /projects/compbio/experiments/models.97/pdb/2p/2ptd/nostruct-align/2ptd.t2k-w0.5.mod(21): Reading nostruct-align/2ptd.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc54-13176/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/2p/2ptd/nostruct-align/2ptd.t2k-w0.5.mod (nostruct-align/2ptd.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/2p/2ptd/nostruct-align/2ptd.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.783684 /projects/compbio/experiments/models.97/pdb/1h/1hmcA/nostruct-align/1hmcA.t2k-w0.5.mod(21): Reading nostruct-align/1hmcA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc24-28383/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1h/1hmcA/nostruct-align/1hmcA.t2k-w0.5.mod (nostruct-align/1hmcA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1h/1hmcA/nostruct-align/1hmcA.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.698669 /projects/compbio/experiments/models.97/pdb/1h/1hmcB/nostruct-align/1hmcB.t2k-w0.5.mod(21): Reading nostruct-align/1hmcB.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc50-2407/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1h/1hmcB/nostruct-align/1hmcB.t2k-w0.5.mod (nostruct-align/1hmcB.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1h/1hmcB/nostruct-align/1hmcB.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.683693 /projects/compbio/experiments/models.97/pdb/1a/1a7tA/nostruct-align/1a7tA.t2k-w0.5.mod(21): Reading nostruct-align/1a7tA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc20-24174/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1a/1a7tA/nostruct-align/1a7tA.t2k-w0.5.mod (nostruct-align/1a7tA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1a/1a7tA/nostruct-align/1a7tA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.733698 /projects/compbio/experiments/models.97/pdb/1a/1a92A/nostruct-align/1a92A.t2k-w0.5.mod(21): Reading nostruct-align/1a92A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc73-9216/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1a/1a92A/nostruct-align/1a92A.t2k-w0.5.mod (nostruct-align/1a92A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1a/1a92A/nostruct-align/1a92A.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.090685 /projects/compbio/experiments/models.97/pdb/2p/2pth/nostruct-align/2pth.t2k-w0.5.mod(22): Reading nostruct-align/2pth.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc35-28547/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/2p/2pth/nostruct-align/2pth.t2k-w0.5.mod (nostruct-align/2pth.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/2p/2pth/nostruct-align/2pth.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.554689 /projects/compbio/experiments/models.97/pdb/2b/2bb8/nostruct-align/2bb8.t2k-w0.5.mod(21): Reading nostruct-align/2bb8.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc56-17770/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/2b/2bb8/nostruct-align/2bb8.t2k-w0.5.mod (nostruct-align/2bb8.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/2b/2bb8/nostruct-align/2bb8.t2k-w0.5.mod . Average NLL-Simple NULL score: -16.965689 /projects/compbio/experiments/models.97/pdb/1t/1tnm/nostruct-align/1tnm.t2k-w0.5.mod(21): Reading nostruct-align/1tnm.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc15-11131/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1t/1tnm/nostruct-align/1tnm.t2k-w0.5.mod (nostruct-align/1tnm.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1t/1tnm/nostruct-align/1tnm.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.982693 /projects/compbio/experiments/models.97/pdb/1j/1jeoA/nostruct-align/1jeoA.t2k-w0.5.mod(22): Reading nostruct-align/1jeoA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc51-3151/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1j/1jeoA/nostruct-align/1jeoA.t2k-w0.5.mod (nostruct-align/1jeoA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1j/1jeoA/nostruct-align/1jeoA.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.616693 /projects/compbio/experiments/models.97/pdb/2p/2ptl/nostruct-align/2ptl.t2k-w0.5.mod(21): Reading nostruct-align/2ptl.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc85-9692/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/2p/2ptl/nostruct-align/2ptl.t2k-w0.5.mod (nostruct-align/2ptl.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/2p/2ptl/nostruct-align/2ptl.t2k-w0.5.mod . Average NLL-Simple NULL score: -16.767689 /projects/compbio/experiments/models.97/pdb/1h/1htmB/nostruct-align/1htmB.t2k-w0.5.mod(21): Reading nostruct-align/1htmB.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc35-21168/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1h/1htmB/nostruct-align/1htmB.t2k-w0.5.mod (nostruct-align/1htmB.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1h/1htmB/nostruct-align/1htmB.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.078690 /projects/compbio/experiments/models.97/pdb/3n/3nodB/nostruct-align/3nodB.t2k-w0.5.mod(21): Reading nostruct-align/3nodB.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc31-21607/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/3n/3nodB/nostruct-align/3nodB.t2k-w0.5.mod (nostruct-align/3nodB.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/3n/3nodB/nostruct-align/3nodB.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.895689 /projects/compbio/experiments/models.97/pdb/2b/2baa/nostruct-align/2baa.t2k-w0.5.mod(22): Reading nostruct-align/2baa.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc18-9432/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/2b/2baa/nostruct-align/2baa.t2k-w0.5.mod (nostruct-align/2baa.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/2b/2baa/nostruct-align/2baa.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.109674 /projects/compbio/experiments/models.97/pdb/1t/1tns/nostruct-align/1tns.t2k-w0.5.mod(21): Reading nostruct-align/1tns.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc42-13038/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1t/1tns/nostruct-align/1tns.t2k-w0.5.mod (nostruct-align/1tns.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1t/1tns/nostruct-align/1tns.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.060698 /projects/compbio/experiments/models.97/pdb/2a/2aaiB/nostruct-align/2aaiB.t2k-w0.5.mod(22): Reading nostruct-align/2aaiB.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc72-27923/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/2a/2aaiB/nostruct-align/2aaiB.t2k-w0.5.mod (nostruct-align/2aaiB.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/2a/2aaiB/nostruct-align/2aaiB.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.830688 /projects/compbio/experiments/models.97/pdb/1m/1mea/nostruct-align/1mea.t2k-w0.5.mod(21): Reading nostruct-align/1mea.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc18-3998/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1m/1mea/nostruct-align/1mea.t2k-w0.5.mod (nostruct-align/1mea.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1m/1mea/nostruct-align/1mea.t2k-w0.5.mod . Average NLL-Simple NULL score: -15.186671 /projects/compbio/experiments/models.97/pdb/1j/1jlyA/nostruct-align/1jlyA.t2k-w0.5.mod(22): Reading nostruct-align/1jlyA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc38-25265/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1j/1jlyA/nostruct-align/1jlyA.t2k-w0.5.mod (nostruct-align/1jlyA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1j/1jlyA/nostruct-align/1jlyA.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.578686 /projects/compbio/experiments/models.97/pdb/3l/3lzt/nostruct-align/3lzt.t2k-w0.5.mod(22): Reading nostruct-align/3lzt.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc72-22239/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/3l/3lzt/nostruct-align/3lzt.t2k-w0.5.mod (nostruct-align/3lzt.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/3l/3lzt/nostruct-align/3lzt.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.138680 /projects/compbio/experiments/models.97/pdb/1g/1g6sA/nostruct-align/1g6sA.t2k-w0.5.mod(22): Reading nostruct-align/1g6sA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc45-6386/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1g/1g6sA/nostruct-align/1g6sA.t2k-w0.5.mod (nostruct-align/1g6sA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1g/1g6sA/nostruct-align/1g6sA.t2k-w0.5.mod . Average NLL-Simple NULL score: -23.305685 /projects/compbio/experiments/models.97/pdb/1e/1ez1A/nostruct-align/1ez1A.t2k-w0.5.mod(21): Reading nostruct-align/1ez1A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc77-23934/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1ez1A/nostruct-align/1ez1A.t2k-w0.5.mod (nostruct-align/1ez1A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1ez1A/nostruct-align/1ez1A.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.843695 /projects/compbio/experiments/models.97/pdb/1b/1buoA/nostruct-align/1buoA.t2k-w0.5.mod(22): Reading nostruct-align/1buoA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc38-10101/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1b/1buoA/nostruct-align/1buoA.t2k-w0.5.mod (nostruct-align/1buoA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1b/1buoA/nostruct-align/1buoA.t2k-w0.5.mod . Average NLL-Simple NULL score: -22.099670 /projects/compbio/experiments/models.97/pdb/1m/1mek/nostruct-align/1mek.t2k-w0.5.mod(21): Reading nostruct-align/1mek.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc04-6135/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1m/1mek/nostruct-align/1mek.t2k-w0.5.mod (nostruct-align/1mek.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1m/1mek/nostruct-align/1mek.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.770678 /projects/compbio/experiments/models.97/pdb/1e/1ed5A/nostruct-align/1ed5A.t2k-w0.5.mod(21): Reading nostruct-align/1ed5A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc55-7354/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1ed5A/nostruct-align/1ed5A.t2k-w0.5.mod (nostruct-align/1ed5A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1ed5A/nostruct-align/1ed5A.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.322699 /projects/compbio/experiments/models.97/pdb/1p/1pdnC/nostruct-align/1pdnC.t2k-w0.5.mod(21): Reading nostruct-align/1pdnC.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc88-3371/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1p/1pdnC/nostruct-align/1pdnC.t2k-w0.5.mod (nostruct-align/1pdnC.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1p/1pdnC/nostruct-align/1pdnC.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.415682 /projects/compbio/experiments/models.97/pdb/1q/1qb2A/nostruct-align/1qb2A.t2k-w0.5.mod(21): Reading nostruct-align/1qb2A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc69-24333/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1q/1qb2A/nostruct-align/1qb2A.t2k-w0.5.mod (nostruct-align/1qb2A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1q/1qb2A/nostruct-align/1qb2A.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.188683 /projects/compbio/experiments/models.97/pdb/1t/1toh/nostruct-align/1toh.t2k-w0.5.mod(21): Reading nostruct-align/1toh.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc57-11570/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1t/1toh/nostruct-align/1toh.t2k-w0.5.mod (nostruct-align/1toh.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1t/1toh/nostruct-align/1toh.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.651680 /projects/compbio/experiments/models.97/pdb/1a/1a93A/nostruct-align/1a93A.t2k-w0.5.mod(21): Reading nostruct-align/1a93A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc17-17682/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1a/1a93A/nostruct-align/1a93A.t2k-w0.5.mod (nostruct-align/1a93A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1a/1a93A/nostruct-align/1a93A.t2k-w0.5.mod . Average NLL-Simple NULL score: -15.690674 /projects/compbio/experiments/models.97/pdb/1t/1tkaA/nostruct-align/1tkaA.t2k-w0.5.mod(21): Reading nostruct-align/1tkaA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc65-17480/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1t/1tkaA/nostruct-align/1tkaA.t2k-w0.5.mod (nostruct-align/1tkaA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1t/1tkaA/nostruct-align/1tkaA.t2k-w0.5.mod . Average NLL-Simple NULL score: -23.255680 /projects/compbio/experiments/models.97/pdb/1i/1iijA/nostruct-align/1iijA.t2k-w0.5.mod(21): Reading nostruct-align/1iijA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc04-3908/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1i/1iijA/nostruct-align/1iijA.t2k-w0.5.mod (nostruct-align/1iijA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1i/1iijA/nostruct-align/1iijA.t2k-w0.5.mod . Average NLL-Simple NULL score: -16.000690 /projects/compbio/experiments/models.97/pdb/1a/1a93B/nostruct-align/1a93B.t2k-w0.5.mod(21): Reading nostruct-align/1a93B.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc10-25411/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1a/1a93B/nostruct-align/1a93B.t2k-w0.5.mod (nostruct-align/1a93B.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1a/1a93B/nostruct-align/1a93B.t2k-w0.5.mod . Average NLL-Simple NULL score: -16.029690 /projects/compbio/experiments/models.97/pdb/1t/1ton/nostruct-align/1ton.t2k-w0.5.mod(21): Reading nostruct-align/1ton.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc66-11044/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1t/1ton/nostruct-align/1ton.t2k-w0.5.mod (nostruct-align/1ton.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1t/1ton/nostruct-align/1ton.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.672684 /projects/compbio/experiments/models.97/pdb/1j/1jepA/nostruct-align/1jepA.t2k-w0.5.mod(22): Reading nostruct-align/1jepA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc71-15089/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1j/1jepA/nostruct-align/1jepA.t2k-w0.5.mod (nostruct-align/1jepA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1j/1jepA/nostruct-align/1jepA.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.583681 /projects/compbio/experiments/models.97/pdb/1t/1top/nostruct-align/1top.t2k-w0.5.mod(21): Reading nostruct-align/1top.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc14-2481/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1t/1top/nostruct-align/1top.t2k-w0.5.mod (nostruct-align/1top.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1t/1top/nostruct-align/1top.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.954678 /projects/compbio/experiments/models.97/pdb/1e/1eqjA/nostruct-align/1eqjA.t2k-w0.5.mod(22): Reading nostruct-align/1eqjA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc65-25362/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1eqjA/nostruct-align/1eqjA.t2k-w0.5.mod (nostruct-align/1eqjA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1eqjA/nostruct-align/1eqjA.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.387674 /projects/compbio/experiments/models.97/pdb/1t/1trkA/nostruct-align/1trkA.t2k-w0.5.mod(22): Reading nostruct-align/1trkA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc74-5607/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1t/1trkA/nostruct-align/1trkA.t2k-w0.5.mod (nostruct-align/1trkA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1t/1trkA/nostruct-align/1trkA.t2k-w0.5.mod . Average NLL-Simple NULL score: -22.667685 /projects/compbio/experiments/models.97/pdb/2f/2frvA/nostruct-align/2frvA.t2k-w0.5.mod(21): Reading nostruct-align/2frvA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc72-15701/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/2f/2frvA/nostruct-align/2frvA.t2k-w0.5.mod (nostruct-align/2frvA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/2f/2frvA/nostruct-align/2frvA.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.711679 /projects/compbio/experiments/models.97/pdb/1m/1mfa/nostruct-align/1mfa.t2k-w0.5.mod(22): Reading nostruct-align/1mfa.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc53-10679/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1m/1mfa/nostruct-align/1mfa.t2k-w0.5.mod (nostruct-align/1mfa.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1m/1mfa/nostruct-align/1mfa.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.189671 /projects/compbio/experiments/models.97/pdb/2f/2frvB/nostruct-align/2frvB.t2k-w0.5.mod(21): Reading nostruct-align/2frvB.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc05-23078/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/2f/2frvB/nostruct-align/2frvB.t2k-w0.5.mod (nostruct-align/2frvB.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/2f/2frvB/nostruct-align/2frvB.t2k-w0.5.mod . Average NLL-Simple NULL score: -22.143679 /projects/compbio/experiments/models.97/pdb/1g/1gk4A/nostruct-align/1gk4A.t2k-w0.5.mod(22): Reading nostruct-align/1gk4A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc61-32484/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1g/1gk4A/nostruct-align/1gk4A.t2k-w0.5.mod (nostruct-align/1gk4A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1g/1gk4A/nostruct-align/1gk4A.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.452696 /projects/compbio/experiments/models.97/pdb/2i/2ila/nostruct-align/2ila.t2k-w0.5.mod(21): Reading nostruct-align/2ila.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc25-2943/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/2i/2ila/nostruct-align/2ila.t2k-w0.5.mod (nostruct-align/2ila.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/2i/2ila/nostruct-align/2ila.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.656685 /projects/compbio/experiments/models.97/pdb/1g/1gk4C/nostruct-align/1gk4C.t2k-w0.5.mod(22): Reading nostruct-align/1gk4C.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc45-5768/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1g/1gk4C/nostruct-align/1gk4C.t2k-w0.5.mod (nostruct-align/1gk4C.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1g/1gk4C/nostruct-align/1gk4C.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.224670 /projects/compbio/experiments/models.97/pdb/1e/1extA/nostruct-align/1extA.t2k-w0.5.mod(22): Reading nostruct-align/1extA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc30-15467/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1extA/nostruct-align/1extA.t2k-w0.5.mod (nostruct-align/1extA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1extA/nostruct-align/1extA.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.790674 /projects/compbio/experiments/models.97/pdb/1g/1gk4D/nostruct-align/1gk4D.t2k-w0.5.mod(22): Reading nostruct-align/1gk4D.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc69-6212/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1g/1gk4D/nostruct-align/1gk4D.t2k-w0.5.mod (nostruct-align/1gk4D.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1g/1gk4D/nostruct-align/1gk4D.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.281679 /projects/compbio/experiments/models.97/pdb/1b/1bupA/nostruct-align/1bupA.t2k-w0.5.mod(22): Reading nostruct-align/1bupA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc18-14843/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1b/1bupA/nostruct-align/1bupA.t2k-w0.5.mod (nostruct-align/1bupA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1b/1bupA/nostruct-align/1bupA.t2k-w0.5.mod . Average NLL-Simple NULL score: -22.377676 /projects/compbio/experiments/models.97/pdb/3t/3tdt/nostruct-align/3tdt.t2k-w0.5.mod(22): Reading nostruct-align/3tdt.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc36-19060/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/3t/3tdt/nostruct-align/3tdt.t2k-w0.5.mod (nostruct-align/3tdt.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/3t/3tdt/nostruct-align/3tdt.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.808693 /projects/compbio/experiments/models.97/pdb/2i/2ilk/nostruct-align/2ilk.t2k-w0.5.mod(22): Reading nostruct-align/2ilk.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc73-27850/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/2i/2ilk/nostruct-align/2ilk.t2k-w0.5.mod (nostruct-align/2ilk.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/2i/2ilk/nostruct-align/2ilk.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.171680 /projects/compbio/experiments/models.97/pdb/1t/1tpg/nostruct-align/1tpg.t2k-w0.5.mod(21): Reading nostruct-align/1tpg.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc23-16637/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1t/1tpg/nostruct-align/1tpg.t2k-w0.5.mod (nostruct-align/1tpg.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1t/1tpg/nostruct-align/1tpg.t2k-w0.5.mod . Average NLL-Simple NULL score: -16.837692 /projects/compbio/experiments/models.97/pdb/3e/3erk/nostruct-align/3erk.t2k-w0.5.mod(21): Reading nostruct-align/3erk.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc06-22092/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/3e/3erk/nostruct-align/3erk.t2k-w0.5.mod (nostruct-align/3erk.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/3e/3erk/nostruct-align/3erk.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.425680 /projects/compbio/experiments/models.97/pdb/1m/1mh1/nostruct-align/1mh1.t2k-w0.5.mod(21): Reading nostruct-align/1mh1.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc24-30892/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1m/1mh1/nostruct-align/1mh1.t2k-w0.5.mod (nostruct-align/1mh1.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1m/1mh1/nostruct-align/1mh1.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.588692 /projects/compbio/experiments/models.97/pdb/1m/1mfs/nostruct-align/1mfs.t2k-w0.5.mod(21): Reading nostruct-align/1mfs.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc23-16807/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1m/1mfs/nostruct-align/1mfs.t2k-w0.5.mod (nostruct-align/1mfs.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1m/1mfs/nostruct-align/1mfs.t2k-w0.5.mod . Average NLL-Simple NULL score: -15.801697 /projects/compbio/experiments/models.97/pdb/2b/2bby/nostruct-align/2bby.t2k-w0.5.mod(21): Reading nostruct-align/2bby.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc74-15158/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/2b/2bby/nostruct-align/2bby.t2k-w0.5.mod (nostruct-align/2bby.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/2b/2bby/nostruct-align/2bby.t2k-w0.5.mod . Average NLL-Simple NULL score: -16.805698 /projects/compbio/experiments/models.97/pdb/1l/1l9mA/nostruct-align/1l9mA.t2k-w0.5.mod(22): Reading nostruct-align/1l9mA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc57-22583/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1l/1l9mA/nostruct-align/1l9mA.t2k-w0.5.mod (nostruct-align/1l9mA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1l/1l9mA/nostruct-align/1l9mA.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.211678 /projects/compbio/experiments/models.97/pdb/1a/1a7vA/nostruct-align/1a7vA.t2k-w0.5.mod(21): Reading nostruct-align/1a7vA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc48-14240/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1a/1a7vA/nostruct-align/1a7vA.t2k-w0.5.mod (nostruct-align/1a7vA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1a/1a7vA/nostruct-align/1a7vA.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.501677 /projects/compbio/experiments/models.97/pdb/1e/1ejaB/nostruct-align/1ejaB.t2k-w0.5.mod(21): Reading nostruct-align/1ejaB.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc04-14503/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1ejaB/nostruct-align/1ejaB.t2k-w0.5.mod (nostruct-align/1ejaB.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1ejaB/nostruct-align/1ejaB.t2k-w0.5.mod . Average NLL-Simple NULL score: -15.826683 /projects/compbio/experiments/models.97/pdb/1t/1tpm/nostruct-align/1tpm.t2k-w0.5.mod(21): Reading nostruct-align/1tpm.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc52-3630/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1t/1tpm/nostruct-align/1tpm.t2k-w0.5.mod (nostruct-align/1tpm.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1t/1tpm/nostruct-align/1tpm.t2k-w0.5.mod . Average NLL-Simple NULL score: -16.164698 /projects/compbio/experiments/models.97/pdb/1i/1i6iA/nostruct-align/1i6iA.t2k-w0.5.mod(21): Reading nostruct-align/1i6iA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc52-828/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1i/1i6iA/nostruct-align/1i6iA.t2k-w0.5.mod (nostruct-align/1i6iA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1i/1i6iA/nostruct-align/1i6iA.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.911674 /projects/compbio/experiments/models.97/pdb/1k/1kwsA/nostruct-align/1kwsA.t2k-w0.5.mod(22): Reading nostruct-align/1kwsA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc65-1193/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1k/1kwsA/nostruct-align/1kwsA.t2k-w0.5.mod (nostruct-align/1kwsA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1k/1kwsA/nostruct-align/1kwsA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.592674 /projects/compbio/experiments/models.97/pdb/1j/1jeqA/nostruct-align/1jeqA.t2k-w0.5.mod(21): Reading nostruct-align/1jeqA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc64-3274/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1j/1jeqA/nostruct-align/1jeqA.t2k-w0.5.mod (nostruct-align/1jeqA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1j/1jeqA/nostruct-align/1jeqA.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.380676 /projects/compbio/experiments/models.97/pdb/1j/1jeqB/nostruct-align/1jeqB.t2k-w0.5.mod(21): Reading nostruct-align/1jeqB.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc80-27975/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1j/1jeqB/nostruct-align/1jeqB.t2k-w0.5.mod (nostruct-align/1jeqB.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1j/1jeqB/nostruct-align/1jeqB.t2k-w0.5.mod . Average NLL-Simple NULL score: -22.627691 /projects/compbio/experiments/models.97/pdb/1s/1svfA/nostruct-align/1svfA.t2k-w0.5.mod(22): Reading nostruct-align/1svfA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc51-19298/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1s/1svfA/nostruct-align/1svfA.t2k-w0.5.mod (nostruct-align/1svfA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1s/1svfA/nostruct-align/1svfA.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.516691 /projects/compbio/experiments/models.97/pdb/1s/1svfB/nostruct-align/1svfB.t2k-w0.5.mod(22): Reading nostruct-align/1svfB.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc66-24073/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1s/1svfB/nostruct-align/1svfB.t2k-w0.5.mod (nostruct-align/1svfB.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1s/1svfB/nostruct-align/1svfB.t2k-w0.5.mod . Average NLL-Simple NULL score: -16.277689 /projects/compbio/experiments/models.97/pdb/1c/1c0aA/nostruct-align/1c0aA.t2k-w0.5.mod(21): Reading nostruct-align/1c0aA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc76-19076/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1c/1c0aA/nostruct-align/1c0aA.t2k-w0.5.mod (nostruct-align/1c0aA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1c/1c0aA/nostruct-align/1c0aA.t2k-w0.5.mod . Average NLL-Simple NULL score: -22.191698 /projects/compbio/experiments/models.97/pdb/1t/1tpt/nostruct-align/1tpt.t2k-w0.5.mod(21): Reading nostruct-align/1tpt.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc22-29124/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1t/1tpt/nostruct-align/1tpt.t2k-w0.5.mod (nostruct-align/1tpt.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1t/1tpt/nostruct-align/1tpt.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.780674 /projects/compbio/experiments/models.97/pdb/1r/1r1bA/nostruct-align/1r1bA.t2k-w0.5.mod(21): Reading nostruct-align/1r1bA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc43-9269/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1r/1r1bA/nostruct-align/1r1bA.t2k-w0.5.mod (nostruct-align/1r1bA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1r/1r1bA/nostruct-align/1r1bA.t2k-w0.5.mod . Average NLL-Simple NULL score: -16.832699 /projects/compbio/experiments/models.97/pdb/1k/1kawA/nostruct-align/1kawA.t2k-w0.5.mod(21): Reading nostruct-align/1kawA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc02-13898/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1k/1kawA/nostruct-align/1kawA.t2k-w0.5.mod (nostruct-align/1kawA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1k/1kawA/nostruct-align/1kawA.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.256672 /projects/compbio/experiments/models.97/pdb/1e/1eqkA/nostruct-align/1eqkA.t2k-w0.5.mod(21): Reading nostruct-align/1eqkA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc54-972/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1eqkA/nostruct-align/1eqkA.t2k-w0.5.mod (nostruct-align/1eqkA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1eqkA/nostruct-align/1eqkA.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.042679 /projects/compbio/experiments/models.97/pdb/1i/1ir3A/nostruct-align/1ir3A.t2k-w0.5.mod(22): Reading nostruct-align/1ir3A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc67-9595/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1i/1ir3A/nostruct-align/1ir3A.t2k-w0.5.mod (nostruct-align/1ir3A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1i/1ir3A/nostruct-align/1ir3A.t2k-w0.5.mod . Average NLL-Simple NULL score: -22.085697 /projects/compbio/experiments/models.97/pdb/2b/2bce/nostruct-align/2bce.t2k-w0.5.mod(22): Reading nostruct-align/2bce.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc28-20011/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/2b/2bce/nostruct-align/2bce.t2k-w0.5.mod (nostruct-align/2bce.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/2b/2bce/nostruct-align/2bce.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.901674 /projects/compbio/experiments/models.97/pdb/1u/1ughI/nostruct-align/1ughI.t2k-w0.5.mod(21): Reading nostruct-align/1ughI.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc05-25977/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1u/1ughI/nostruct-align/1ughI.t2k-w0.5.mod (nostruct-align/1ughI.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1u/1ughI/nostruct-align/1ughI.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.700695 /projects/compbio/experiments/models.97/pdb/1j/1j9yA/nostruct-align/1j9yA.t2k-w0.5.mod(22): Reading nostruct-align/1j9yA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc71-30775/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1j/1j9yA/nostruct-align/1j9yA.t2k-w0.5.mod (nostruct-align/1j9yA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1j/1j9yA/nostruct-align/1j9yA.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.084673 /projects/compbio/experiments/models.97/pdb/1c/1c7kA/nostruct-align/1c7kA.t2k-w0.5.mod(22): Reading nostruct-align/1c7kA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc20-10582/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1c/1c7kA/nostruct-align/1c7kA.t2k-w0.5.mod (nostruct-align/1c7kA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1c/1c7kA/nostruct-align/1c7kA.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.520689 /projects/compbio/experiments/models.97/pdb/1g/1g6uA/nostruct-align/1g6uA.t2k-w0.5.mod(22): Reading nostruct-align/1g6uA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc38-14135/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1g/1g6uA/nostruct-align/1g6uA.t2k-w0.5.mod (nostruct-align/1g6uA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1g/1g6uA/nostruct-align/1g6uA.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.828671 /projects/compbio/experiments/models.97/pdb/1e/1ez3A/nostruct-align/1ez3A.t2k-w0.5.mod(22): Reading nostruct-align/1ez3A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc58-1356/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1ez3A/nostruct-align/1ez3A.t2k-w0.5.mod (nostruct-align/1ez3A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1ez3A/nostruct-align/1ez3A.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.120678 /projects/compbio/experiments/models.97/pdb/1d/1dfsA/nostruct-align/1dfsA.t2k-w0.5.mod(21): Reading nostruct-align/1dfsA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc56-18288/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1d/1dfsA/nostruct-align/1dfsA.t2k-w0.5.mod (nostruct-align/1dfsA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1d/1dfsA/nostruct-align/1dfsA.t2k-w0.5.mod . Average NLL-Simple NULL score: -15.170696 /projects/compbio/experiments/models.97/pdb/1e/1ed7A/nostruct-align/1ed7A.t2k-w0.5.mod(21): Reading nostruct-align/1ed7A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc04-5007/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1ed7A/nostruct-align/1ed7A.t2k-w0.5.mod (nostruct-align/1ed7A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1ed7A/nostruct-align/1ed7A.t2k-w0.5.mod . Average NLL-Simple NULL score: -16.100670 /projects/compbio/experiments/models.97/pdb/1j/1jtdB/nostruct-align/1jtdB.t2k-w0.5.mod(21): Reading nostruct-align/1jtdB.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc23-14038/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1j/1jtdB/nostruct-align/1jtdB.t2k-w0.5.mod (nostruct-align/1jtdB.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1j/1jtdB/nostruct-align/1jtdB.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.643681 /projects/compbio/experiments/models.97/pdb/1e/1e15A/nostruct-align/1e15A.t2k-w0.5.mod(21): Reading nostruct-align/1e15A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc50-2788/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1e15A/nostruct-align/1e15A.t2k-w0.5.mod (nostruct-align/1e15A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1e15A/nostruct-align/1e15A.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.852694 /projects/compbio/experiments/models.97/pdb/1c/1cqwA/nostruct-align/1cqwA.t2k-w0.5.mod(21): Reading nostruct-align/1cqwA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc77-758/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1c/1cqwA/nostruct-align/1cqwA.t2k-w0.5.mod (nostruct-align/1cqwA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1c/1cqwA/nostruct-align/1cqwA.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.232676 /projects/compbio/experiments/models.97/pdb/1m/1mgn/nostruct-align/1mgn.t2k-w0.5.mod(21): Reading nostruct-align/1mgn.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc39-23876/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1m/1mgn/nostruct-align/1mgn.t2k-w0.5.mod (nostruct-align/1mgn.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1m/1mgn/nostruct-align/1mgn.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.563684 /projects/compbio/experiments/models.97/pdb/1a/1ajyA/nostruct-align/1ajyA.t2k-w0.5.mod(21): Reading nostruct-align/1ajyA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc05-20744/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1a/1ajyA/nostruct-align/1ajyA.t2k-w0.5.mod (nostruct-align/1ajyA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1a/1ajyA/nostruct-align/1ajyA.t2k-w0.5.mod . Average NLL-Simple NULL score: -16.908672 /projects/compbio/experiments/models.97/pdb/1e/1ejbA/nostruct-align/1ejbA.t2k-w0.5.mod(22): Reading nostruct-align/1ejbA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc55-13730/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1ejbA/nostruct-align/1ejbA.t2k-w0.5.mod (nostruct-align/1ejbA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1ejbA/nostruct-align/1ejbA.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.474672 /projects/compbio/experiments/models.97/pdb/1g/1gxjA/nostruct-align/1gxjA.t2k-w0.5.mod(22): Reading nostruct-align/1gxjA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc45-2089/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1g/1gxjA/nostruct-align/1gxjA.t2k-w0.5.mod (nostruct-align/1gxjA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1g/1gxjA/nostruct-align/1gxjA.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.466684 /projects/compbio/experiments/models.97/pdb/1u/1ugiA/nostruct-align/1ugiA.t2k-w0.5.mod(22): Reading nostruct-align/1ugiA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc58-2925/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1u/1ugiA/nostruct-align/1ugiA.t2k-w0.5.mod (nostruct-align/1ugiA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1u/1ugiA/nostruct-align/1ugiA.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.728695 /projects/compbio/experiments/models.97/pdb/8a/8abp/nostruct-align/8abp.t2k-w0.5.mod(22): Reading nostruct-align/8abp.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc62-8299/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/8a/8abp/nostruct-align/8abp.t2k-w0.5.mod (nostruct-align/8abp.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/8a/8abp/nostruct-align/8abp.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.009686 /projects/compbio/experiments/models.97/pdb/1p/1pscA/nostruct-align/1pscA.t2k-w0.5.mod(21): Reading nostruct-align/1pscA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc47-12997/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1p/1pscA/nostruct-align/1pscA.t2k-w0.5.mod (nostruct-align/1pscA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1p/1pscA/nostruct-align/1pscA.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.728683 /projects/compbio/experiments/models.97/pdb/1k/1kc6A/nostruct-align/1kc6A.t2k-w0.5.mod(22): Reading nostruct-align/1kc6A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc32-18407/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1k/1kc6A/nostruct-align/1kc6A.t2k-w0.5.mod (nostruct-align/1kc6A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1k/1kc6A/nostruct-align/1kc6A.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.545698 /projects/compbio/experiments/models.97/pdb/1k/1k04A/nostruct-align/1k04A.t2k-w0.5.mod(22): Reading nostruct-align/1k04A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc86-10124/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1k/1k04A/nostruct-align/1k04A.t2k-w0.5.mod (nostruct-align/1k04A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1k/1k04A/nostruct-align/1k04A.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.882677 /projects/compbio/experiments/models.97/pdb/1q/1qoiA/nostruct-align/1qoiA.t2k-w0.5.mod(21): Reading nostruct-align/1qoiA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc42-12592/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1q/1qoiA/nostruct-align/1qoiA.t2k-w0.5.mod (nostruct-align/1qoiA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1q/1qoiA/nostruct-align/1qoiA.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.078691 /projects/compbio/experiments/models.97/pdb/1f/1fo0A/nostruct-align/1fo0A.t2k-w0.5.mod(22): Reading nostruct-align/1fo0A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc59-31963/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1fo0A/nostruct-align/1fo0A.t2k-w0.5.mod (nostruct-align/1fo0A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1fo0A/nostruct-align/1fo0A.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.652670 /projects/compbio/experiments/models.97/pdb/1f/1fo0B/nostruct-align/1fo0B.t2k-w0.5.mod(21): Reading nostruct-align/1fo0B.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc22-26000/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1fo0B/nostruct-align/1fo0B.t2k-w0.5.mod (nostruct-align/1fo0B.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1fo0B/nostruct-align/1fo0B.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.535681 /projects/compbio/experiments/models.97/pdb/1g/1g84A/nostruct-align/1g84A.t2k-w0.5.mod(21): Reading nostruct-align/1g84A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc08-16063/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1g/1g84A/nostruct-align/1g84A.t2k-w0.5.mod (nostruct-align/1g84A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1g/1g84A/nostruct-align/1g84A.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.903688 /projects/compbio/experiments/models.97/pdb/1b/1bw0A/nostruct-align/1bw0A.t2k-w0.5.mod(22): Reading nostruct-align/1bw0A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc59-28742/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1b/1bw0A/nostruct-align/1bw0A.t2k-w0.5.mod (nostruct-align/1bw0A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1b/1bw0A/nostruct-align/1bw0A.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.778692 /projects/compbio/experiments/models.97/pdb/1t/1trb/nostruct-align/1trb.t2k-w0.5.mod(21): Reading nostruct-align/1trb.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc35-21567/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1t/1trb/nostruct-align/1trb.t2k-w0.5.mod (nostruct-align/1trb.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1t/1trb/nostruct-align/1trb.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.825676 /projects/compbio/experiments/models.97/pdb/1e/1ed8A/nostruct-align/1ed8A.t2k-w0.5.mod(22): Reading nostruct-align/1ed8A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc64-1932/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1ed8A/nostruct-align/1ed8A.t2k-w0.5.mod (nostruct-align/1ed8A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1ed8A/nostruct-align/1ed8A.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.295673 /projects/compbio/experiments/models.97/pdb/1c/1cs6A/nostruct-align/1cs6A.t2k-w0.5.mod(21): Reading nostruct-align/1cs6A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc35-6391/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1c/1cs6A/nostruct-align/1cs6A.t2k-w0.5.mod (nostruct-align/1cs6A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1c/1cs6A/nostruct-align/1cs6A.t2k-w0.5.mod . Average NLL-Simple NULL score: -25.035673 /projects/compbio/experiments/models.97/pdb/1c/1cqxA/nostruct-align/1cqxA.t2k-w0.5.mod(21): Reading nostruct-align/1cqxA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc64-13424/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1c/1cqxA/nostruct-align/1cqxA.t2k-w0.5.mod (nostruct-align/1cqxA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1c/1cqxA/nostruct-align/1cqxA.t2k-w0.5.mod . Average NLL-Simple NULL score: -22.340685 /projects/compbio/experiments/models.97/pdb/1i/1ibcA/nostruct-align/1ibcA.t2k-w0.5.mod(21): Reading nostruct-align/1ibcA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc05-29681/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1i/1ibcA/nostruct-align/1ibcA.t2k-w0.5.mod (nostruct-align/1ibcA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1i/1ibcA/nostruct-align/1ibcA.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.325691 /projects/compbio/experiments/models.97/pdb/2b/2bds/nostruct-align/2bds.t2k-w0.5.mod(21): Reading nostruct-align/2bds.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc86-8476/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/2b/2bds/nostruct-align/2bds.t2k-w0.5.mod (nostruct-align/2bds.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/2b/2bds/nostruct-align/2bds.t2k-w0.5.mod . Average NLL-Simple NULL score: -16.285683 /projects/compbio/experiments/models.97/pdb/1i/1ibcB/nostruct-align/1ibcB.t2k-w0.5.mod(21): Reading nostruct-align/1ibcB.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc18-3480/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1i/1ibcB/nostruct-align/1ibcB.t2k-w0.5.mod (nostruct-align/1ibcB.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1i/1ibcB/nostruct-align/1ibcB.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.521673 /projects/compbio/experiments/models.97/pdb/1k/1kpkA/nostruct-align/1kpkA.t2k-w0.5.mod(22): Reading nostruct-align/1kpkA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc70-10968/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1k/1kpkA/nostruct-align/1kpkA.t2k-w0.5.mod (nostruct-align/1kpkA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1k/1kpkA/nostruct-align/1kpkA.t2k-w0.5.mod . Average NLL-Simple NULL score: -22.597679 /projects/compbio/experiments/models.97/pdb/1m/1mho/nostruct-align/1mho.t2k-w0.5.mod(21): Reading nostruct-align/1mho.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc50-24583/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1m/1mho/nostruct-align/1mho.t2k-w0.5.mod (nostruct-align/1mho.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1m/1mho/nostruct-align/1mho.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.644674 /projects/compbio/experiments/models.97/pdb/1m/1mhu/nostruct-align/1mhu.t2k-w0.5.mod(21): Reading nostruct-align/1mhu.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc47-17303/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1m/1mhu/nostruct-align/1mhu.t2k-w0.5.mod (nostruct-align/1mhu.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1m/1mhu/nostruct-align/1mhu.t2k-w0.5.mod . Average NLL-Simple NULL score: -15.185676 /projects/compbio/experiments/models.97/pdb/1n/1nzyA/nostruct-align/1nzyA.t2k-w0.5.mod(21): Reading nostruct-align/1nzyA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc59-27351/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1n/1nzyA/nostruct-align/1nzyA.t2k-w0.5.mod (nostruct-align/1nzyA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1n/1nzyA/nostruct-align/1nzyA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.409689 /projects/compbio/experiments/models.97/pdb/1e/1e7aA/nostruct-align/1e7aA.t2k-w0.5.mod(22): Reading nostruct-align/1e7aA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc19-11332/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1e7aA/nostruct-align/1e7aA.t2k-w0.5.mod (nostruct-align/1e7aA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1e7aA/nostruct-align/1e7aA.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.928675 /projects/compbio/experiments/models.97/pdb/1a/1aym1/nostruct-align/1aym1.t2k-w0.5.mod(21): Reading nostruct-align/1aym1.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc86-11866/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1a/1aym1/nostruct-align/1aym1.t2k-w0.5.mod (nostruct-align/1aym1.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1a/1aym1/nostruct-align/1aym1.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.605682 /projects/compbio/experiments/models.97/pdb/1a/1aym2/nostruct-align/1aym2.t2k-w0.5.mod(21): Reading nostruct-align/1aym2.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc63-26762/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1a/1aym2/nostruct-align/1aym2.t2k-w0.5.mod (nostruct-align/1aym2.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1a/1aym2/nostruct-align/1aym2.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.261671 /projects/compbio/experiments/models.97/pdb/4i/4icb/nostruct-align/4icb.t2k-w0.5.mod(21): Reading nostruct-align/4icb.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc41-7295/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/4i/4icb/nostruct-align/4icb.t2k-w0.5.mod (nostruct-align/4icb.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/4i/4icb/nostruct-align/4icb.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.911694 /projects/compbio/experiments/models.97/pdb/2i/2int/nostruct-align/2int.t2k-w0.5.mod(21): Reading nostruct-align/2int.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc03-2902/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/2i/2int/nostruct-align/2int.t2k-w0.5.mod (nostruct-align/2int.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/2i/2int/nostruct-align/2int.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.765680 /projects/compbio/experiments/models.97/pdb/1a/1aym3/nostruct-align/1aym3.t2k-w0.5.mod(21): Reading nostruct-align/1aym3.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc19-9361/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1a/1aym3/nostruct-align/1aym3.t2k-w0.5.mod (nostruct-align/1aym3.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1a/1aym3/nostruct-align/1aym3.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.916685 /projects/compbio/experiments/models.97/pdb/1k/1ky3A/nostruct-align/1ky3A.t2k-w0.5.mod(22): Reading nostruct-align/1ky3A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc61-30168/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1k/1ky3A/nostruct-align/1ky3A.t2k-w0.5.mod (nostruct-align/1ky3A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1k/1ky3A/nostruct-align/1ky3A.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.973696 /projects/compbio/experiments/models.97/pdb/1a/1aym4/nostruct-align/1aym4.t2k-w0.5.mod(22): Reading nostruct-align/1aym4.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc72-26372/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1a/1aym4/nostruct-align/1aym4.t2k-w0.5.mod (nostruct-align/1aym4.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1a/1aym4/nostruct-align/1aym4.t2k-w0.5.mod . Average NLL-Simple NULL score: -16.262693 /projects/compbio/experiments/models.97/pdb/1j/1jg1A/nostruct-align/1jg1A.t2k-w0.5.mod(22): Reading nostruct-align/1jg1A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc71-31010/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1j/1jg1A/nostruct-align/1jg1A.t2k-w0.5.mod (nostruct-align/1jg1A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1j/1jg1A/nostruct-align/1jg1A.t2k-w0.5.mod . Average NLL-Simple NULL score: -22.487686 /projects/compbio/experiments/models.97/pdb/1d/1dugA/nostruct-align/1dugA.t2k-w0.5.mod(21): Reading nostruct-align/1dugA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc55-14733/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1d/1dugA/nostruct-align/1dugA.t2k-w0.5.mod (nostruct-align/1dugA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1d/1dugA/nostruct-align/1dugA.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.008680 /projects/compbio/experiments/models.97/pdb/8a/8acn/nostruct-align/8acn.t2k-w0.5.mod(21): Reading nostruct-align/8acn.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc62-17238/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/8a/8acn/nostruct-align/8acn.t2k-w0.5.mod (nostruct-align/8acn.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/8a/8acn/nostruct-align/8acn.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.294699 /projects/compbio/experiments/models.97/pdb/1p/1psdA/nostruct-align/1psdA.t2k-w0.5.mod(21): Reading nostruct-align/1psdA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc53-27154/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1p/1psdA/nostruct-align/1psdA.t2k-w0.5.mod (nostruct-align/1psdA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1p/1psdA/nostruct-align/1psdA.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.322685 /projects/compbio/experiments/models.97/pdb/1i/1ipwA/nostruct-align/1ipwA.t2k-w0.5.mod(21): Reading nostruct-align/1ipwA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc67-3327/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1i/1ipwA/nostruct-align/1ipwA.t2k-w0.5.mod (nostruct-align/1ipwA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1i/1ipwA/nostruct-align/1ipwA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.287670 /projects/compbio/experiments/models.97/pdb/3t/3tgf/nostruct-align/3tgf.t2k-w0.5.mod(21): Reading nostruct-align/3tgf.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc16-23443/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/3t/3tgf/nostruct-align/3tgf.t2k-w0.5.mod (nostruct-align/3tgf.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/3t/3tgf/nostruct-align/3tgf.t2k-w0.5.mod . Average NLL-Simple NULL score: -15.572684 /projects/compbio/experiments/models.97/pdb/1q/1qojA/nostruct-align/1qojA.t2k-w0.5.mod(22): Reading nostruct-align/1qojA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc87-10505/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1q/1qojA/nostruct-align/1qojA.t2k-w0.5.mod (nostruct-align/1qojA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1q/1qojA/nostruct-align/1qojA.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.218695 /projects/compbio/experiments/models.97/pdb/1f/1fo1A/nostruct-align/1fo1A.t2k-w0.5.mod(22): Reading nostruct-align/1fo1A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc41-26224/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1fo1A/nostruct-align/1fo1A.t2k-w0.5.mod (nostruct-align/1fo1A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1fo1A/nostruct-align/1fo1A.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.374672 /projects/compbio/experiments/models.97/pdb/1t/1try/nostruct-align/1try.t2k-w0.5.mod(21): Reading nostruct-align/1try.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc16-1627/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1t/1try/nostruct-align/1try.t2k-w0.5.mod (nostruct-align/1try.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1t/1try/nostruct-align/1try.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.311670 /projects/compbio/experiments/models.97/pdb/1g/1gk7A/nostruct-align/1gk7A.t2k-w0.5.mod(22): Reading nostruct-align/1gk7A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc71-27721/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1g/1gk7A/nostruct-align/1gk7A.t2k-w0.5.mod (nostruct-align/1gk7A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1g/1gk7A/nostruct-align/1gk7A.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.098690 /projects/compbio/experiments/models.97/pdb/3t/3tgl/nostruct-align/3tgl.t2k-w0.5.mod(22): Reading nostruct-align/3tgl.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc38-13543/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/3t/3tgl/nostruct-align/3tgl.t2k-w0.5.mod (nostruct-align/3tgl.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/3t/3tgl/nostruct-align/3tgl.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.313690 /projects/compbio/experiments/models.97/pdb/1d/1dh3A/nostruct-align/1dh3A.t2k-w0.5.mod(21): Reading nostruct-align/1dh3A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc29-32616/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1d/1dh3A/nostruct-align/1dh3A.t2k-w0.5.mod (nostruct-align/1dh3A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1d/1dh3A/nostruct-align/1dh3A.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.434687 /projects/compbio/experiments/models.97/pdb/2x/2xat/nostruct-align/2xat.t2k-w0.5.mod(21): Reading nostruct-align/2xat.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc47-13306/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/2x/2xat/nostruct-align/2xat.t2k-w0.5.mod (nostruct-align/2xat.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/2x/2xat/nostruct-align/2xat.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.364676 /projects/compbio/experiments/models.97/pdb/1l/1lehA/nostruct-align/1lehA.t2k-w0.5.mod(21): Reading nostruct-align/1lehA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc54-4565/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1l/1lehA/nostruct-align/1lehA.t2k-w0.5.mod (nostruct-align/1lehA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1l/1lehA/nostruct-align/1lehA.t2k-w0.5.mod . Average NLL-Simple NULL score: -22.452671 /projects/compbio/experiments/models.97/pdb/1m/1mil/nostruct-align/1mil.t2k-w0.5.mod(21): Reading nostruct-align/1mil.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc13-23881/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1m/1mil/nostruct-align/1mil.t2k-w0.5.mod (nostruct-align/1mil.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1m/1mil/nostruct-align/1mil.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.138685 /projects/compbio/experiments/models.97/pdb/1c/1cqyA/nostruct-align/1cqyA.t2k-w0.5.mod(21): Reading nostruct-align/1cqyA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc73-24547/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1c/1cqyA/nostruct-align/1cqyA.t2k-w0.5.mod (nostruct-align/1cqyA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1c/1cqyA/nostruct-align/1cqyA.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.036674 /projects/compbio/experiments/models.97/pdb/1a/1a0oD/nostruct-align/1a0oD.t2k-w0.5.mod(21): Reading nostruct-align/1a0oD.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc20-23185/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1a/1a0oD/nostruct-align/1a0oD.t2k-w0.5.mod (nostruct-align/1a0oD.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1a/1a0oD/nostruct-align/1a0oD.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.256693 /projects/compbio/experiments/models.97/pdb/1t/1tsg/nostruct-align/1tsg.t2k-w0.5.mod(21): Reading nostruct-align/1tsg.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc38-21528/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1t/1tsg/nostruct-align/1tsg.t2k-w0.5.mod (nostruct-align/1tsg.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1t/1tsg/nostruct-align/1tsg.t2k-w0.5.mod . Average NLL-Simple NULL score: -16.942688 /projects/compbio/experiments/models.97/pdb/1t/1tsk/nostruct-align/1tsk.t2k-w0.5.mod(21): Reading nostruct-align/1tsk.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc04-7899/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1t/1tsk/nostruct-align/1tsk.t2k-w0.5.mod (nostruct-align/1tsk.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1t/1tsk/nostruct-align/1tsk.t2k-w0.5.mod . Average NLL-Simple NULL score: -15.177670 /projects/compbio/experiments/models.97/pdb/1e/1ejdA/nostruct-align/1ejdA.t2k-w0.5.mod(21): Reading nostruct-align/1ejdA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc24-15538/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1ejdA/nostruct-align/1ejdA.t2k-w0.5.mod (nostruct-align/1ejdA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1ejdA/nostruct-align/1ejdA.t2k-w0.5.mod . Average NLL-Simple NULL score: -24.537697 /projects/compbio/experiments/models.97/pdb/8a/8adh/nostruct-align/8adh.t2k-w0.5.mod(21): Reading nostruct-align/8adh.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc25-31469/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/8a/8adh/nostruct-align/8adh.t2k-w0.5.mod (nostruct-align/8adh.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/8a/8adh/nostruct-align/8adh.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.151690 /projects/compbio/experiments/models.97/pdb/1t/1tsm/nostruct-align/1tsm.t2k-w0.5.mod(21): Reading nostruct-align/1tsm.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc26-28798/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1t/1tsm/nostruct-align/1tsm.t2k-w0.5.mod (nostruct-align/1tsm.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1t/1tsm/nostruct-align/1tsm.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.920698 /projects/compbio/experiments/models.97/pdb/1i/1i6lA/nostruct-align/1i6lA.t2k-w0.5.mod(22): Reading nostruct-align/1i6lA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc55-14756/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1i/1i6lA/nostruct-align/1i6lA.t2k-w0.5.mod (nostruct-align/1i6lA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1i/1i6lA/nostruct-align/1i6lA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.841696 /projects/compbio/experiments/models.97/pdb/1d/1dfuP/nostruct-align/1dfuP.t2k-w0.5.mod(22): Reading nostruct-align/1dfuP.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc32-19917/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1d/1dfuP/nostruct-align/1dfuP.t2k-w0.5.mod (nostruct-align/1dfuP.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1d/1dfuP/nostruct-align/1dfuP.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.481674 /projects/compbio/experiments/models.97/pdb/1q/1qhaA/nostruct-align/1qhaA.t2k-w0.5.mod(21): Reading nostruct-align/1qhaA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc72-25265/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1q/1qhaA/nostruct-align/1qhaA.t2k-w0.5.mod (nostruct-align/1qhaA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1q/1qhaA/nostruct-align/1qhaA.t2k-w0.5.mod . Average NLL-Simple NULL score: -22.297693 /projects/compbio/experiments/models.97/pdb/1t/1tsp/nostruct-align/1tsp.t2k-w0.5.mod(21): Reading nostruct-align/1tsp.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc42-21082/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1t/1tsp/nostruct-align/1tsp.t2k-w0.5.mod (nostruct-align/1tsp.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1t/1tsp/nostruct-align/1tsp.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.877689 /projects/compbio/experiments/models.97/pdb/1j/1jetA/nostruct-align/1jetA.t2k-w0.5.mod(22): Reading nostruct-align/1jetA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc11-21317/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1j/1jetA/nostruct-align/1jetA.t2k-w0.5.mod (nostruct-align/1jetA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1j/1jetA/nostruct-align/1jetA.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.003679 /projects/compbio/experiments/models.97/pdb/1f/1f3hA/nostruct-align/1f3hA.t2k-w0.5.mod(21): Reading nostruct-align/1f3hA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc29-1101/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1f3hA/nostruct-align/1f3hA.t2k-w0.5.mod (nostruct-align/1f3hA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1f3hA/nostruct-align/1f3hA.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.719694 /projects/compbio/experiments/models.97/pdb/4c/4crxA/nostruct-align/4crxA.t2k-w0.5.mod(21): Reading nostruct-align/4crxA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc76-22139/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/4c/4crxA/nostruct-align/4crxA.t2k-w0.5.mod (nostruct-align/4crxA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/4c/4crxA/nostruct-align/4crxA.t2k-w0.5.mod . Average NLL-Simple NULL score: -23.530689 /projects/compbio/experiments/models.97/pdb/1h/1htrB/nostruct-align/1htrB.t2k-w0.5.mod(21): Reading nostruct-align/1htrB.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc03-938/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1h/1htrB/nostruct-align/1htrB.t2k-w0.5.mod (nostruct-align/1htrB.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1h/1htrB/nostruct-align/1htrB.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.254669 /projects/compbio/experiments/models.97/pdb/1c/1c0dA/nostruct-align/1c0dA.t2k-w0.5.mod(21): Reading nostruct-align/1c0dA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc13-20111/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1c/1c0dA/nostruct-align/1c0dA.t2k-w0.5.mod (nostruct-align/1c0dA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1c/1c0dA/nostruct-align/1c0dA.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.650677 /projects/compbio/experiments/models.97/pdb/1e/1eqnA/nostruct-align/1eqnA.t2k-w0.5.mod(22): Reading nostruct-align/1eqnA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc86-20099/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1eqnA/nostruct-align/1eqnA.t2k-w0.5.mod (nostruct-align/1eqnA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1eqnA/nostruct-align/1eqnA.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.284689 /projects/compbio/experiments/models.97/pdb/1i/1ir6A/nostruct-align/1ir6A.t2k-w0.5.mod(22): Reading nostruct-align/1ir6A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc32-1733/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1i/1ir6A/nostruct-align/1ir6A.t2k-w0.5.mod (nostruct-align/1ir6A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1i/1ir6A/nostruct-align/1ir6A.t2k-w0.5.mod . Average NLL-Simple NULL score: -22.713690 /projects/compbio/experiments/models.97/pdb/1o/1oacA/nostruct-align/1oacA.t2k-w0.5.mod(22): Reading nostruct-align/1oacA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc44-22357/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1o/1oacA/nostruct-align/1oacA.t2k-w0.5.mod (nostruct-align/1oacA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1o/1oacA/nostruct-align/1oacA.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.809690 /projects/compbio/experiments/models.97/pdb/1f/1fmtA/nostruct-align/1fmtA.t2k-w0.5.mod(21): Reading nostruct-align/1fmtA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc36-25282/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1fmtA/nostruct-align/1fmtA.t2k-w0.5.mod (nostruct-align/1fmtA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1fmtA/nostruct-align/1fmtA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.727673 /projects/compbio/experiments/models.97/pdb/1f/1fmtB/nostruct-align/1fmtB.t2k-w0.5.mod(21): Reading nostruct-align/1fmtB.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc82-22643/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1fmtB/nostruct-align/1fmtB.t2k-w0.5.mod (nostruct-align/1fmtB.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1fmtB/nostruct-align/1fmtB.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.604698 /projects/compbio/experiments/models.97/pdb/1v/1v39/nostruct-align/1v39.t2k-w0.5.mod(22): Reading nostruct-align/1v39.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc25-12405/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1v/1v39/nostruct-align/1v39.t2k-w0.5.mod (nostruct-align/1v39.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1v/1v39/nostruct-align/1v39.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.285688 /projects/compbio/experiments/models.97/pdb/1m/1mjc/nostruct-align/1mjc.t2k-w0.5.mod(21): Reading nostruct-align/1mjc.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc62-8060/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1m/1mjc/nostruct-align/1mjc.t2k-w0.5.mod (nostruct-align/1mjc.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1m/1mjc/nostruct-align/1mjc.t2k-w0.5.mod . Average NLL-Simple NULL score: -16.987677 /projects/compbio/experiments/models.97/pdb/1g/1gk8A/nostruct-align/1gk8A.t2k-w0.5.mod(22): Reading nostruct-align/1gk8A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc29-14254/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1g/1gk8A/nostruct-align/1gk8A.t2k-w0.5.mod (nostruct-align/1gk8A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1g/1gk8A/nostruct-align/1gk8A.t2k-w0.5.mod . Average NLL-Simple NULL score: -24.843685 /projects/compbio/experiments/models.97/pdb/1c/1c7nA/nostruct-align/1c7nA.t2k-w0.5.mod(22): Reading nostruct-align/1c7nA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc51-17464/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1c/1c7nA/nostruct-align/1c7nA.t2k-w0.5.mod (nostruct-align/1c7nA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1c/1c7nA/nostruct-align/1c7nA.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.035671 /projects/compbio/experiments/models.97/pdb/1k/1kicA/nostruct-align/1kicA.t2k-w0.5.mod(22): Reading nostruct-align/1kicA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc46-16648/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1k/1kicA/nostruct-align/1kicA.t2k-w0.5.mod (nostruct-align/1kicA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1k/1kicA/nostruct-align/1kicA.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.586695 /projects/compbio/experiments/models.97/pdb/1g/1g6xA/nostruct-align/1g6xA.t2k-w0.5.mod(22): Reading nostruct-align/1g6xA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc65-29747/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1g/1g6xA/nostruct-align/1g6xA.t2k-w0.5.mod (nostruct-align/1g6xA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1g/1g6xA/nostruct-align/1g6xA.t2k-w0.5.mod . Average NLL-Simple NULL score: -16.292698 /projects/compbio/experiments/models.97/pdb/1k/1k6aA/nostruct-align/1k6aA.t2k-w0.5.mod(22): Reading nostruct-align/1k6aA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc73-26915/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1k/1k6aA/nostruct-align/1k6aA.t2k-w0.5.mod (nostruct-align/1k6aA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1k/1k6aA/nostruct-align/1k6aA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.395676 /projects/compbio/experiments/models.97/pdb/1f/1ffk1/nostruct-align/1ffk1.t2k-w0.5.mod(21): Reading nostruct-align/1ffk1.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc73-9848/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1ffk1/nostruct-align/1ffk1.t2k-w0.5.mod (nostruct-align/1ffk1.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1ffk1/nostruct-align/1ffk1.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.536678 /projects/compbio/experiments/models.97/pdb/1h/1htrP/nostruct-align/1htrP.t2k-w0.5.mod(22): Reading nostruct-align/1htrP.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc35-15758/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1h/1htrP/nostruct-align/1htrP.t2k-w0.5.mod (nostruct-align/1htrP.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1h/1htrP/nostruct-align/1htrP.t2k-w0.5.mod . Average NLL-Simple NULL score: -15.994690 /projects/compbio/experiments/models.97/pdb/1j/1jtgB/nostruct-align/1jtgB.t2k-w0.5.mod(22): Reading nostruct-align/1jtgB.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc21-3162/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1j/1jtgB/nostruct-align/1jtgB.t2k-w0.5.mod (nostruct-align/1jtgB.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1j/1jtgB/nostruct-align/1jtgB.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.013670 /projects/compbio/experiments/models.97/pdb/1g/1gk8I/nostruct-align/1gk8I.t2k-w0.5.mod(22): Reading nostruct-align/1gk8I.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc72-23641/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1g/1gk8I/nostruct-align/1gk8I.t2k-w0.5.mod (nostruct-align/1gk8I.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1g/1gk8I/nostruct-align/1gk8I.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.196671 /projects/compbio/experiments/models.97/pdb/1c/1cs8A/nostruct-align/1cs8A.t2k-w0.5.mod(22): Reading nostruct-align/1cs8A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc88-28604/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1c/1cs8A/nostruct-align/1cs8A.t2k-w0.5.mod (nostruct-align/1cs8A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1c/1cs8A/nostruct-align/1cs8A.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.445700 /projects/compbio/experiments/models.97/pdb/1c/1cqzA/nostruct-align/1cqzA.t2k-w0.5.mod(21): Reading nostruct-align/1cqzA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc24-26956/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1c/1cqzA/nostruct-align/1cqzA.t2k-w0.5.mod (nostruct-align/1cqzA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1c/1cqzA/nostruct-align/1cqzA.t2k-w0.5.mod . Average NLL-Simple NULL score: -22.000689 /projects/compbio/experiments/models.97/pdb/1k/1kpmA/nostruct-align/1kpmA.t2k-w0.5.mod(22): Reading nostruct-align/1kpmA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc53-1002/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1k/1kpmA/nostruct-align/1kpmA.t2k-w0.5.mod (nostruct-align/1kpmA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1k/1kpmA/nostruct-align/1kpmA.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.497679 /projects/compbio/experiments/models.97/pdb/1q/1qb7A/nostruct-align/1qb7A.t2k-w0.5.mod(21): Reading nostruct-align/1qb7A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc36-13386/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1q/1qb7A/nostruct-align/1qb7A.t2k-w0.5.mod (nostruct-align/1qb7A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1q/1qb7A/nostruct-align/1qb7A.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.201694 /projects/compbio/experiments/models.97/pdb/2u/2u2fA/nostruct-align/2u2fA.t2k-w0.5.mod(21): Reading nostruct-align/2u2fA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc07-30854/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/2u/2u2fA/nostruct-align/2u2fA.t2k-w0.5.mod (nostruct-align/2u2fA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/2u/2u2fA/nostruct-align/2u2fA.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.300676 /projects/compbio/experiments/models.97/pdb/25/256bA/nostruct-align/256bA.t2k-w0.5.mod(22): Reading nostruct-align/256bA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc87-12563/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/25/256bA/nostruct-align/256bA.t2k-w0.5.mod (nostruct-align/256bA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/25/256bA/nostruct-align/256bA.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.847673 /projects/compbio/experiments/models.97/pdb/1e/1ejeA/nostruct-align/1ejeA.t2k-w0.5.mod(22): Reading nostruct-align/1ejeA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc66-25104/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1ejeA/nostruct-align/1ejeA.t2k-w0.5.mod (nostruct-align/1ejeA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1ejeA/nostruct-align/1ejeA.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.204676 /projects/compbio/experiments/models.97/pdb/1i/1iioA/nostruct-align/1iioA.t2k-w0.5.mod(21): Reading nostruct-align/1iioA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc86-16940/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1i/1iioA/nostruct-align/1iioA.t2k-w0.5.mod (nostruct-align/1iioA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1i/1iioA/nostruct-align/1iioA.t2k-w0.5.mod . Average NLL-Simple NULL score: -16.912699 /projects/compbio/experiments/models.97/pdb/1q/1qhbA/nostruct-align/1qhbA.t2k-w0.5.mod(21): Reading nostruct-align/1qhbA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc39-31064/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1q/1qhbA/nostruct-align/1qhbA.t2k-w0.5.mod (nostruct-align/1qhbA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1q/1qhbA/nostruct-align/1qhbA.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.182686 /projects/compbio/experiments/models.97/pdb/1m/1mhyB/nostruct-align/1mhyB.t2k-w0.5.mod(21): Reading nostruct-align/1mhyB.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc60-21540/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1m/1mhyB/nostruct-align/1mhyB.t2k-w0.5.mod (nostruct-align/1mhyB.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1m/1mhyB/nostruct-align/1mhyB.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.507698 /projects/compbio/experiments/models.97/pdb/1f/1ffkB/nostruct-align/1ffkB.t2k-w0.5.mod(22): Reading nostruct-align/1ffkB.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc59-28918/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1ffkB/nostruct-align/1ffkB.t2k-w0.5.mod (nostruct-align/1ffkB.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1ffkB/nostruct-align/1ffkB.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.752682 /projects/compbio/experiments/models.97/pdb/1f/1f3iA/nostruct-align/1f3iA.t2k-w0.5.mod(22): Reading nostruct-align/1f3iA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc62-28062/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1f3iA/nostruct-align/1f3iA.t2k-w0.5.mod (nostruct-align/1f3iA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1f3iA/nostruct-align/1f3iA.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.136690 /projects/compbio/experiments/models.97/pdb/1m/1mhyD/nostruct-align/1mhyD.t2k-w0.5.mod(21): Reading nostruct-align/1mhyD.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc28-21964/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1m/1mhyD/nostruct-align/1mhyD.t2k-w0.5.mod (nostruct-align/1mhyD.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1m/1mhyD/nostruct-align/1mhyD.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.626680 /projects/compbio/experiments/models.97/pdb/1f/1ffkC/nostruct-align/1ffkC.t2k-w0.5.mod(21): Reading nostruct-align/1ffkC.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc67-25671/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1ffkC/nostruct-align/1ffkC.t2k-w0.5.mod (nostruct-align/1ffkC.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1ffkC/nostruct-align/1ffkC.t2k-w0.5.mod . Average NLL-Simple NULL score: -22.719683 /projects/compbio/experiments/models.97/pdb/1f/1ffkD/nostruct-align/1ffkD.t2k-w0.5.mod(22): Reading nostruct-align/1ffkD.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc73-14186/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1ffkD/nostruct-align/1ffkD.t2k-w0.5.mod (nostruct-align/1ffkD.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1ffkD/nostruct-align/1ffkD.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.861677 /projects/compbio/experiments/models.97/pdb/1f/1ffkE/nostruct-align/1ffkE.t2k-w0.5.mod(21): Reading nostruct-align/1ffkE.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc88-8874/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1ffkE/nostruct-align/1ffkE.t2k-w0.5.mod (nostruct-align/1ffkE.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1ffkE/nostruct-align/1ffkE.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.581697 /projects/compbio/experiments/models.97/pdb/3r/3rp2A/nostruct-align/3rp2A.t2k-w0.5.mod(21): Reading nostruct-align/3rp2A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc16-1980/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/3r/3rp2A/nostruct-align/3rp2A.t2k-w0.5.mod (nostruct-align/3rp2A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/3r/3rp2A/nostruct-align/3rp2A.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.741671 /projects/compbio/experiments/models.97/pdb/1m/1mhyG/nostruct-align/1mhyG.t2k-w0.5.mod(21): Reading nostruct-align/1mhyG.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc63-2359/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1m/1mhyG/nostruct-align/1mhyG.t2k-w0.5.mod (nostruct-align/1mhyG.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1m/1mhyG/nostruct-align/1mhyG.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.742680 /projects/compbio/experiments/models.97/pdb/1f/1ffkF/nostruct-align/1ffkF.t2k-w0.5.mod(21): Reading nostruct-align/1ffkF.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc65-32456/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1ffkF/nostruct-align/1ffkF.t2k-w0.5.mod (nostruct-align/1ffkF.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1ffkF/nostruct-align/1ffkF.t2k-w0.5.mod . Average NLL-Simple NULL score: -22.552698 /projects/compbio/experiments/models.97/pdb/1e/1eqoA/nostruct-align/1eqoA.t2k-w0.5.mod(22): Reading nostruct-align/1eqoA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc45-19490/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1eqoA/nostruct-align/1eqoA.t2k-w0.5.mod (nostruct-align/1eqoA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1eqoA/nostruct-align/1eqoA.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.208681 /projects/compbio/experiments/models.97/pdb/1f/1ffkG/nostruct-align/1ffkG.t2k-w0.5.mod(21): Reading nostruct-align/1ffkG.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc29-1362/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1ffkG/nostruct-align/1ffkG.t2k-w0.5.mod (nostruct-align/1ffkG.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1ffkG/nostruct-align/1ffkG.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.593679 /projects/compbio/experiments/models.97/pdb/1f/1ffkI/nostruct-align/1ffkI.t2k-w0.5.mod(21): Reading nostruct-align/1ffkI.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc38-9603/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1ffkI/nostruct-align/1ffkI.t2k-w0.5.mod (nostruct-align/1ffkI.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1ffkI/nostruct-align/1ffkI.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.821690 /projects/compbio/experiments/models.97/pdb/1b/1bnkA/nostruct-align/1bnkA.t2k-w0.5.mod(21): Reading nostruct-align/1bnkA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc86-14935/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1b/1bnkA/nostruct-align/1bnkA.t2k-w0.5.mod (nostruct-align/1bnkA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1b/1bnkA/nostruct-align/1bnkA.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.554688 /projects/compbio/experiments/models.97/pdb/1f/1fo3A/nostruct-align/1fo3A.t2k-w0.5.mod(21): Reading nostruct-align/1fo3A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc18-7785/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1fo3A/nostruct-align/1fo3A.t2k-w0.5.mod (nostruct-align/1fo3A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1fo3A/nostruct-align/1fo3A.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.270699 /projects/compbio/experiments/models.97/pdb/1f/1ffkJ/nostruct-align/1ffkJ.t2k-w0.5.mod(21): Reading nostruct-align/1ffkJ.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc49-2315/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1ffkJ/nostruct-align/1ffkJ.t2k-w0.5.mod (nostruct-align/1ffkJ.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1ffkJ/nostruct-align/1ffkJ.t2k-w0.5.mod . Average NLL-Simple NULL score: -24.375681 /projects/compbio/experiments/models.97/pdb/1f/1ffkK/nostruct-align/1ffkK.t2k-w0.5.mod(21): Reading nostruct-align/1ffkK.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc47-13600/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1ffkK/nostruct-align/1ffkK.t2k-w0.5.mod (nostruct-align/1ffkK.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1ffkK/nostruct-align/1ffkK.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.111685 /projects/compbio/experiments/models.97/pdb/1f/1ffkL/nostruct-align/1ffkL.t2k-w0.5.mod(21): Reading nostruct-align/1ffkL.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc45-11106/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1ffkL/nostruct-align/1ffkL.t2k-w0.5.mod (nostruct-align/1ffkL.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1ffkL/nostruct-align/1ffkL.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.460678 /projects/compbio/experiments/models.97/pdb/1f/1ffkM/nostruct-align/1ffkM.t2k-w0.5.mod(21): Reading nostruct-align/1ffkM.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc77-24224/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1ffkM/nostruct-align/1ffkM.t2k-w0.5.mod (nostruct-align/1ffkM.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1ffkM/nostruct-align/1ffkM.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.863676 /projects/compbio/experiments/models.97/pdb/1g/1gk9A/nostruct-align/1gk9A.t2k-w0.5.mod(22): Reading nostruct-align/1gk9A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc87-13334/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1g/1gk9A/nostruct-align/1gk9A.t2k-w0.5.mod (nostruct-align/1gk9A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1g/1gk9A/nostruct-align/1gk9A.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.564693 /projects/compbio/experiments/models.97/pdb/1f/1ffkN/nostruct-align/1ffkN.t2k-w0.5.mod(21): Reading nostruct-align/1ffkN.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc62-8368/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1ffkN/nostruct-align/1ffkN.t2k-w0.5.mod (nostruct-align/1ffkN.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1ffkN/nostruct-align/1ffkN.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.513683 /projects/compbio/experiments/models.97/pdb/1a/1ayoA/nostruct-align/1ayoA.t2k-w0.5.mod(22): Reading nostruct-align/1ayoA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc50-14312/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1a/1ayoA/nostruct-align/1ayoA.t2k-w0.5.mod (nostruct-align/1ayoA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1a/1ayoA/nostruct-align/1ayoA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.614677 /projects/compbio/experiments/models.97/pdb/1g/1gk9B/nostruct-align/1gk9B.t2k-w0.5.mod(22): Reading nostruct-align/1gk9B.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc66-3751/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1g/1gk9B/nostruct-align/1gk9B.t2k-w0.5.mod (nostruct-align/1gk9B.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1g/1gk9B/nostruct-align/1gk9B.t2k-w0.5.mod . Average NLL-Simple NULL score: -22.975677 /projects/compbio/experiments/models.97/pdb/1f/1ffkO/nostruct-align/1ffkO.t2k-w0.5.mod(21): Reading nostruct-align/1ffkO.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc11-5179/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1ffkO/nostruct-align/1ffkO.t2k-w0.5.mod (nostruct-align/1ffkO.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1ffkO/nostruct-align/1ffkO.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.275694 /projects/compbio/experiments/models.97/pdb/1f/1ffkP/nostruct-align/1ffkP.t2k-w0.5.mod(21): Reading nostruct-align/1ffkP.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc59-27638/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1ffkP/nostruct-align/1ffkP.t2k-w0.5.mod (nostruct-align/1ffkP.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1ffkP/nostruct-align/1ffkP.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.248695 /projects/compbio/experiments/models.97/pdb/1f/1ffkQ/nostruct-align/1ffkQ.t2k-w0.5.mod(21): Reading nostruct-align/1ffkQ.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc25-3604/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1ffkQ/nostruct-align/1ffkQ.t2k-w0.5.mod (nostruct-align/1ffkQ.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1ffkQ/nostruct-align/1ffkQ.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.362671 /projects/compbio/experiments/models.97/pdb/1f/1ffkR/nostruct-align/1ffkR.t2k-w0.5.mod(21): Reading nostruct-align/1ffkR.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc73-10109/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1ffkR/nostruct-align/1ffkR.t2k-w0.5.mod (nostruct-align/1ffkR.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1ffkR/nostruct-align/1ffkR.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.246679 /projects/compbio/experiments/models.97/pdb/1f/1faq/nostruct-align/1faq.t2k-w0.5.mod(21): Reading nostruct-align/1faq.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc39-22359/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1faq/nostruct-align/1faq.t2k-w0.5.mod (nostruct-align/1faq.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1faq/nostruct-align/1faq.t2k-w0.5.mod . Average NLL-Simple NULL score: -15.449682 /projects/compbio/experiments/models.97/pdb/1f/1ffkS/nostruct-align/1ffkS.t2k-w0.5.mod(21): Reading nostruct-align/1ffkS.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc69-24968/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1ffkS/nostruct-align/1ffkS.t2k-w0.5.mod (nostruct-align/1ffkS.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1ffkS/nostruct-align/1ffkS.t2k-w0.5.mod . Average NLL-Simple NULL score: -16.890684 /projects/compbio/experiments/models.97/pdb/1f/1far/nostruct-align/1far.t2k-w0.5.mod(21): Reading nostruct-align/1far.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc36-16113/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1far/nostruct-align/1far.t2k-w0.5.mod (nostruct-align/1far.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1far/nostruct-align/1far.t2k-w0.5.mod . Average NLL-Simple NULL score: -15.447689 /projects/compbio/experiments/models.97/pdb/1f/1ffkT/nostruct-align/1ffkT.t2k-w0.5.mod(21): Reading nostruct-align/1ffkT.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc84-30435/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1ffkT/nostruct-align/1ffkT.t2k-w0.5.mod (nostruct-align/1ffkT.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1ffkT/nostruct-align/1ffkT.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.865692 /projects/compbio/experiments/models.97/pdb/1f/1fas/nostruct-align/1fas.t2k-w0.5.mod(21): Reading nostruct-align/1fas.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc33-11334/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1fas/nostruct-align/1fas.t2k-w0.5.mod (nostruct-align/1fas.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1fas/nostruct-align/1fas.t2k-w0.5.mod . Average NLL-Simple NULL score: -16.205679 /projects/compbio/experiments/models.97/pdb/1j/1jthA/nostruct-align/1jthA.t2k-w0.5.mod(22): Reading nostruct-align/1jthA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc53-16649/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1j/1jthA/nostruct-align/1jthA.t2k-w0.5.mod (nostruct-align/1jthA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1j/1jthA/nostruct-align/1jthA.t2k-w0.5.mod . Average NLL-Simple NULL score: -16.884676 /projects/compbio/experiments/models.97/pdb/1f/1ffkU/nostruct-align/1ffkU.t2k-w0.5.mod(21): Reading nostruct-align/1ffkU.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc88-9131/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1ffkU/nostruct-align/1ffkU.t2k-w0.5.mod (nostruct-align/1ffkU.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1ffkU/nostruct-align/1ffkU.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.588671 /projects/compbio/experiments/models.97/pdb/1t/1tuc/nostruct-align/1tuc.t2k-w0.5.mod(21): Reading nostruct-align/1tuc.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc65-32745/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1t/1tuc/nostruct-align/1tuc.t2k-w0.5.mod (nostruct-align/1tuc.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1t/1tuc/nostruct-align/1tuc.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.356682 /projects/compbio/experiments/models.97/pdb/1j/1jthB/nostruct-align/1jthB.t2k-w0.5.mod(22): Reading nostruct-align/1jthB.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc49-3544/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1j/1jthB/nostruct-align/1jthB.t2k-w0.5.mod (nostruct-align/1jthB.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1j/1jthB/nostruct-align/1jthB.t2k-w0.5.mod . Average NLL-Simple NULL score: -16.708679 /projects/compbio/experiments/models.97/pdb/1f/1ffkV/nostruct-align/1ffkV.t2k-w0.5.mod(21): Reading nostruct-align/1ffkV.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc26-29518/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1ffkV/nostruct-align/1ffkV.t2k-w0.5.mod (nostruct-align/1ffkV.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1ffkV/nostruct-align/1ffkV.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.617682 /projects/compbio/experiments/models.97/pdb/1y/1yuiA/nostruct-align/1yuiA.t2k-w0.5.mod(21): Reading nostruct-align/1yuiA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc02-25047/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1y/1yuiA/nostruct-align/1yuiA.t2k-w0.5.mod (nostruct-align/1yuiA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1y/1yuiA/nostruct-align/1yuiA.t2k-w0.5.mod . Average NLL-Simple NULL score: -16.831671 /projects/compbio/experiments/models.97/pdb/1t/1tud/nostruct-align/1tud.t2k-w0.5.mod(21): Reading nostruct-align/1tud.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc29-1653/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1t/1tud/nostruct-align/1tud.t2k-w0.5.mod (nostruct-align/1tud.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1t/1tud/nostruct-align/1tud.t2k-w0.5.mod . Average NLL-Simple NULL score: -16.439682 /projects/compbio/experiments/models.97/pdb/1f/1ffkW/nostruct-align/1ffkW.t2k-w0.5.mod(21): Reading nostruct-align/1ffkW.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc62-8634/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1ffkW/nostruct-align/1ffkW.t2k-w0.5.mod (nostruct-align/1ffkW.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1ffkW/nostruct-align/1ffkW.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.009699 /projects/compbio/experiments/models.97/pdb/1e/1e19A/nostruct-align/1e19A.t2k-w0.5.mod(22): Reading nostruct-align/1e19A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc70-23902/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1e19A/nostruct-align/1e19A.t2k-w0.5.mod (nostruct-align/1e19A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1e19A/nostruct-align/1e19A.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.378677 /projects/compbio/experiments/models.97/pdb/1j/1jthD/nostruct-align/1jthD.t2k-w0.5.mod(22): Reading nostruct-align/1jthD.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc57-29355/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1j/1jthD/nostruct-align/1jthD.t2k-w0.5.mod (nostruct-align/1jthD.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1j/1jthD/nostruct-align/1jthD.t2k-w0.5.mod . Average NLL-Simple NULL score: -16.372681 /projects/compbio/experiments/models.97/pdb/1f/1ffkX/nostruct-align/1ffkX.t2k-w0.5.mod(21): Reading nostruct-align/1ffkX.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc59-27900/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1ffkX/nostruct-align/1ffkX.t2k-w0.5.mod (nostruct-align/1ffkX.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1ffkX/nostruct-align/1ffkX.t2k-w0.5.mod . Average NLL-Simple NULL score: -16.159676 /projects/compbio/experiments/models.97/pdb/2b/2bgu/nostruct-align/2bgu.t2k-w0.5.mod(21): Reading nostruct-align/2bgu.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc09-25190/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/2b/2bgu/nostruct-align/2bgu.t2k-w0.5.mod (nostruct-align/2bgu.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/2b/2bgu/nostruct-align/2bgu.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.811687 /projects/compbio/experiments/models.97/pdb/1m/1mkp/nostruct-align/1mkp.t2k-w0.5.mod(21): Reading nostruct-align/1mkp.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc45-29813/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1m/1mkp/nostruct-align/1mkp.t2k-w0.5.mod (nostruct-align/1mkp.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1m/1mkp/nostruct-align/1mkp.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.331697 /projects/compbio/experiments/models.97/pdb/1f/1ffkY/nostruct-align/1ffkY.t2k-w0.5.mod(22): Reading nostruct-align/1ffkY.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc84-32224/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1ffkY/nostruct-align/1ffkY.t2k-w0.5.mod (nostruct-align/1ffkY.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1ffkY/nostruct-align/1ffkY.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.383690 /projects/compbio/experiments/models.97/pdb/1f/1ffkZ/nostruct-align/1ffkZ.t2k-w0.5.mod(21): Reading nostruct-align/1ffkZ.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc45-11380/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1ffkZ/nostruct-align/1ffkZ.t2k-w0.5.mod (nostruct-align/1ffkZ.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1ffkZ/nostruct-align/1ffkZ.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.273672 /projects/compbio/experiments/models.97/pdb/1e/1ejfA/nostruct-align/1ejfA.t2k-w0.5.mod(22): Reading nostruct-align/1ejfA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc48-1045/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1ejfA/nostruct-align/1ejfA.t2k-w0.5.mod (nostruct-align/1ejfA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1ejfA/nostruct-align/1ejfA.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.166687 /projects/compbio/experiments/models.97/pdb/1a/1a99A/nostruct-align/1a99A.t2k-w0.5.mod(21): Reading nostruct-align/1a99A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc09-593/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1a/1a99A/nostruct-align/1a99A.t2k-w0.5.mod (nostruct-align/1a99A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1a/1a99A/nostruct-align/1a99A.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.719687 /projects/compbio/experiments/models.97/pdb/3p/3pviA/nostruct-align/3pviA.t2k-w0.5.mod(22): Reading nostruct-align/3pviA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc18-15416/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/3p/3pviA/nostruct-align/3pviA.t2k-w0.5.mod (nostruct-align/3pviA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/3p/3pviA/nostruct-align/3pviA.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.853691 /projects/compbio/experiments/models.97/pdb/1t/1tul/nostruct-align/1tul.t2k-w0.5.mod(22): Reading nostruct-align/1tul.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc41-14558/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1t/1tul/nostruct-align/1tul.t2k-w0.5.mod (nostruct-align/1tul.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1t/1tul/nostruct-align/1tul.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.984686 /projects/compbio/experiments/models.97/pdb/1c/1cydA/nostruct-align/1cydA.t2k-w0.5.mod(21): Reading nostruct-align/1cydA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc77-24623/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1c/1cydA/nostruct-align/1cydA.t2k-w0.5.mod (nostruct-align/1cydA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1c/1cydA/nostruct-align/1cydA.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.038694 /projects/compbio/experiments/models.97/pdb/1t/1tum/nostruct-align/1tum.t2k-w0.5.mod(21): Reading nostruct-align/1tum.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc85-9208/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1t/1tum/nostruct-align/1tum.t2k-w0.5.mod (nostruct-align/1tum.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1t/1tum/nostruct-align/1tum.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.210680 /projects/compbio/experiments/models.97/pdb/1j/1jevA/nostruct-align/1jevA.t2k-w0.5.mod(21): Reading nostruct-align/1jevA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc69-25370/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1j/1jevA/nostruct-align/1jevA.t2k-w0.5.mod (nostruct-align/1jevA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1j/1jevA/nostruct-align/1jevA.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.043699 /projects/compbio/experiments/models.97/pdb/1d/1dujA/nostruct-align/1dujA.t2k-w0.5.mod(21): Reading nostruct-align/1dujA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc77-1285/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1d/1dujA/nostruct-align/1dujA.t2k-w0.5.mod (nostruct-align/1dujA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1d/1dujA/nostruct-align/1dujA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.145691 /projects/compbio/experiments/models.97/pdb/1h/1httA/nostruct-align/1httA.t2k-w0.5.mod(21): Reading nostruct-align/1httA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc89-31489/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1h/1httA/nostruct-align/1httA.t2k-w0.5.mod (nostruct-align/1httA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1h/1httA/nostruct-align/1httA.t2k-w0.5.mod . Average NLL-Simple NULL score: -22.308683 /projects/compbio/experiments/models.97/pdb/1g/1gd0A/nostruct-align/1gd0A.t2k-w0.5.mod(22): Reading nostruct-align/1gd0A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc74-11810/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1g/1gd0A/nostruct-align/1gd0A.t2k-w0.5.mod (nostruct-align/1gd0A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1g/1gd0A/nostruct-align/1gd0A.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.645685 /projects/compbio/experiments/models.97/pdb/1t/1tux/nostruct-align/1tux.t2k-w0.5.mod(21): Reading nostruct-align/1tux.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc19-3811/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1t/1tux/nostruct-align/1tux.t2k-w0.5.mod (nostruct-align/1tux.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1t/1tux/nostruct-align/1tux.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.271677 /projects/compbio/experiments/models.97/pdb/1f/1fo4A/nostruct-align/1fo4A.t2k-w0.5.mod(21): Reading nostruct-align/1fo4A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc11-23750/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1fo4A/nostruct-align/1fo4A.t2k-w0.5.mod (nostruct-align/1fo4A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1fo4A/nostruct-align/1fo4A.t2k-w0.5.mod . Average NLL-Simple NULL score: -22.713682 /projects/compbio/experiments/models.97/pdb/1m/1mla/nostruct-align/1mla.t2k-w0.5.mod(22): Reading nostruct-align/1mla.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc50-16823/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1m/1mla/nostruct-align/1mla.t2k-w0.5.mod (nostruct-align/1mla.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1m/1mla/nostruct-align/1mla.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.607679 /projects/compbio/experiments/models.97/pdb/1g/1g6zA/nostruct-align/1g6zA.t2k-w0.5.mod(21): Reading nostruct-align/1g6zA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc21-10706/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1g/1g6zA/nostruct-align/1g6zA.t2k-w0.5.mod (nostruct-align/1g6zA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1g/1g6zA/nostruct-align/1g6zA.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.035688 /projects/compbio/experiments/models.97/pdb/1e/1exzA/nostruct-align/1exzA.t2k-w0.5.mod(22): Reading nostruct-align/1exzA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc38-3033/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1exzA/nostruct-align/1exzA.t2k-w0.5.mod (nostruct-align/1exzA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1exzA/nostruct-align/1exzA.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.228695 /projects/compbio/experiments/models.97/pdb/1d/1d3vA/nostruct-align/1d3vA.t2k-w0.5.mod(22): Reading nostruct-align/1d3vA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc70-23670/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1d/1d3vA/nostruct-align/1d3vA.t2k-w0.5.mod (nostruct-align/1d3vA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1d/1d3vA/nostruct-align/1d3vA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.788687 /projects/compbio/experiments/models.97/pdb/1m/1mli/nostruct-align/1mli.t2k-w0.5.mod(21): Reading nostruct-align/1mli.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc25-3870/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1m/1mli/nostruct-align/1mli.t2k-w0.5.mod (nostruct-align/1mli.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1m/1mli/nostruct-align/1mli.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.679699 /projects/compbio/experiments/models.97/pdb/1f/1fbr/nostruct-align/1fbr.t2k-w0.5.mod(21): Reading nostruct-align/1fbr.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc19-15664/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1fbr/nostruct-align/1fbr.t2k-w0.5.mod (nostruct-align/1fbr.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1fbr/nostruct-align/1fbr.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.436689 /projects/compbio/experiments/models.97/pdb/1l/1l2iA/nostruct-align/1l2iA.t2k-w0.5.mod(22): Reading nostruct-align/1l2iA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc41-5462/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1l/1l2iA/nostruct-align/1l2iA.t2k-w0.5.mod (nostruct-align/1l2iA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1l/1l2iA/nostruct-align/1l2iA.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.052675 /projects/compbio/experiments/models.97/pdb/1f/1fd2/nostruct-align/1fd2.t2k-w0.5.mod(21): Reading nostruct-align/1fd2.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc56-27819/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1fd2/nostruct-align/1fd2.t2k-w0.5.mod (nostruct-align/1fd2.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1fd2/nostruct-align/1fd2.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.404678 /projects/compbio/experiments/models.97/pdb/1r/1rdj1/nostruct-align/1rdj1.t2k-w0.5.mod(21): Reading nostruct-align/1rdj1.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc87-20190/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1r/1rdj1/nostruct-align/1rdj1.t2k-w0.5.mod (nostruct-align/1rdj1.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1r/1rdj1/nostruct-align/1rdj1.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.684679 /projects/compbio/experiments/models.97/pdb/1g/1gqeA/nostruct-align/1gqeA.t2k-w0.5.mod(22): Reading nostruct-align/1gqeA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc36-12518/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1g/1gqeA/nostruct-align/1gqeA.t2k-w0.5.mod (nostruct-align/1gqeA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1g/1gqeA/nostruct-align/1gqeA.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.737671 /projects/compbio/experiments/models.97/pdb/1m/1mn1/nostruct-align/1mn1.t2k-w0.5.mod(21): Reading nostruct-align/1mn1.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc19-2849/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1m/1mn1/nostruct-align/1mn1.t2k-w0.5.mod (nostruct-align/1mn1.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1m/1mn1/nostruct-align/1mn1.t2k-w0.5.mod . Average NLL-Simple NULL score: -22.140686 /projects/compbio/experiments/models.97/pdb/1e/1ejgA/nostruct-align/1ejgA.t2k-w0.5.mod(22): Reading nostruct-align/1ejgA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc43-9008/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1ejgA/nostruct-align/1ejgA.t2k-w0.5.mod (nostruct-align/1ejgA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1ejgA/nostruct-align/1ejgA.t2k-w0.5.mod . Average NLL-Simple NULL score: -15.481683 /projects/compbio/experiments/models.97/pdb/3m/3mag/nostruct-align/3mag.t2k-w0.5.mod(22): Reading nostruct-align/3mag.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc75-18529/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/3m/3mag/nostruct-align/3mag.t2k-w0.5.mod (nostruct-align/3mag.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/3m/3mag/nostruct-align/3mag.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.242676 /projects/compbio/experiments/models.97/pdb/1q/1qhdA/nostruct-align/1qhdA.t2k-w0.5.mod(22): Reading nostruct-align/1qhdA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc72-25510/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1q/1qhdA/nostruct-align/1qhdA.t2k-w0.5.mod (nostruct-align/1qhdA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1q/1qhdA/nostruct-align/1qhdA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.434696 /projects/compbio/experiments/models.97/pdb/1f/1fca/nostruct-align/1fca.t2k-w0.5.mod(21): Reading nostruct-align/1fca.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc42-27460/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1fca/nostruct-align/1fca.t2k-w0.5.mod (nostruct-align/1fca.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1fca/nostruct-align/1fca.t2k-w0.5.mod . Average NLL-Simple NULL score: -15.962674 /projects/compbio/experiments/models.97/pdb/1b/1b4aA/nostruct-align/1b4aA.t2k-w0.5.mod(21): Reading nostruct-align/1b4aA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc88-9386/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1b/1b4aA/nostruct-align/1b4aA.t2k-w0.5.mod (nostruct-align/1b4aA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1b/1b4aA/nostruct-align/1b4aA.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.835699 /projects/compbio/experiments/models.97/pdb/3l/3ladA/nostruct-align/3ladA.t2k-w0.5.mod(21): Reading nostruct-align/3ladA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc87-2573/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/3l/3ladA/nostruct-align/3ladA.t2k-w0.5.mod (nostruct-align/3ladA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/3l/3ladA/nostruct-align/3ladA.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.520695 /projects/compbio/experiments/models.97/pdb/1j/1jg5A/nostruct-align/1jg5A.t2k-w0.5.mod(22): Reading nostruct-align/1jg5A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc72-27124/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1j/1jg5A/nostruct-align/1jg5A.t2k-w0.5.mod (nostruct-align/1jg5A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1j/1jg5A/nostruct-align/1jg5A.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.838699 /projects/compbio/experiments/models.97/pdb/1t/1tvs/nostruct-align/1tvs.t2k-w0.5.mod(21): Reading nostruct-align/1tvs.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc52-15982/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1t/1tvs/nostruct-align/1tvs.t2k-w0.5.mod (nostruct-align/1tvs.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1t/1tvs/nostruct-align/1tvs.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.150675 /projects/compbio/experiments/models.97/pdb/1f/1fce/nostruct-align/1fce.t2k-w0.5.mod(21): Reading nostruct-align/1fce.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc50-3127/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1fce/nostruct-align/1fce.t2k-w0.5.mod (nostruct-align/1fce.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1fce/nostruct-align/1fce.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.574682 /projects/compbio/experiments/models.97/pdb/1t/1tvt/nostruct-align/1tvt.t2k-w0.5.mod(21): Reading nostruct-align/1tvt.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc23-16781/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1t/1tvt/nostruct-align/1tvt.t2k-w0.5.mod (nostruct-align/1tvt.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1t/1tvt/nostruct-align/1tvt.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.150675 /projects/compbio/experiments/models.97/pdb/1t/1trrA/nostruct-align/1trrA.t2k-w0.5.mod(21): Reading nostruct-align/1trrA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc87-26952/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1t/1trrA/nostruct-align/1trrA.t2k-w0.5.mod (nostruct-align/1trrA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1t/1trrA/nostruct-align/1trrA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.912678 /projects/compbio/experiments/models.97/pdb/1f/1fo5A/nostruct-align/1fo5A.t2k-w0.5.mod(21): Reading nostruct-align/1fo5A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc07-9275/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1fo5A/nostruct-align/1fo5A.t2k-w0.5.mod (nostruct-align/1fo5A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1fo5A/nostruct-align/1fo5A.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.311674 /projects/compbio/experiments/models.97/pdb/1m/1mmc/nostruct-align/1mmc.t2k-w0.5.mod(21): Reading nostruct-align/1mmc.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc66-1105/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1m/1mmc/nostruct-align/1mmc.t2k-w0.5.mod (nostruct-align/1mmc.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1m/1mmc/nostruct-align/1mmc.t2k-w0.5.mod . Average NLL-Simple NULL score: -14.904675 /projects/compbio/experiments/models.97/pdb/1c/1cl1A/nostruct-align/1cl1A.t2k-w0.5.mod(22): Reading nostruct-align/1cl1A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc35-28262/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1c/1cl1A/nostruct-align/1cl1A.t2k-w0.5.mod (nostruct-align/1cl1A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1c/1cl1A/nostruct-align/1cl1A.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.681696 /projects/compbio/experiments/models.97/pdb/1c/1cjsA/nostruct-align/1cjsA.t2k-w0.5.mod(21): Reading nostruct-align/1cjsA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc41-10627/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1c/1cjsA/nostruct-align/1cjsA.t2k-w0.5.mod (nostruct-align/1cjsA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1c/1cjsA/nostruct-align/1cjsA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.847675 /projects/compbio/experiments/models.97/pdb/1c/1c7qA/nostruct-align/1c7qA.t2k-w0.5.mod(21): Reading nostruct-align/1c7qA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc82-15748/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1c/1c7qA/nostruct-align/1c7qA.t2k-w0.5.mod (nostruct-align/1c7qA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1c/1c7qA/nostruct-align/1c7qA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.395693 /projects/compbio/experiments/models.97/pdb/1k/1k6dA/nostruct-align/1k6dA.t2k-w0.5.mod(22): Reading nostruct-align/1k6dA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc71-14695/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1k/1k6dA/nostruct-align/1k6dA.t2k-w0.5.mod (nostruct-align/1k6dA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1k/1k6dA/nostruct-align/1k6dA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.616688 /projects/compbio/experiments/models.97/pdb/1g/1gd1O/nostruct-align/1gd1O.t2k-w0.5.mod(22): Reading nostruct-align/1gd1O.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc62-7718/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1g/1gd1O/nostruct-align/1gd1O.t2k-w0.5.mod (nostruct-align/1gd1O.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1g/1gd1O/nostruct-align/1gd1O.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.971695 /projects/compbio/experiments/models.97/pdb/1f/1fct/nostruct-align/1fct.t2k-w0.5.mod(21): Reading nostruct-align/1fct.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc55-15656/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1fct/nostruct-align/1fct.t2k-w0.5.mod (nostruct-align/1fct.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1fct/nostruct-align/1fct.t2k-w0.5.mod . Average NLL-Simple NULL score: -16.152670 /projects/compbio/experiments/models.97/pdb/1m/1mml/nostruct-align/1mml.t2k-w0.5.mod(22): Reading nostruct-align/1mml.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc53-948/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1m/1mml/nostruct-align/1mml.t2k-w0.5.mod (nostruct-align/1mml.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1m/1mml/nostruct-align/1mml.t2k-w0.5.mod . Average NLL-Simple NULL score: -22.533699 /projects/compbio/experiments/models.97/pdb/1p/1p32A/nostruct-align/1p32A.t2k-w0.5.mod(21): Reading nostruct-align/1p32A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc62-8889/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1p/1p32A/nostruct-align/1p32A.t2k-w0.5.mod (nostruct-align/1p32A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1p/1p32A/nostruct-align/1p32A.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.201677 /projects/compbio/experiments/models.97/pdb/1n/1nstA/nostruct-align/1nstA.t2k-w0.5.mod(22): Reading nostruct-align/1nstA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc38-25494/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1n/1nstA/nostruct-align/1nstA.t2k-w0.5.mod (nostruct-align/1nstA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1n/1nstA/nostruct-align/1nstA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.384672 /projects/compbio/experiments/models.97/pdb/1k/1kppA/nostruct-align/1kppA.t2k-w0.5.mod(22): Reading nostruct-align/1kppA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc60-4406/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1k/1kppA/nostruct-align/1kppA.t2k-w0.5.mod (nostruct-align/1kppA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1k/1kppA/nostruct-align/1kppA.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.172672 /projects/compbio/experiments/models.97/pdb/1p/1p32C/nostruct-align/1p32C.t2k-w0.5.mod(21): Reading nostruct-align/1p32C.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc72-32676/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1p/1p32C/nostruct-align/1p32C.t2k-w0.5.mod (nostruct-align/1p32C.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1p/1p32C/nostruct-align/1p32C.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.945684 /projects/compbio/experiments/models.97/pdb/1m/1mmq/nostruct-align/1mmq.t2k-w0.5.mod(21): Reading nostruct-align/1mmq.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc61-23720/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1m/1mmq/nostruct-align/1mmq.t2k-w0.5.mod (nostruct-align/1mmq.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1m/1mmq/nostruct-align/1mmq.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.377674 /projects/compbio/experiments/models.97/pdb/1l/1ln4A/nostruct-align/1ln4A.t2k-w0.5.mod(22): Reading nostruct-align/1ln4A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc62-4550/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1l/1ln4A/nostruct-align/1ln4A.t2k-w0.5.mod (nostruct-align/1ln4A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1l/1ln4A/nostruct-align/1ln4A.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.848675 /projects/compbio/experiments/models.97/pdb/1e/1ejhA/nostruct-align/1ejhA.t2k-w0.5.mod(21): Reading nostruct-align/1ejhA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc55-15772/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1ejhA/nostruct-align/1ejhA.t2k-w0.5.mod (nostruct-align/1ejhA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1ejhA/nostruct-align/1ejhA.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.382683 /projects/compbio/experiments/models.97/pdb/1t/1tkiA/nostruct-align/1tkiA.t2k-w0.5.mod(21): Reading nostruct-align/1tkiA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc30-18579/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1t/1tkiA/nostruct-align/1tkiA.t2k-w0.5.mod (nostruct-align/1tkiA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1t/1tkiA/nostruct-align/1tkiA.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.287695 /projects/compbio/experiments/models.97/pdb/1i/1iirA/nostruct-align/1iirA.t2k-w0.5.mod(22): Reading nostruct-align/1iirA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc42-26310/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1i/1iirA/nostruct-align/1iirA.t2k-w0.5.mod (nostruct-align/1iirA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1i/1iirA/nostruct-align/1iirA.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.579683 /projects/compbio/experiments/models.97/pdb/1i/1i6pA/nostruct-align/1i6pA.t2k-w0.5.mod(21): Reading nostruct-align/1i6pA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc55-27831/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1i/1i6pA/nostruct-align/1i6pA.t2k-w0.5.mod (nostruct-align/1i6pA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1i/1i6pA/nostruct-align/1i6pA.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.893696 /projects/compbio/experiments/models.97/pdb/1b/1b4bA/nostruct-align/1b4bA.t2k-w0.5.mod(21): Reading nostruct-align/1b4bA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc03-30945/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1b/1b4bA/nostruct-align/1b4bA.t2k-w0.5.mod (nostruct-align/1b4bA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1b/1b4bA/nostruct-align/1b4bA.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.580698 /projects/compbio/experiments/models.97/pdb/1f/1f3lA/nostruct-align/1f3lA.t2k-w0.5.mod(21): Reading nostruct-align/1f3lA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc74-6325/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1f3lA/nostruct-align/1f3lA.t2k-w0.5.mod (nostruct-align/1f3lA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1f3lA/nostruct-align/1f3lA.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.458691 /projects/compbio/experiments/models.97/pdb/1d/1dulA/nostruct-align/1dulA.t2k-w0.5.mod(22): Reading nostruct-align/1dulA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc64-12383/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1d/1dulA/nostruct-align/1dulA.t2k-w0.5.mod (nostruct-align/1dulA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1d/1dulA/nostruct-align/1dulA.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.000673 /projects/compbio/experiments/models.97/pdb/1a/1a0sP/nostruct-align/1a0sP.t2k-w0.5.mod(21): Reading nostruct-align/1a0sP.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc15-32217/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1a/1a0sP/nostruct-align/1a0sP.t2k-w0.5.mod (nostruct-align/1a0sP.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1a/1a0sP/nostruct-align/1a0sP.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.394690 /projects/compbio/experiments/models.97/pdb/1f/1fdd/nostruct-align/1fdd.t2k-w0.5.mod(21): Reading nostruct-align/1fdd.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc02-12736/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1fdd/nostruct-align/1fdd.t2k-w0.5.mod (nostruct-align/1fdd.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1fdd/nostruct-align/1fdd.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.684690 /projects/compbio/experiments/models.97/pdb/1g/1g10A/nostruct-align/1g10A.t2k-w0.5.mod(21): Reading nostruct-align/1g10A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc89-16579/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1g/1g10A/nostruct-align/1g10A.t2k-w0.5.mod (nostruct-align/1g10A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1g/1g10A/nostruct-align/1g10A.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.543686 /projects/compbio/experiments/models.97/pdb/1g/1gd2E/nostruct-align/1gd2E.t2k-w0.5.mod(22): Reading nostruct-align/1gd2E.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc61-5429/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1g/1gd2E/nostruct-align/1gd2E.t2k-w0.5.mod (nostruct-align/1gd2E.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1g/1gd2E/nostruct-align/1gd2E.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.753672 /projects/compbio/experiments/models.97/pdb/1f/1fdi/nostruct-align/1fdi.t2k-w0.5.mod(22): Reading nostruct-align/1fdi.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc70-31391/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1fdi/nostruct-align/1fdi.t2k-w0.5.mod (nostruct-align/1fdi.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1fdi/nostruct-align/1fdi.t2k-w0.5.mod . Average NLL-Simple NULL score: -25.465683 /projects/compbio/experiments/models.97/pdb/1g/1gd2G/nostruct-align/1gd2G.t2k-w0.5.mod(21): Reading nostruct-align/1gd2G.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc68-15542/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1g/1gd2G/nostruct-align/1gd2G.t2k-w0.5.mod (nostruct-align/1gd2G.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1g/1gd2G/nostruct-align/1gd2G.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.283689 /projects/compbio/experiments/models.97/pdb/1j/1jmaA/nostruct-align/1jmaA.t2k-w0.5.mod(22): Reading nostruct-align/1jmaA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc50-13209/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1j/1jmaA/nostruct-align/1jmaA.t2k-w0.5.mod (nostruct-align/1jmaA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1j/1jmaA/nostruct-align/1jmaA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.064674 /projects/compbio/experiments/models.97/pdb/1c/1cjtA/nostruct-align/1cjtA.t2k-w0.5.mod(22): Reading nostruct-align/1cjtA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc34-5974/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1c/1cjtA/nostruct-align/1cjtA.t2k-w0.5.mod (nostruct-align/1cjtA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1c/1cjtA/nostruct-align/1cjtA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.517689 /projects/compbio/experiments/models.97/pdb/1g/1gd2I/nostruct-align/1gd2I.t2k-w0.5.mod(21): Reading nostruct-align/1gd2I.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc64-13792/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1g/1gd2I/nostruct-align/1gd2I.t2k-w0.5.mod (nostruct-align/1gd2I.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1g/1gd2I/nostruct-align/1gd2I.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.048700 /projects/compbio/experiments/models.97/pdb/1c/1cl2A/nostruct-align/1cl2A.t2k-w0.5.mod(21): Reading nostruct-align/1cl2A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc53-27794/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1c/1cl2A/nostruct-align/1cl2A.t2k-w0.5.mod (nostruct-align/1cl2A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1c/1cl2A/nostruct-align/1cl2A.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.620695 /projects/compbio/experiments/models.97/pdb/1m/1mnd/nostruct-align/1mnd.t2k-w0.5.mod(21): Reading nostruct-align/1mnd.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc27-22683/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1m/1mnd/nostruct-align/1mnd.t2k-w0.5.mod (nostruct-align/1mnd.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1m/1mnd/nostruct-align/1mnd.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.953678 /projects/compbio/experiments/models.97/pdb/1f/1fdm/nostruct-align/1fdm.t2k-w0.5.mod(21): Reading nostruct-align/1fdm.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc64-20940/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1fdm/nostruct-align/1fdm.t2k-w0.5.mod (nostruct-align/1fdm.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1fdm/nostruct-align/1fdm.t2k-w0.5.mod . Average NLL-Simple NULL score: -16.474695 /projects/compbio/experiments/models.97/pdb/1f/1fdo/nostruct-align/1fdo.t2k-w0.5.mod(22): Reading nostruct-align/1fdo.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc29-22027/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1fdo/nostruct-align/1fdo.t2k-w0.5.mod (nostruct-align/1fdo.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1fdo/nostruct-align/1fdo.t2k-w0.5.mod . Average NLL-Simple NULL score: -25.637690 /projects/compbio/experiments/models.97/pdb/1x/1xyfA/nostruct-align/1xyfA.t2k-w0.5.mod(21): Reading nostruct-align/1xyfA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc23-28038/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1x/1xyfA/nostruct-align/1xyfA.t2k-w0.5.mod (nostruct-align/1xyfA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1x/1xyfA/nostruct-align/1xyfA.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.924685 /projects/compbio/experiments/models.97/pdb/1f/1fdr/nostruct-align/1fdr.t2k-w0.5.mod(21): Reading nostruct-align/1fdr.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc39-31426/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1fdr/nostruct-align/1fdr.t2k-w0.5.mod (nostruct-align/1fdr.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1fdr/nostruct-align/1fdr.t2k-w0.5.mod . Average NLL-Simple NULL score: -22.798674 /projects/compbio/experiments/models.97/pdb/1b/1bw6A/nostruct-align/1bw6A.t2k-w0.5.mod(21): Reading nostruct-align/1bw6A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc52-16388/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1b/1bw6A/nostruct-align/1bw6A.t2k-w0.5.mod (nostruct-align/1bw6A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1b/1bw6A/nostruct-align/1bw6A.t2k-w0.5.mod . Average NLL-Simple NULL score: -16.544674 /projects/compbio/experiments/models.97/pdb/1f/1fds/nostruct-align/1fds.t2k-w0.5.mod(21): Reading nostruct-align/1fds.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc36-26035/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1fds/nostruct-align/1fds.t2k-w0.5.mod (nostruct-align/1fds.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1fds/nostruct-align/1fds.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.526674 /projects/compbio/experiments/models.97/pdb/1j/1jtkA/nostruct-align/1jtkA.t2k-w0.5.mod(22): Reading nostruct-align/1jtkA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc51-3272/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1j/1jtkA/nostruct-align/1jtkA.t2k-w0.5.mod (nostruct-align/1jtkA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1j/1jtkA/nostruct-align/1jtkA.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.746685 /projects/compbio/experiments/models.97/pdb/2i/2itg/nostruct-align/2itg.t2k-w0.5.mod(21): Reading nostruct-align/2itg.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc86-11376/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/2i/2itg/nostruct-align/2itg.t2k-w0.5.mod (nostruct-align/2itg.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/2i/2itg/nostruct-align/2itg.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.957684 /projects/compbio/experiments/models.97/pdb/1t/1txb/nostruct-align/1txb.t2k-w0.5.mod(21): Reading nostruct-align/1txb.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc58-13627/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1t/1txb/nostruct-align/1txb.t2k-w0.5.mod (nostruct-align/1txb.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1t/1txb/nostruct-align/1txb.t2k-w0.5.mod . Average NLL-Simple NULL score: -16.236694 /projects/compbio/experiments/models.97/pdb/1f/1fdt/nostruct-align/1fdt.t2k-w0.5.mod(21): Reading nostruct-align/1fdt.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc04-5832/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1fdt/nostruct-align/1fdt.t2k-w0.5.mod (nostruct-align/1fdt.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1fdt/nostruct-align/1fdt.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.664686 /projects/compbio/experiments/models.97/pdb/1k/1kigI/nostruct-align/1kigI.t2k-w0.5.mod(21): Reading nostruct-align/1kigI.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc19-9695/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1k/1kigI/nostruct-align/1kigI.t2k-w0.5.mod (nostruct-align/1kigI.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1k/1kigI/nostruct-align/1kigI.t2k-w0.5.mod . Average NLL-Simple NULL score: -16.230692 /projects/compbio/experiments/models.97/pdb/1k/1kigL/nostruct-align/1kigL.t2k-w0.5.mod(21): Reading nostruct-align/1kigL.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc05-24468/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1k/1kigL/nostruct-align/1kigL.t2k-w0.5.mod (nostruct-align/1kigL.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1k/1kigL/nostruct-align/1kigL.t2k-w0.5.mod . Average NLL-Simple NULL score: -15.599679 /projects/compbio/experiments/models.97/pdb/1t/1txm/nostruct-align/1txm.t2k-w0.5.mod(21): Reading nostruct-align/1txm.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc86-14904/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1t/1txm/nostruct-align/1txm.t2k-w0.5.mod (nostruct-align/1txm.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1t/1txm/nostruct-align/1txm.t2k-w0.5.mod . Average NLL-Simple NULL score: -15.086683 /projects/compbio/experiments/models.97/pdb/1g/1gxqA/nostruct-align/1gxqA.t2k-w0.5.mod(22): Reading nostruct-align/1gxqA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc77-20657/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1g/1gxqA/nostruct-align/1gxqA.t2k-w0.5.mod (nostruct-align/1gxqA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1g/1gxqA/nostruct-align/1gxqA.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.737698 /projects/compbio/experiments/models.97/pdb/1k/1ky9A/nostruct-align/1ky9A.t2k-w0.5.mod(22): Reading nostruct-align/1ky9A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc62-25026/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1k/1ky9A/nostruct-align/1ky9A.t2k-w0.5.mod (nostruct-align/1ky9A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1k/1ky9A/nostruct-align/1ky9A.t2k-w0.5.mod . Average NLL-Simple NULL score: -22.373695 /projects/compbio/experiments/models.97/pdb/1q/1qhfA/nostruct-align/1qhfA.t2k-w0.5.mod(21): Reading nostruct-align/1qhfA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc28-22295/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1q/1qhfA/nostruct-align/1qhfA.t2k-w0.5.mod (nostruct-align/1qhfA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1q/1qhfA/nostruct-align/1qhfA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.687689 /projects/compbio/experiments/models.97/pdb/1b/1bgeB/nostruct-align/1bgeB.t2k-w0.5.mod(21): Reading nostruct-align/1bgeB.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc15-6794/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1b/1bgeB/nostruct-align/1bgeB.t2k-w0.5.mod (nostruct-align/1bgeB.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1b/1bgeB/nostruct-align/1bgeB.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.723686 /projects/compbio/experiments/models.97/pdb/1b/1b4cA/nostruct-align/1b4cA.t2k-w0.5.mod(21): Reading nostruct-align/1b4cA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc41-4766/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1b/1b4cA/nostruct-align/1b4cA.t2k-w0.5.mod (nostruct-align/1b4cA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1b/1b4cA/nostruct-align/1b4cA.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.708670 /projects/compbio/experiments/models.97/pdb/1k/1ky9B/nostruct-align/1ky9B.t2k-w0.5.mod(22): Reading nostruct-align/1ky9B.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc51-3691/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1k/1ky9B/nostruct-align/1ky9B.t2k-w0.5.mod (nostruct-align/1ky9B.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1k/1ky9B/nostruct-align/1ky9B.t2k-w0.5.mod . Average NLL-Simple NULL score: -22.029676 /projects/compbio/experiments/models.97/pdb/1j/1jeyA/nostruct-align/1jeyA.t2k-w0.5.mod(22): Reading nostruct-align/1jeyA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc74-4111/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1j/1jeyA/nostruct-align/1jeyA.t2k-w0.5.mod (nostruct-align/1jeyA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1j/1jeyA/nostruct-align/1jeyA.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.893677 /projects/compbio/experiments/models.97/pdb/1f/1f3mA/nostruct-align/1f3mA.t2k-w0.5.mod(22): Reading nostruct-align/1f3mA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc20-10791/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1f3mA/nostruct-align/1f3mA.t2k-w0.5.mod (nostruct-align/1f3mA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1f3mA/nostruct-align/1f3mA.t2k-w0.5.mod . Average NLL-Simple NULL score: -16.632671 /projects/compbio/experiments/models.97/pdb/1j/1jeyB/nostruct-align/1jeyB.t2k-w0.5.mod(22): Reading nostruct-align/1jeyB.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc69-27318/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1j/1jeyB/nostruct-align/1jeyB.t2k-w0.5.mod (nostruct-align/1jeyB.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1j/1jeyB/nostruct-align/1jeyB.t2k-w0.5.mod . Average NLL-Simple NULL score: -25.453684 /projects/compbio/experiments/models.97/pdb/1a/1a0tP/nostruct-align/1a0tP.t2k-w0.5.mod(21): Reading nostruct-align/1a0tP.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc60-22487/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1a/1a0tP/nostruct-align/1a0tP.t2k-w0.5.mod (nostruct-align/1a0tP.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1a/1a0tP/nostruct-align/1a0tP.t2k-w0.5.mod . Average NLL-Simple NULL score: -22.081692 /projects/compbio/experiments/models.97/pdb/1f/1f3mC/nostruct-align/1f3mC.t2k-w0.5.mod(21): Reading nostruct-align/1f3mC.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc86-8564/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1f3mC/nostruct-align/1f3mC.t2k-w0.5.mod (nostruct-align/1f3mC.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1f3mC/nostruct-align/1f3mC.t2k-w0.5.mod . Average NLL-Simple NULL score: -22.275684 /projects/compbio/experiments/models.97/pdb/1q/1qopA/nostruct-align/1qopA.t2k-w0.5.mod(22): Reading nostruct-align/1qopA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc33-3431/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1q/1qopA/nostruct-align/1qopA.t2k-w0.5.mod (nostruct-align/1qopA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1q/1qopA/nostruct-align/1qopA.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.635685 /projects/compbio/experiments/models.97/pdb/1q/1qopB/nostruct-align/1qopB.t2k-w0.5.mod(22): Reading nostruct-align/1qopB.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc73-27242/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1q/1qopB/nostruct-align/1qopB.t2k-w0.5.mod (nostruct-align/1qopB.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1q/1qopB/nostruct-align/1qopB.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.139692 /projects/compbio/experiments/models.97/pdb/1c/1c7sA/nostruct-align/1c7sA.t2k-w0.5.mod(21): Reading nostruct-align/1c7sA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc62-29836/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1c/1c7sA/nostruct-align/1c7sA.t2k-w0.5.mod (nostruct-align/1c7sA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1c/1c7sA/nostruct-align/1c7sA.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.660685 /projects/compbio/experiments/models.97/pdb/1m/1mof/nostruct-align/1mof.t2k-w0.5.mod(22): Reading nostruct-align/1mof.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc87-3672/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1m/1mof/nostruct-align/1mof.t2k-w0.5.mod (nostruct-align/1mof.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1m/1mof/nostruct-align/1mof.t2k-w0.5.mod . Average NLL-Simple NULL score: -16.557690 /projects/compbio/experiments/models.97/pdb/1k/1k6fA/nostruct-align/1k6fA.t2k-w0.5.mod(22): Reading nostruct-align/1k6fA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc22-19700/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1k/1k6fA/nostruct-align/1k6fA.t2k-w0.5.mod (nostruct-align/1k6fA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1k/1k6fA/nostruct-align/1k6fA.t2k-w0.5.mod . Average NLL-Simple NULL score: -15.273697 /projects/compbio/experiments/models.97/pdb/1m/1mwpA/nostruct-align/1mwpA.t2k-w0.5.mod(22): Reading nostruct-align/1mwpA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc58-7559/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1m/1mwpA/nostruct-align/1mwpA.t2k-w0.5.mod (nostruct-align/1mwpA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1m/1mwpA/nostruct-align/1mwpA.t2k-w0.5.mod . Average NLL-Simple NULL score: -16.892689 /projects/compbio/experiments/models.97/pdb/1d/1d3yA/nostruct-align/1d3yA.t2k-w0.5.mod(22): Reading nostruct-align/1d3yA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc77-22871/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1d/1d3yA/nostruct-align/1d3yA.t2k-w0.5.mod (nostruct-align/1d3yA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1d/1d3yA/nostruct-align/1d3yA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.692671 /projects/compbio/experiments/models.97/pdb/1l/1lenB/nostruct-align/1lenB.t2k-w0.5.mod(21): Reading nostruct-align/1lenB.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc06-23414/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1l/1lenB/nostruct-align/1lenB.t2k-w0.5.mod (nostruct-align/1lenB.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1l/1lenB/nostruct-align/1lenB.t2k-w0.5.mod . Average NLL-Simple NULL score: -16.399696 /projects/compbio/experiments/models.97/pdb/9i/9insB/nostruct-align/9insB.t2k-w0.5.mod(21): Reading nostruct-align/9insB.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc78-17158/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/9i/9insB/nostruct-align/9insB.t2k-w0.5.mod (nostruct-align/9insB.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/9i/9insB/nostruct-align/9insB.t2k-w0.5.mod . Average NLL-Simple NULL score: -15.446674 /projects/compbio/experiments/models.97/pdb/1i/1ibjA/nostruct-align/1ibjA.t2k-w0.5.mod(21): Reading nostruct-align/1ibjA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc21-10089/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1i/1ibjA/nostruct-align/1ibjA.t2k-w0.5.mod (nostruct-align/1ibjA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1i/1ibjA/nostruct-align/1ibjA.t2k-w0.5.mod . Average NLL-Simple NULL score: -22.995678 /projects/compbio/experiments/models.97/pdb/1m/1moq/nostruct-align/1moq.t2k-w0.5.mod(22): Reading nostruct-align/1moq.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc75-17946/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1m/1moq/nostruct-align/1moq.t2k-w0.5.mod (nostruct-align/1moq.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1m/1moq/nostruct-align/1moq.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.782682 /projects/compbio/experiments/models.97/pdb/1l/1l9vA/nostruct-align/1l9vA.t2k-w0.5.mod(22): Reading nostruct-align/1l9vA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc69-30784/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1l/1l9vA/nostruct-align/1l9vA.t2k-w0.5.mod (nostruct-align/1l9vA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1l/1l9vA/nostruct-align/1l9vA.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.585684 /projects/compbio/experiments/models.97/pdb/1e/1ejjA/nostruct-align/1ejjA.t2k-w0.5.mod(21): Reading nostruct-align/1ejjA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc51-24646/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1ejjA/nostruct-align/1ejjA.t2k-w0.5.mod (nostruct-align/1ejjA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1ejjA/nostruct-align/1ejjA.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.680693 /projects/compbio/experiments/models.97/pdb/1g/1gxrA/nostruct-align/1gxrA.t2k-w0.5.mod(22): Reading nostruct-align/1gxrA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc49-28981/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1g/1gxrA/nostruct-align/1gxrA.t2k-w0.5.mod (nostruct-align/1gxrA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1g/1gxrA/nostruct-align/1gxrA.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.770681 /projects/compbio/experiments/models.97/pdb/1j/1jg8A/nostruct-align/1jg8A.t2k-w0.5.mod(22): Reading nostruct-align/1jg8A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc43-10265/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1j/1jg8A/nostruct-align/1jg8A.t2k-w0.5.mod (nostruct-align/1jg8A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1j/1jg8A/nostruct-align/1jg8A.t2k-w0.5.mod . Average NLL-Simple NULL score: -23.914690 /projects/compbio/experiments/models.97/pdb/7c/7ceiB/nostruct-align/7ceiB.t2k-w0.5.mod(22): Reading nostruct-align/7ceiB.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc50-31633/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/7c/7ceiB/nostruct-align/7ceiB.t2k-w0.5.mod (nostruct-align/7ceiB.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/7c/7ceiB/nostruct-align/7ceiB.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.534679 /projects/compbio/experiments/models.97/pdb/5l/5lyz/nostruct-align/5lyz.t2k-w0.5.mod(21): Reading nostruct-align/5lyz.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc30-10276/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/5l/5lyz/nostruct-align/5lyz.t2k-w0.5.mod (nostruct-align/5lyz.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/5l/5lyz/nostruct-align/5lyz.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.140676 /projects/compbio/experiments/models.97/pdb/1n/1necA/nostruct-align/1necA.t2k-w0.5.mod(21): Reading nostruct-align/1necA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc10-1336/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1n/1necA/nostruct-align/1necA.t2k-w0.5.mod (nostruct-align/1necA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1n/1necA/nostruct-align/1necA.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.929670 /projects/compbio/experiments/models.97/pdb/1t/1tys/nostruct-align/1tys.t2k-w0.5.mod(22): Reading nostruct-align/1tys.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc54-2837/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1t/1tys/nostruct-align/1tys.t2k-w0.5.mod (nostruct-align/1tys.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1t/1tys/nostruct-align/1tys.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.437698 /projects/compbio/experiments/models.97/pdb/1g/1g12A/nostruct-align/1g12A.t2k-w0.5.mod(21): Reading nostruct-align/1g12A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc76-1901/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1g/1g12A/nostruct-align/1g12A.t2k-w0.5.mod (nostruct-align/1g12A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1g/1g12A/nostruct-align/1g12A.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.460674 /projects/compbio/experiments/models.97/pdb/1t/1tyu/nostruct-align/1tyu.t2k-w0.5.mod(21): Reading nostruct-align/1tyu.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc75-11296/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1t/1tyu/nostruct-align/1tyu.t2k-w0.5.mod (nostruct-align/1tyu.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1t/1tyu/nostruct-align/1tyu.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.885685 /projects/compbio/experiments/models.97/pdb/1l/1ltaC/nostruct-align/1ltaC.t2k-w0.5.mod(22): Reading nostruct-align/1ltaC.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc43-17224/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1l/1ltaC/nostruct-align/1ltaC.t2k-w0.5.mod (nostruct-align/1ltaC.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1l/1ltaC/nostruct-align/1ltaC.t2k-w0.5.mod . Average NLL-Simple NULL score: -16.476677 /projects/compbio/experiments/models.97/pdb/1t/1tyv/nostruct-align/1tyv.t2k-w0.5.mod(22): Reading nostruct-align/1tyv.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc70-22314/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1t/1tyv/nostruct-align/1tyv.t2k-w0.5.mod (nostruct-align/1tyv.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1t/1tyv/nostruct-align/1tyv.t2k-w0.5.mod . Average NLL-Simple NULL score: -22.255688 /projects/compbio/experiments/models.97/pdb/1m/1mpgA/nostruct-align/1mpgA.t2k-w0.5.mod(22): Reading nostruct-align/1mpgA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc44-19733/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1m/1mpgA/nostruct-align/1mpgA.t2k-w0.5.mod (nostruct-align/1mpgA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1m/1mpgA/nostruct-align/1mpgA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.745693 /projects/compbio/experiments/models.97/pdb/1f/1fo8A/nostruct-align/1fo8A.t2k-w0.5.mod(22): Reading nostruct-align/1fo8A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc28-2202/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1fo8A/nostruct-align/1fo8A.t2k-w0.5.mod (nostruct-align/1fo8A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1fo8A/nostruct-align/1fo8A.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.576674 /projects/compbio/experiments/models.97/pdb/1m/1mpb/nostruct-align/1mpb.t2k-w0.5.mod(21): Reading nostruct-align/1mpb.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc98-7287/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1m/1mpb/nostruct-align/1mpb.t2k-w0.5.mod (nostruct-align/1mpb.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1m/1mpb/nostruct-align/1mpb.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.260691 /projects/compbio/experiments/models.97/pdb/1j/1jmcA/nostruct-align/1jmcA.t2k-w0.5.mod(22): Reading nostruct-align/1jmcA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc66-2827/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1j/1jmcA/nostruct-align/1jmcA.t2k-w0.5.mod (nostruct-align/1jmcA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1j/1jmcA/nostruct-align/1jmcA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.008673 /projects/compbio/experiments/models.97/pdb/1c/1cl4A/nostruct-align/1cl4A.t2k-w0.5.mod(21): Reading nostruct-align/1cl4A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc10-25741/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1c/1cl4A/nostruct-align/1cl4A.t2k-w0.5.mod (nostruct-align/1cl4A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1c/1cl4A/nostruct-align/1cl4A.t2k-w0.5.mod . Average NLL-Simple NULL score: -15.053689 /projects/compbio/experiments/models.97/pdb/1b/1bw8A/nostruct-align/1bw8A.t2k-w0.5.mod(21): Reading nostruct-align/1bw8A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc45-11938/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1b/1bw8A/nostruct-align/1bw8A.t2k-w0.5.mod (nostruct-align/1bw8A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1b/1bw8A/nostruct-align/1bw8A.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.184679 /projects/compbio/experiments/models.97/pdb/1p/1p35A/nostruct-align/1p35A.t2k-w0.5.mod(22): Reading nostruct-align/1p35A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc28-3510/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1p/1p35A/nostruct-align/1p35A.t2k-w0.5.mod (nostruct-align/1p35A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1p/1p35A/nostruct-align/1p35A.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.407688 /projects/compbio/experiments/models.97/pdb/3f/3fisA/nostruct-align/3fisA.t2k-w0.5.mod(22): Reading nostruct-align/3fisA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc67-30791/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/3f/3fisA/nostruct-align/3fisA.t2k-w0.5.mod (nostruct-align/3fisA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/3f/3fisA/nostruct-align/3fisA.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.987679 /projects/compbio/experiments/models.97/pdb/1m/1mpp/nostruct-align/1mpp.t2k-w0.5.mod(21): Reading nostruct-align/1mpp.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc53-2859/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1m/1mpp/nostruct-align/1mpp.t2k-w0.5.mod (nostruct-align/1mpp.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1m/1mpp/nostruct-align/1mpp.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.034689 /projects/compbio/experiments/models.97/pdb/1k/1kpsB/nostruct-align/1kpsB.t2k-w0.5.mod(22): Reading nostruct-align/1kpsB.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc20-21897/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1k/1kpsB/nostruct-align/1kpsB.t2k-w0.5.mod (nostruct-align/1kpsB.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1k/1kpsB/nostruct-align/1kpsB.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.334671 /projects/compbio/experiments/models.97/pdb/1h/1hfeL/nostruct-align/1hfeL.t2k-w0.5.mod(22): Reading nostruct-align/1hfeL.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc47-21800/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1h/1hfeL/nostruct-align/1hfeL.t2k-w0.5.mod (nostruct-align/1hfeL.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1h/1hfeL/nostruct-align/1hfeL.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.458691 /projects/compbio/experiments/models.97/pdb/1i/1i81A/nostruct-align/1i81A.t2k-w0.5.mod(22): Reading nostruct-align/1i81A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc59-23057/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1i/1i81A/nostruct-align/1i81A.t2k-w0.5.mod (nostruct-align/1i81A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1i/1i81A/nostruct-align/1i81A.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.589678 /projects/compbio/experiments/models.97/pdb/1q/1qhhA/nostruct-align/1qhhA.t2k-w0.5.mod(22): Reading nostruct-align/1qhhA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc68-19982/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1q/1qhhA/nostruct-align/1qhhA.t2k-w0.5.mod (nostruct-align/1qhhA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1q/1qhhA/nostruct-align/1qhhA.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.137688 /projects/compbio/experiments/models.97/pdb/1b/1b4eA/nostruct-align/1b4eA.t2k-w0.5.mod(21): Reading nostruct-align/1b4eA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc88-25290/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1b/1b4eA/nostruct-align/1b4eA.t2k-w0.5.mod (nostruct-align/1b4eA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1b/1b4eA/nostruct-align/1b4eA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.287685 /projects/compbio/experiments/models.97/pdb/1q/1qhhC/nostruct-align/1qhhC.t2k-w0.5.mod(22): Reading nostruct-align/1qhhC.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc33-4285/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1q/1qhhC/nostruct-align/1qhhC.t2k-w0.5.mod (nostruct-align/1qhhC.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1q/1qhhC/nostruct-align/1qhhC.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.722687 /projects/compbio/experiments/models.97/pdb/1h/1hfeS/nostruct-align/1hfeS.t2k-w0.5.mod(22): Reading nostruct-align/1hfeS.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc58-6347/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1h/1hfeS/nostruct-align/1hfeS.t2k-w0.5.mod (nostruct-align/1hfeS.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1h/1hfeS/nostruct-align/1hfeS.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.715673 /projects/compbio/experiments/models.97/pdb/1q/1qhhD/nostruct-align/1qhhD.t2k-w0.5.mod(22): Reading nostruct-align/1qhhD.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc44-22765/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1q/1qhhD/nostruct-align/1qhhD.t2k-w0.5.mod (nostruct-align/1qhhD.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1q/1qhhD/nostruct-align/1qhhD.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.988699 /projects/compbio/experiments/models.97/pdb/1h/1htyA/nostruct-align/1htyA.t2k-w0.5.mod(22): Reading nostruct-align/1htyA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc45-20331/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1h/1htyA/nostruct-align/1htyA.t2k-w0.5.mod (nostruct-align/1htyA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1h/1htyA/nostruct-align/1htyA.t2k-w0.5.mod . Average NLL-Simple NULL score: -24.655674 /projects/compbio/experiments/models.97/pdb/2c/2chsA/nostruct-align/2chsA.t2k-w0.5.mod(21): Reading nostruct-align/2chsA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc62-9192/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/2c/2chsA/nostruct-align/2chsA.t2k-w0.5.mod (nostruct-align/2chsA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/2c/2chsA/nostruct-align/2chsA.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.871695 /projects/compbio/experiments/models.97/pdb/1s/1svpA/nostruct-align/1svpA.t2k-w0.5.mod(22): Reading nostruct-align/1svpA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc44-1496/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1s/1svpA/nostruct-align/1svpA.t2k-w0.5.mod (nostruct-align/1svpA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1s/1svpA/nostruct-align/1svpA.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.060694 /projects/compbio/experiments/models.97/pdb/1n/1nedA/nostruct-align/1nedA.t2k-w0.5.mod(21): Reading nostruct-align/1nedA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc67-26306/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1n/1nedA/nostruct-align/1nedA.t2k-w0.5.mod (nostruct-align/1nedA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1n/1nedA/nostruct-align/1nedA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.387690 /projects/compbio/experiments/models.97/pdb/1g/1gd5A/nostruct-align/1gd5A.t2k-w0.5.mod(21): Reading nostruct-align/1gd5A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc72-27535/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1g/1gd5A/nostruct-align/1gd5A.t2k-w0.5.mod (nostruct-align/1gd5A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1g/1gd5A/nostruct-align/1gd5A.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.247694 /projects/compbio/experiments/models.97/pdb/1g/1g13A/nostruct-align/1g13A.t2k-w0.5.mod(22): Reading nostruct-align/1g13A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc55-13895/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1g/1g13A/nostruct-align/1g13A.t2k-w0.5.mod (nostruct-align/1g13A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1g/1g13A/nostruct-align/1g13A.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.071676 /projects/compbio/experiments/models.97/pdb/1f/1fge/nostruct-align/1fge.t2k-w0.5.mod(21): Reading nostruct-align/1fge.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc39-22614/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1fge/nostruct-align/1fge.t2k-w0.5.mod (nostruct-align/1fge.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1fge/nostruct-align/1fge.t2k-w0.5.mod . Average NLL-Simple NULL score: -15.005684 /projects/compbio/experiments/models.97/pdb/4u/4uagA/nostruct-align/4uagA.t2k-w0.5.mod(22): Reading nostruct-align/4uagA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc23-22384/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/4u/4uagA/nostruct-align/4uagA.t2k-w0.5.mod (nostruct-align/4uagA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/4u/4uagA/nostruct-align/4uagA.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.376675 /projects/compbio/experiments/models.97/pdb/1q/1qorA/nostruct-align/1qorA.t2k-w0.5.mod(21): Reading nostruct-align/1qorA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc19-10164/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1q/1qorA/nostruct-align/1qorA.t2k-w0.5.mod (nostruct-align/1qorA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1q/1qorA/nostruct-align/1qorA.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.264677 /projects/compbio/experiments/models.97/pdb/1c/1cjwA/nostruct-align/1cjwA.t2k-w0.5.mod(21): Reading nostruct-align/1cjwA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc76-19720/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1c/1cjwA/nostruct-align/1cjwA.t2k-w0.5.mod (nostruct-align/1cjwA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1c/1cjwA/nostruct-align/1cjwA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.017672 /projects/compbio/experiments/models.97/pdb/1k/1kijA/nostruct-align/1kijA.t2k-w0.5.mod(22): Reading nostruct-align/1kijA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc34-30250/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1k/1kijA/nostruct-align/1kijA.t2k-w0.5.mod (nostruct-align/1kijA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1k/1kijA/nostruct-align/1kijA.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.635683 /projects/compbio/experiments/models.97/pdb/2x/2xis/nostruct-align/2xis.t2k-w0.5.mod(21): Reading nostruct-align/2xis.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc78-4957/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/2x/2xis/nostruct-align/2xis.t2k-w0.5.mod (nostruct-align/2xis.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/2x/2xis/nostruct-align/2xis.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.789696 /projects/compbio/experiments/models.97/pdb/1b/1bw9A/nostruct-align/1bw9A.t2k-w0.5.mod(21): Reading nostruct-align/1bw9A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc84-31085/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1b/1bw9A/nostruct-align/1bw9A.t2k-w0.5.mod (nostruct-align/1bw9A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1b/1bw9A/nostruct-align/1bw9A.t2k-w0.5.mod . Average NLL-Simple NULL score: -22.232670 /projects/compbio/experiments/models.97/pdb/1l/1lepA/nostruct-align/1lepA.t2k-w0.5.mod(21): Reading nostruct-align/1lepA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc65-650/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1l/1lepA/nostruct-align/1lepA.t2k-w0.5.mod (nostruct-align/1lepA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1l/1lepA/nostruct-align/1lepA.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.295687 /projects/compbio/experiments/models.97/pdb/1f/1fgs/nostruct-align/1fgs.t2k-w0.5.mod(21): Reading nostruct-align/1fgs.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc51-30916/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1fgs/nostruct-align/1fgs.t2k-w0.5.mod (nostruct-align/1fgs.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1fgs/nostruct-align/1fgs.t2k-w0.5.mod . Average NLL-Simple NULL score: -22.562687 /projects/compbio/experiments/models.97/pdb/1r/1rdo1/nostruct-align/1rdo1.t2k-w0.5.mod(22): Reading nostruct-align/1rdo1.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc33-4795/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1r/1rdo1/nostruct-align/1rdo1.t2k-w0.5.mod (nostruct-align/1rdo1.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1r/1rdo1/nostruct-align/1rdo1.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.743681 /projects/compbio/experiments/models.97/pdb/1k/1kptA/nostruct-align/1kptA.t2k-w0.5.mod(22): Reading nostruct-align/1kptA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc44-21986/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1k/1kptA/nostruct-align/1kptA.t2k-w0.5.mod (nostruct-align/1kptA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1k/1kptA/nostruct-align/1kptA.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.648687 /projects/compbio/experiments/models.97/pdb/1v/1vrkB/nostruct-align/1vrkB.t2k-w0.5.mod(22): Reading nostruct-align/1vrkB.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc65-30915/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1v/1vrkB/nostruct-align/1vrkB.t2k-w0.5.mod (nostruct-align/1vrkB.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1v/1vrkB/nostruct-align/1vrkB.t2k-w0.5.mod . Average NLL-Simple NULL score: -14.832674 /projects/compbio/experiments/models.97/pdb/1h/1hmpA/nostruct-align/1hmpA.t2k-w0.5.mod(21): Reading nostruct-align/1hmpA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc76-7004/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1h/1hmpA/nostruct-align/1hmpA.t2k-w0.5.mod (nostruct-align/1hmpA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1h/1hmpA/nostruct-align/1hmpA.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.815693 /projects/compbio/experiments/models.97/pdb/2h/2hrvA/nostruct-align/2hrvA.t2k-w0.5.mod(22): Reading nostruct-align/2hrvA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc59-32693/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/2h/2hrvA/nostruct-align/2hrvA.t2k-w0.5.mod (nostruct-align/2hrvA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/2h/2hrvA/nostruct-align/2hrvA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.122675 /projects/compbio/experiments/models.97/pdb/1l/1l9xA/nostruct-align/1l9xA.t2k-w0.5.mod(22): Reading nostruct-align/1l9xA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc65-8246/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1l/1l9xA/nostruct-align/1l9xA.t2k-w0.5.mod (nostruct-align/1l9xA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1l/1l9xA/nostruct-align/1l9xA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.953676 /projects/compbio/experiments/models.97/pdb/2t/2tpsA/nostruct-align/2tpsA.t2k-w0.5.mod(22): Reading nostruct-align/2tpsA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc64-8839/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/2t/2tpsA/nostruct-align/2tpsA.t2k-w0.5.mod (nostruct-align/2tpsA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/2t/2tpsA/nostruct-align/2tpsA.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.222687 /projects/compbio/experiments/models.97/pdb/1i/1i82A/nostruct-align/1i82A.t2k-w0.5.mod(21): Reading nostruct-align/1i82A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc55-25715/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1i/1i82A/nostruct-align/1i82A.t2k-w0.5.mod (nostruct-align/1i82A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1i/1i82A/nostruct-align/1i82A.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.434671 /projects/compbio/experiments/models.97/pdb/1q/1qhiA/nostruct-align/1qhiA.t2k-w0.5.mod(21): Reading nostruct-align/1qhiA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc39-31713/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1q/1qhiA/nostruct-align/1qhiA.t2k-w0.5.mod (nostruct-align/1qhiA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1q/1qhiA/nostruct-align/1qhiA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.406673 /projects/compbio/experiments/models.97/pdb/1f/1fh0A/nostruct-align/1fh0A.t2k-w0.5.mod(21): Reading nostruct-align/1fh0A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc12-5992/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1fh0A/nostruct-align/1fh0A.t2k-w0.5.mod (nostruct-align/1fh0A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1fh0A/nostruct-align/1fh0A.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.071678 /projects/compbio/experiments/models.97/pdb/1b/1b4fA/nostruct-align/1b4fA.t2k-w0.5.mod(22): Reading nostruct-align/1b4fA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc55-10460/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1b/1b4fA/nostruct-align/1b4fA.t2k-w0.5.mod (nostruct-align/1b4fA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1b/1b4fA/nostruct-align/1b4fA.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.866686 /projects/compbio/experiments/models.97/pdb/1f/1fha/nostruct-align/1fha.t2k-w0.5.mod(21): Reading nostruct-align/1fha.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc45-28426/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1fha/nostruct-align/1fha.t2k-w0.5.mod (nostruct-align/1fha.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1fha/nostruct-align/1fha.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.512682 /projects/compbio/experiments/models.97/pdb/1d/1dupA/nostruct-align/1dupA.t2k-w0.5.mod(21): Reading nostruct-align/1dupA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc62-9447/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1d/1dupA/nostruct-align/1dupA.t2k-w0.5.mod (nostruct-align/1dupA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1d/1dupA/nostruct-align/1dupA.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.988686 /projects/compbio/experiments/models.97/pdb/1h/1hv8A/nostruct-align/1hv8A.t2k-w0.5.mod(22): Reading nostruct-align/1hv8A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc24-6168/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1h/1hv8A/nostruct-align/1hv8A.t2k-w0.5.mod (nostruct-align/1hv8A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1h/1hv8A/nostruct-align/1hv8A.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.459671 /projects/compbio/experiments/models.97/pdb/1e/1es4A/nostruct-align/1es4A.t2k-w0.5.mod(22): Reading nostruct-align/1es4A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc57-22462/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1es4A/nostruct-align/1es4A.t2k-w0.5.mod (nostruct-align/1es4A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1es4A/nostruct-align/1es4A.t2k-w0.5.mod . Average NLL-Simple NULL score: -22.544697 /projects/compbio/experiments/models.97/pdb/1k/1kbaA/nostruct-align/1kbaA.t2k-w0.5.mod(21): Reading nostruct-align/1kbaA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc43-29272/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1k/1kbaA/nostruct-align/1kbaA.t2k-w0.5.mod (nostruct-align/1kbaA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1k/1kbaA/nostruct-align/1kbaA.t2k-w0.5.mod . Average NLL-Simple NULL score: -16.140699 /projects/compbio/experiments/models.97/pdb/1b/1b4fG/nostruct-align/1b4fG.t2k-w0.5.mod(21): Reading nostruct-align/1b4fG.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc84-21350/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1b/1b4fG/nostruct-align/1b4fG.t2k-w0.5.mod (nostruct-align/1b4fG.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1b/1b4fG/nostruct-align/1b4fG.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.647682 /projects/compbio/experiments/models.97/pdb/1o/1oakA/nostruct-align/1oakA.t2k-w0.5.mod(21): Reading nostruct-align/1oakA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc51-2428/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1o/1oakA/nostruct-align/1oakA.t2k-w0.5.mod (nostruct-align/1oakA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1o/1oakA/nostruct-align/1oakA.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.781685 /projects/compbio/experiments/models.97/pdb/1q/1qq1A/nostruct-align/1qq1A.t2k-w0.5.mod(22): Reading nostruct-align/1qq1A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc86-8555/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1q/1qq1A/nostruct-align/1qq1A.t2k-w0.5.mod (nostruct-align/1qq1A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1q/1qq1A/nostruct-align/1qq1A.t2k-w0.5.mod . Average NLL-Simple NULL score: -22.096682 /projects/compbio/experiments/models.97/pdb/1j/1jmeA/nostruct-align/1jmeA.t2k-w0.5.mod(22): Reading nostruct-align/1jmeA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc61-13969/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1j/1jmeA/nostruct-align/1jmeA.t2k-w0.5.mod (nostruct-align/1jmeA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1j/1jmeA/nostruct-align/1jmeA.t2k-w0.5.mod . Average NLL-Simple NULL score: -25.796690 /projects/compbio/experiments/models.97/pdb/2b/2bnh/nostruct-align/2bnh.t2k-w0.5.mod(21): Reading nostruct-align/2bnh.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc55-21582/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/2b/2bnh/nostruct-align/2bnh.t2k-w0.5.mod (nostruct-align/2bnh.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/2b/2bnh/nostruct-align/2bnh.t2k-w0.5.mod . Average NLL-Simple NULL score: -22.397680 /projects/compbio/experiments/models.97/pdb/1c/1cjxA/nostruct-align/1cjxA.t2k-w0.5.mod(22): Reading nostruct-align/1cjxA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc20-7303/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1c/1cjxA/nostruct-align/1cjxA.t2k-w0.5.mod (nostruct-align/1cjxA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1c/1cjxA/nostruct-align/1cjxA.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.076677 /projects/compbio/experiments/models.97/pdb/1c/1c94A/nostruct-align/1c94A.t2k-w0.5.mod(22): Reading nostruct-align/1c94A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc32-23051/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1c/1c94A/nostruct-align/1c94A.t2k-w0.5.mod (nostruct-align/1c94A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1c/1c94A/nostruct-align/1c94A.t2k-w0.5.mod . Average NLL-Simple NULL score: -16.479675 /projects/compbio/experiments/models.97/pdb/1m/1mrg/nostruct-align/1mrg.t2k-w0.5.mod(21): Reading nostruct-align/1mrg.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc11-5380/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1m/1mrg/nostruct-align/1mrg.t2k-w0.5.mod (nostruct-align/1mrg.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1m/1mrg/nostruct-align/1mrg.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.392685 /projects/compbio/experiments/models.97/pdb/1k/1k6iA/nostruct-align/1k6iA.t2k-w0.5.mod(22): Reading nostruct-align/1k6iA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc59-1242/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1k/1k6iA/nostruct-align/1k6iA.t2k-w0.5.mod (nostruct-align/1k6iA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1k/1k6iA/nostruct-align/1k6iA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.789675 /projects/compbio/experiments/models.97/pdb/1m/1mrj/nostruct-align/1mrj.t2k-w0.5.mod(22): Reading nostruct-align/1mrj.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc26-13494/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1m/1mrj/nostruct-align/1mrj.t2k-w0.5.mod (nostruct-align/1mrj.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1m/1mrj/nostruct-align/1mrj.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.840670 /projects/compbio/experiments/models.97/pdb/1f/1fht/nostruct-align/1fht.t2k-w0.5.mod(21): Reading nostruct-align/1fht.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc51-1331/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1fht/nostruct-align/1fht.t2k-w0.5.mod (nostruct-align/1fht.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1fht/nostruct-align/1fht.t2k-w0.5.mod . Average NLL-Simple NULL score: -22.486698 /projects/compbio/experiments/models.97/pdb/1n/1nsyA/nostruct-align/1nsyA.t2k-w0.5.mod(21): Reading nostruct-align/1nsyA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc82-17965/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1n/1nsyA/nostruct-align/1nsyA.t2k-w0.5.mod (nostruct-align/1nsyA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1n/1nsyA/nostruct-align/1nsyA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.781670 /projects/compbio/experiments/models.97/pdb/4t/4tsvA/nostruct-align/4tsvA.t2k-w0.5.mod(21): Reading nostruct-align/4tsvA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc05-1487/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/4t/4tsvA/nostruct-align/4tsvA.t2k-w0.5.mod (nostruct-align/4tsvA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/4t/4tsvA/nostruct-align/4tsvA.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.442690 /projects/compbio/experiments/models.97/pdb/1e/1e0aB/nostruct-align/1e0aB.t2k-w0.5.mod(21): Reading nostruct-align/1e0aB.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc15-1704/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1e0aB/nostruct-align/1e0aB.t2k-w0.5.mod (nostruct-align/1e0aB.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1e0aB/nostruct-align/1e0aB.t2k-w0.5.mod . Average NLL-Simple NULL score: -16.024672 /projects/compbio/experiments/models.97/pdb/1m/1mrp/nostruct-align/1mrp.t2k-w0.5.mod(22): Reading nostruct-align/1mrp.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc11-2753/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1m/1mrp/nostruct-align/1mrp.t2k-w0.5.mod (nostruct-align/1mrp.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1m/1mrp/nostruct-align/1mrp.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.562683 /projects/compbio/experiments/models.97/pdb/1m/1mrt/nostruct-align/1mrt.t2k-w0.5.mod(21): Reading nostruct-align/1mrt.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc02-14386/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1m/1mrt/nostruct-align/1mrt.t2k-w0.5.mod (nostruct-align/1mrt.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1m/1mrt/nostruct-align/1mrt.t2k-w0.5.mod . Average NLL-Simple NULL score: -15.179698 /projects/compbio/experiments/models.97/pdb/1i/1iiwA/nostruct-align/1iiwA.t2k-w0.5.mod(22): Reading nostruct-align/1iiwA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc45-20035/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1i/1iiwA/nostruct-align/1iiwA.t2k-w0.5.mod (nostruct-align/1iiwA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1i/1iiwA/nostruct-align/1iiwA.t2k-w0.5.mod . Average NLL-Simple NULL score: -22.816681 /projects/compbio/experiments/models.97/pdb/4b/4bcl/nostruct-align/4bcl.t2k-w0.5.mod(22): Reading nostruct-align/4bcl.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc61-14376/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/4b/4bcl/nostruct-align/4bcl.t2k-w0.5.mod (nostruct-align/4bcl.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/4b/4bcl/nostruct-align/4bcl.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.353689 /projects/compbio/experiments/models.97/pdb/7a/7atjA/nostruct-align/7atjA.t2k-w0.5.mod(21): Reading nostruct-align/7atjA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc46-9733/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/7a/7atjA/nostruct-align/7atjA.t2k-w0.5.mod (nostruct-align/7atjA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/7a/7atjA/nostruct-align/7atjA.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.402693 /projects/compbio/experiments/models.97/pdb/1f/1fib/nostruct-align/1fib.t2k-w0.5.mod(21): Reading nostruct-align/1fib.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc65-20419/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1fib/nostruct-align/1fib.t2k-w0.5.mod (nostruct-align/1fib.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1fib/nostruct-align/1fib.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.623686 /projects/compbio/experiments/models.97/pdb/1h/1hv9A/nostruct-align/1hv9A.t2k-w0.5.mod(21): Reading nostruct-align/1hv9A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc14-29566/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1h/1hv9A/nostruct-align/1hv9A.t2k-w0.5.mod (nostruct-align/1hv9A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1h/1hv9A/nostruct-align/1hv9A.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.863676 /projects/compbio/experiments/models.97/pdb/1g/1gd7A/nostruct-align/1gd7A.t2k-w0.5.mod(21): Reading nostruct-align/1gd7A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc26-21679/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1g/1gd7A/nostruct-align/1gd7A.t2k-w0.5.mod (nostruct-align/1gd7A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1g/1gd7A/nostruct-align/1gd7A.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.902678 /projects/compbio/experiments/models.97/pdb/1e/1es5A/nostruct-align/1es5A.t2k-w0.5.mod(22): Reading nostruct-align/1es5A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc38-13668/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1es5A/nostruct-align/1es5A.t2k-w0.5.mod (nostruct-align/1es5A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1es5A/nostruct-align/1es5A.t2k-w0.5.mod . Average NLL-Simple NULL score: -22.043671 /projects/compbio/experiments/models.97/pdb/2h/2hddA/nostruct-align/2hddA.t2k-w0.5.mod(22): Reading nostruct-align/2hddA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc41-15030/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/2h/2hddA/nostruct-align/2hddA.t2k-w0.5.mod (nostruct-align/2hddA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/2h/2hddA/nostruct-align/2hddA.t2k-w0.5.mod . Average NLL-Simple NULL score: -16.793694 /projects/compbio/experiments/models.97/pdb/1q/1qq2A/nostruct-align/1qq2A.t2k-w0.5.mod(21): Reading nostruct-align/1qq2A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc22-4166/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1q/1qq2A/nostruct-align/1qq2A.t2k-w0.5.mod (nostruct-align/1qq2A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1q/1qq2A/nostruct-align/1qq2A.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.864683 /projects/compbio/experiments/models.97/pdb/1m/1msc/nostruct-align/1msc.t2k-w0.5.mod(22): Reading nostruct-align/1msc.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc38-11624/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1m/1msc/nostruct-align/1msc.t2k-w0.5.mod (nostruct-align/1msc.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1m/1msc/nostruct-align/1msc.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.308697 /projects/compbio/experiments/models.97/pdb/1f/1fil/nostruct-align/1fil.t2k-w0.5.mod(21): Reading nostruct-align/1fil.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc84-17175/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1fil/nostruct-align/1fil.t2k-w0.5.mod (nostruct-align/1fil.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1fil/nostruct-align/1fil.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.020681 /projects/compbio/experiments/models.97/pdb/1k/1kilD/nostruct-align/1kilD.t2k-w0.5.mod(22): Reading nostruct-align/1kilD.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc43-23154/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1k/1kilD/nostruct-align/1kilD.t2k-w0.5.mod (nostruct-align/1kilD.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1k/1kilD/nostruct-align/1kilD.t2k-w0.5.mod . Average NLL-Simple NULL score: -16.845675 /projects/compbio/experiments/models.97/pdb/1m/1msi/nostruct-align/1msi.t2k-w0.5.mod(21): Reading nostruct-align/1msi.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc21-16014/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1m/1msi/nostruct-align/1msi.t2k-w0.5.mod (nostruct-align/1msi.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1m/1msi/nostruct-align/1msi.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.337700 /projects/compbio/experiments/models.97/pdb/1k/1kilE/nostruct-align/1kilE.t2k-w0.5.mod(22): Reading nostruct-align/1kilE.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc51-3488/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1k/1kilE/nostruct-align/1kilE.t2k-w0.5.mod (nostruct-align/1kilE.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1k/1kilE/nostruct-align/1kilE.t2k-w0.5.mod . Average NLL-Simple NULL score: -16.096697 /projects/compbio/experiments/models.97/pdb/1a/1ae9A/nostruct-align/1ae9A.t2k-w0.5.mod(22): Reading nostruct-align/1ae9A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc41-25376/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1a/1ae9A/nostruct-align/1ae9A.t2k-w0.5.mod (nostruct-align/1ae9A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1a/1ae9A/nostruct-align/1ae9A.t2k-w0.5.mod . Average NLL-Simple NULL score: -23.269691 /projects/compbio/experiments/models.97/pdb/1m/1msk/nostruct-align/1msk.t2k-w0.5.mod(22): Reading nostruct-align/1msk.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc47-12863/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1m/1msk/nostruct-align/1msk.t2k-w0.5.mod (nostruct-align/1msk.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1m/1msk/nostruct-align/1msk.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.600687 /projects/compbio/experiments/models.97/pdb/1f/1fit/nostruct-align/1fit.t2k-w0.5.mod(22): Reading nostruct-align/1fit.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc63-27565/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1fit/nostruct-align/1fit.t2k-w0.5.mod (nostruct-align/1fit.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1fit/nostruct-align/1fit.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.516693 /projects/compbio/experiments/models.97/pdb/1l/1l2pA/nostruct-align/1l2pA.t2k-w0.5.mod(22): Reading nostruct-align/1l2pA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc45-15854/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1l/1l2pA/nostruct-align/1l2pA.t2k-w0.5.mod (nostruct-align/1l2pA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1l/1l2pA/nostruct-align/1l2pA.t2k-w0.5.mod . Average NLL-Simple NULL score: -16.875673 /projects/compbio/experiments/models.97/pdb/1c/1cl7I/nostruct-align/1cl7I.t2k-w0.5.mod(22): Reading nostruct-align/1cl7I.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc59-566/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1c/1cl7I/nostruct-align/1cl7I.t2k-w0.5.mod (nostruct-align/1cl7I.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1c/1cl7I/nostruct-align/1cl7I.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.720682 /projects/compbio/experiments/models.97/pdb/1e/1e0bA/nostruct-align/1e0bA.t2k-w0.5.mod(22): Reading nostruct-align/1e0bA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc64-1898/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1e0bA/nostruct-align/1e0bA.t2k-w0.5.mod (nostruct-align/1e0bA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1e0bA/nostruct-align/1e0bA.t2k-w0.5.mod . Average NLL-Simple NULL score: -16.906685 /projects/compbio/experiments/models.97/pdb/1f/1fiy/nostruct-align/1fiy.t2k-w0.5.mod(22): Reading nostruct-align/1fiy.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc61-14842/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1fiy/nostruct-align/1fiy.t2k-w0.5.mod (nostruct-align/1fiy.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1fiy/nostruct-align/1fiy.t2k-w0.5.mod . Average NLL-Simple NULL score: -24.350676 /projects/compbio/experiments/models.97/pdb/2w/2wsyA/nostruct-align/2wsyA.t2k-w0.5.mod(21): Reading nostruct-align/2wsyA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc89-27950/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/2w/2wsyA/nostruct-align/2wsyA.t2k-w0.5.mod (nostruct-align/2wsyA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/2w/2wsyA/nostruct-align/2wsyA.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.851683 /projects/compbio/experiments/models.97/pdb/2w/2wsyB/nostruct-align/2wsyB.t2k-w0.5.mod(21): Reading nostruct-align/2wsyB.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc82-19599/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/2w/2wsyB/nostruct-align/2wsyB.t2k-w0.5.mod (nostruct-align/2wsyB.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/2w/2wsyB/nostruct-align/2wsyB.t2k-w0.5.mod . Average NLL-Simple NULL score: -22.283693 /projects/compbio/experiments/models.97/pdb/1i/1ik6A/nostruct-align/1ik6A.t2k-w0.5.mod(22): Reading nostruct-align/1ik6A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc59-23152/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1i/1ik6A/nostruct-align/1ik6A.t2k-w0.5.mod (nostruct-align/1ik6A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1i/1ik6A/nostruct-align/1ik6A.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.290670 /projects/compbio/experiments/models.97/pdb/1e/1e7lA/nostruct-align/1e7lA.t2k-w0.5.mod(22): Reading nostruct-align/1e7lA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc19-11524/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1e7lA/nostruct-align/1e7lA.t2k-w0.5.mod (nostruct-align/1e7lA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1e7lA/nostruct-align/1e7lA.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.857677 /projects/compbio/experiments/models.97/pdb/1q/1qhkA/nostruct-align/1qhkA.t2k-w0.5.mod(21): Reading nostruct-align/1qhkA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc55-15948/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1q/1qhkA/nostruct-align/1qhkA.t2k-w0.5.mod (nostruct-align/1qhkA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1q/1qhkA/nostruct-align/1qhkA.t2k-w0.5.mod . Average NLL-Simple NULL score: -16.451677 /projects/compbio/experiments/models.97/pdb/1d/1dw0A/nostruct-align/1dw0A.t2k-w0.5.mod(22): Reading nostruct-align/1dw0A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc20-7498/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1d/1dw0A/nostruct-align/1dw0A.t2k-w0.5.mod (nostruct-align/1dw0A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1d/1dw0A/nostruct-align/1dw0A.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.607697 /projects/compbio/experiments/models.97/pdb/1f/1fftC/nostruct-align/1fftC.t2k-w0.5.mod(21): Reading nostruct-align/1fftC.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc23-27285/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1fftC/nostruct-align/1fftC.t2k-w0.5.mod (nostruct-align/1fftC.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1fftC/nostruct-align/1fftC.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.823689 /projects/compbio/experiments/models.97/pdb/1f/1f3rB/nostruct-align/1f3rB.t2k-w0.5.mod(21): Reading nostruct-align/1f3rB.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc06-14405/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1f3rB/nostruct-align/1f3rB.t2k-w0.5.mod (nostruct-align/1f3rB.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1f3rB/nostruct-align/1f3rB.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.002697 /projects/compbio/experiments/models.97/pdb/1g/1gd8A/nostruct-align/1gd8A.t2k-w0.5.mod(22): Reading nostruct-align/1gd8A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc55-14111/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1g/1gd8A/nostruct-align/1gd8A.t2k-w0.5.mod (nostruct-align/1gd8A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1g/1gd8A/nostruct-align/1gd8A.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.837694 /projects/compbio/experiments/models.97/pdb/1c/1c0nA/nostruct-align/1c0nA.t2k-w0.5.mod(21): Reading nostruct-align/1c0nA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc74-8038/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1c/1c0nA/nostruct-align/1c0nA.t2k-w0.5.mod (nostruct-align/1c0nA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1c/1c0nA/nostruct-align/1c0nA.t2k-w0.5.mod . Average NLL-Simple NULL score: -22.347691 /projects/compbio/experiments/models.97/pdb/1e/1es6A/nostruct-align/1es6A.t2k-w0.5.mod(21): Reading nostruct-align/1es6A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc63-27641/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1es6A/nostruct-align/1es6A.t2k-w0.5.mod (nostruct-align/1es6A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1es6A/nostruct-align/1es6A.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.909681 /projects/compbio/experiments/models.97/pdb/1i/1iqaA/nostruct-align/1iqaA.t2k-w0.5.mod(22): Reading nostruct-align/1iqaA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc49-5876/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1i/1iqaA/nostruct-align/1iqaA.t2k-w0.5.mod (nostruct-align/1iqaA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1i/1iqaA/nostruct-align/1iqaA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.182686 /projects/compbio/experiments/models.97/pdb/1q/1qouA/nostruct-align/1qouA.t2k-w0.5.mod(21): Reading nostruct-align/1qouA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc45-12233/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1q/1qouA/nostruct-align/1qouA.t2k-w0.5.mod (nostruct-align/1qouA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1q/1qouA/nostruct-align/1qouA.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.814686 /projects/compbio/experiments/models.97/pdb/1c/1cl8A/nostruct-align/1cl8A.t2k-w0.5.mod(22): Reading nostruct-align/1cl8A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc64-31863/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1c/1cl8A/nostruct-align/1cl8A.t2k-w0.5.mod (nostruct-align/1cl8A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1c/1cl8A/nostruct-align/1cl8A.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.150696 /projects/compbio/experiments/models.97/pdb/1c/1c96A/nostruct-align/1c96A.t2k-w0.5.mod(22): Reading nostruct-align/1c96A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc43-8404/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1c/1c96A/nostruct-align/1c96A.t2k-w0.5.mod (nostruct-align/1c96A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1c/1c96A/nostruct-align/1c96A.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.861683 /projects/compbio/experiments/models.97/pdb/1k/1kimA/nostruct-align/1kimA.t2k-w0.5.mod(21): Reading nostruct-align/1kimA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc66-885/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1k/1kimA/nostruct-align/1kimA.t2k-w0.5.mod (nostruct-align/1kimA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1k/1kimA/nostruct-align/1kimA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.327698 /projects/compbio/experiments/models.97/pdb/1g/1g7aA/nostruct-align/1g7aA.t2k-w0.5.mod(22): Reading nostruct-align/1g7aA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc71-24308/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1g/1g7aA/nostruct-align/1g7aA.t2k-w0.5.mod (nostruct-align/1g7aA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1g/1g7aA/nostruct-align/1g7aA.t2k-w0.5.mod . Average NLL-Simple NULL score: -14.465670 /projects/compbio/experiments/models.97/pdb/1g/1g7aB/nostruct-align/1g7aB.t2k-w0.5.mod(22): Reading nostruct-align/1g7aB.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc45-6594/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1g/1g7aB/nostruct-align/1g7aB.t2k-w0.5.mod (nostruct-align/1g7aB.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1g/1g7aB/nostruct-align/1g7aB.t2k-w0.5.mod . Average NLL-Simple NULL score: -15.304681 /projects/compbio/experiments/models.97/pdb/1w/1wgjA/nostruct-align/1wgjA.t2k-w0.5.mod(21): Reading nostruct-align/1wgjA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc28-22877/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1w/1wgjA/nostruct-align/1wgjA.t2k-w0.5.mod (nostruct-align/1wgjA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1w/1wgjA/nostruct-align/1wgjA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.016695 /projects/compbio/experiments/models.97/pdb/1e/1eceA/nostruct-align/1eceA.t2k-w0.5.mod(21): Reading nostruct-align/1eceA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc75-30169/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1eceA/nostruct-align/1eceA.t2k-w0.5.mod (nostruct-align/1eceA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1eceA/nostruct-align/1eceA.t2k-w0.5.mod . Average NLL-Simple NULL score: -23.030693 /projects/compbio/experiments/models.97/pdb/1a/1a28A/nostruct-align/1a28A.t2k-w0.5.mod(21): Reading nostruct-align/1a28A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc33-23521/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1a/1a28A/nostruct-align/1a28A.t2k-w0.5.mod (nostruct-align/1a28A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1a/1a28A/nostruct-align/1a28A.t2k-w0.5.mod . Average NLL-Simple NULL score: -22.047686 /projects/compbio/experiments/models.97/pdb/1l/1l2qA/nostruct-align/1l2qA.t2k-w0.5.mod(22): Reading nostruct-align/1l2qA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc43-9460/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1l/1l2qA/nostruct-align/1l2qA.t2k-w0.5.mod (nostruct-align/1l2qA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1l/1l2qA/nostruct-align/1l2qA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.798695 /projects/compbio/experiments/models.97/pdb/1e/1e0cA/nostruct-align/1e0cA.t2k-w0.5.mod(22): Reading nostruct-align/1e0cA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc21-398/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1e0cA/nostruct-align/1e0cA.t2k-w0.5.mod (nostruct-align/1e0cA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1e0cA/nostruct-align/1e0cA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.219685 /projects/compbio/experiments/models.97/pdb/1t/1t1dA/nostruct-align/1t1dA.t2k-w0.5.mod(22): Reading nostruct-align/1t1dA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc58-8148/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1t/1t1dA/nostruct-align/1t1dA.t2k-w0.5.mod (nostruct-align/1t1dA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1t/1t1dA/nostruct-align/1t1dA.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.102671 /projects/compbio/experiments/models.97/pdb/1k/1kr5A/nostruct-align/1kr5A.t2k-w0.5.mod(22): Reading nostruct-align/1kr5A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc68-4192/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1k/1kr5A/nostruct-align/1kr5A.t2k-w0.5.mod (nostruct-align/1kr5A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1k/1kr5A/nostruct-align/1kr5A.t2k-w0.5.mod . Average NLL-Simple NULL score: -22.466684 /projects/compbio/experiments/models.97/pdb/1h/1ho1A/nostruct-align/1ho1A.t2k-w0.5.mod(22): Reading nostruct-align/1ho1A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc43-13033/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1h/1ho1A/nostruct-align/1ho1A.t2k-w0.5.mod (nostruct-align/1ho1A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1h/1ho1A/nostruct-align/1ho1A.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.744698 /projects/compbio/experiments/models.97/pdb/1a/1akeA/nostruct-align/1akeA.t2k-w0.5.mod(21): Reading nostruct-align/1akeA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc06-12497/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1a/1akeA/nostruct-align/1akeA.t2k-w0.5.mod (nostruct-align/1akeA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1a/1akeA/nostruct-align/1akeA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.862673 /projects/compbio/experiments/models.97/pdb/1p/1plfA/nostruct-align/1plfA.t2k-w0.5.mod(21): Reading nostruct-align/1plfA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc13-24098/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1p/1plfA/nostruct-align/1plfA.t2k-w0.5.mod (nostruct-align/1plfA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1p/1plfA/nostruct-align/1plfA.t2k-w0.5.mod . Average NLL-Simple NULL score: -16.822691 /projects/compbio/experiments/models.97/pdb/1i/1i85A/nostruct-align/1i85A.t2k-w0.5.mod(21): Reading nostruct-align/1i85A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc04-15317/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1i/1i85A/nostruct-align/1i85A.t2k-w0.5.mod (nostruct-align/1i85A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1i/1i85A/nostruct-align/1i85A.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.282694 /projects/compbio/experiments/models.97/pdb/1i/1i6wA/nostruct-align/1i6wA.t2k-w0.5.mod(22): Reading nostruct-align/1i6wA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc32-21283/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1i/1i6wA/nostruct-align/1i6wA.t2k-w0.5.mod (nostruct-align/1i6wA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1i/1i6wA/nostruct-align/1i6wA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.589672 /projects/compbio/experiments/models.97/pdb/1q/1qhlA/nostruct-align/1qhlA.t2k-w0.5.mod(22): Reading nostruct-align/1qhlA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc86-8888/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1q/1qhlA/nostruct-align/1qhlA.t2k-w0.5.mod (nostruct-align/1qhlA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1q/1qhlA/nostruct-align/1qhlA.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.268677 /projects/compbio/experiments/models.97/pdb/1m/1mtx/nostruct-align/1mtx.t2k-w0.5.mod(21): Reading nostruct-align/1mtx.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc68-29479/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1m/1mtx/nostruct-align/1mtx.t2k-w0.5.mod (nostruct-align/1mtx.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1m/1mtx/nostruct-align/1mtx.t2k-w0.5.mod . Average NLL-Simple NULL score: -15.425698 /projects/compbio/experiments/models.97/pdb/1d/1dusA/nostruct-align/1dusA.t2k-w0.5.mod(22): Reading nostruct-align/1dusA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc29-26342/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1d/1dusA/nostruct-align/1dusA.t2k-w0.5.mod (nostruct-align/1dusA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1d/1dusA/nostruct-align/1dusA.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.320671 /projects/compbio/experiments/models.97/pdb/1f/1fkd/nostruct-align/1fkd.t2k-w0.5.mod(21): Reading nostruct-align/1fkd.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc05-23366/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1fkd/nostruct-align/1fkd.t2k-w0.5.mod (nostruct-align/1fkd.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1fkd/nostruct-align/1fkd.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.622683 /projects/compbio/experiments/models.97/pdb/1f/1fkf/nostruct-align/1fkf.t2k-w0.5.mod(21): Reading nostruct-align/1fkf.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc82-16489/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1fkf/nostruct-align/1fkf.t2k-w0.5.mod (nostruct-align/1fkf.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1fkf/nostruct-align/1fkf.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.622683 /projects/compbio/experiments/models.97/pdb/1e/1es7B/nostruct-align/1es7B.t2k-w0.5.mod(22): Reading nostruct-align/1es7B.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc62-27952/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1es7B/nostruct-align/1es7B.t2k-w0.5.mod (nostruct-align/1es7B.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1es7B/nostruct-align/1es7B.t2k-w0.5.mod . Average NLL-Simple NULL score: -16.603693 /projects/compbio/experiments/models.97/pdb/1i/1iqbB/nostruct-align/1iqbB.t2k-w0.5.mod(22): Reading nostruct-align/1iqbB.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc44-2826/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1i/1iqbB/nostruct-align/1iqbB.t2k-w0.5.mod (nostruct-align/1iqbB.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1i/1iqbB/nostruct-align/1iqbB.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.891684 /projects/compbio/experiments/models.97/pdb/1b/1bp3A/nostruct-align/1bp3A.t2k-w0.5.mod(21): Reading nostruct-align/1bp3A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc03-5641/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1b/1bp3A/nostruct-align/1bp3A.t2k-w0.5.mod (nostruct-align/1bp3A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1b/1bp3A/nostruct-align/1bp3A.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.257698 /projects/compbio/experiments/models.97/pdb/1b/1bp3B/nostruct-align/1bp3B.t2k-w0.5.mod(21): Reading nostruct-align/1bp3B.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc22-24967/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1b/1bp3B/nostruct-align/1bp3B.t2k-w0.5.mod (nostruct-align/1bp3B.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1b/1bp3B/nostruct-align/1bp3B.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.791683 /projects/compbio/experiments/models.97/pdb/1q/1qq4A/nostruct-align/1qq4A.t2k-w0.5.mod(21): Reading nostruct-align/1qq4A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc62-9747/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1q/1qq4A/nostruct-align/1qq4A.t2k-w0.5.mod (nostruct-align/1qq4A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1q/1qq4A/nostruct-align/1qq4A.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.134686 /projects/compbio/experiments/models.97/pdb/1f/1fkj/nostruct-align/1fkj.t2k-w0.5.mod(21): Reading nostruct-align/1fkj.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc54-2461/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1fkj/nostruct-align/1fkj.t2k-w0.5.mod (nostruct-align/1fkj.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1fkj/nostruct-align/1fkj.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.573696 /projects/compbio/experiments/models.97/pdb/1a/1ayyA/nostruct-align/1ayyA.t2k-w0.5.mod(21): Reading nostruct-align/1ayyA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc97-14589/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1a/1ayyA/nostruct-align/1ayyA.t2k-w0.5.mod (nostruct-align/1ayyA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1a/1ayyA/nostruct-align/1ayyA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.327686 /projects/compbio/experiments/models.97/pdb/1e/1eybA/nostruct-align/1eybA.t2k-w0.5.mod(22): Reading nostruct-align/1eybA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc50-622/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1eybA/nostruct-align/1eybA.t2k-w0.5.mod (nostruct-align/1eybA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1eybA/nostruct-align/1eybA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.419674 /projects/compbio/experiments/models.97/pdb/5e/5er2E/nostruct-align/5er2E.t2k-w0.5.mod(21): Reading nostruct-align/5er2E.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc43-463/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/5e/5er2E/nostruct-align/5er2E.t2k-w0.5.mod (nostruct-align/5er2E.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/5e/5er2E/nostruct-align/5er2E.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.102688 /projects/compbio/experiments/models.97/pdb/1q/1qovH/nostruct-align/1qovH.t2k-w0.5.mod(21): Reading nostruct-align/1qovH.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc31-12311/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1q/1qovH/nostruct-align/1qovH.t2k-w0.5.mod (nostruct-align/1qovH.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1q/1qovH/nostruct-align/1qovH.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.264673 /projects/compbio/experiments/models.97/pdb/1s/1shaA/nostruct-align/1shaA.t2k-w0.5.mod(21): Reading nostruct-align/1shaA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc24-4013/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1s/1shaA/nostruct-align/1shaA.t2k-w0.5.mod (nostruct-align/1shaA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1s/1shaA/nostruct-align/1shaA.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.336699 /projects/compbio/experiments/models.97/pdb/1a/1aroP/nostruct-align/1aroP.t2k-w0.5.mod(21): Reading nostruct-align/1aroP.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc42-9360/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1a/1aroP/nostruct-align/1aroP.t2k-w0.5.mod (nostruct-align/1aroP.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1a/1aroP/nostruct-align/1aroP.t2k-w0.5.mod . Average NLL-Simple NULL score: -23.816696 /projects/compbio/experiments/models.97/pdb/1l/1l2rA/nostruct-align/1l2rA.t2k-w0.5.mod(22): Reading nostruct-align/1l2rA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc42-13580/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1l/1l2rA/nostruct-align/1l2rA.t2k-w0.5.mod (nostruct-align/1l2rA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1l/1l2rA/nostruct-align/1l2rA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.798695 /projects/compbio/experiments/models.97/pdb/1e/1ecfA/nostruct-align/1ecfA.t2k-w0.5.mod(21): Reading nostruct-align/1ecfA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc41-17676/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1ecfA/nostruct-align/1ecfA.t2k-w0.5.mod (nostruct-align/1ecfA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1ecfA/nostruct-align/1ecfA.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.204676 /projects/compbio/experiments/models.97/pdb/3t/3tss/nostruct-align/3tss.t2k-w0.5.mod(21): Reading nostruct-align/3tss.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc99-26435/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/3t/3tss/nostruct-align/3tss.t2k-w0.5.mod (nostruct-align/3tss.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/3t/3tss/nostruct-align/3tss.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.298672 /projects/compbio/experiments/models.97/pdb/1e/1ecfB/nostruct-align/1ecfB.t2k-w0.5.mod(21): Reading nostruct-align/1ecfB.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc49-3323/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1ecfB/nostruct-align/1ecfB.t2k-w0.5.mod (nostruct-align/1ecfB.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1ecfB/nostruct-align/1ecfB.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.356682 /projects/compbio/experiments/models.97/pdb/1m/1mun/nostruct-align/1mun.t2k-w0.5.mod(22): Reading nostruct-align/1mun.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc86-8661/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1m/1mun/nostruct-align/1mun.t2k-w0.5.mod (nostruct-align/1mun.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1m/1mun/nostruct-align/1mun.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.190699 /projects/compbio/experiments/models.97/pdb/1o/1opaA/nostruct-align/1opaA.t2k-w0.5.mod(21): Reading nostruct-align/1opaA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc68-29804/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1o/1opaA/nostruct-align/1opaA.t2k-w0.5.mod (nostruct-align/1opaA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1o/1opaA/nostruct-align/1opaA.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.010691 /projects/compbio/experiments/models.97/pdb/1m/1mup/nostruct-align/1mup.t2k-w0.5.mod(21): Reading nostruct-align/1mup.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc20-25317/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1m/1mup/nostruct-align/1mup.t2k-w0.5.mod (nostruct-align/1mup.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1m/1mup/nostruct-align/1mup.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.476690 /projects/compbio/experiments/models.97/pdb/1m/1mut/nostruct-align/1mut.t2k-w0.5.mod(21): Reading nostruct-align/1mut.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc37-11747/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1m/1mut/nostruct-align/1mut.t2k-w0.5.mod (nostruct-align/1mut.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1m/1mut/nostruct-align/1mut.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.219673 /projects/compbio/experiments/models.97/pdb/1i/1i86A/nostruct-align/1i86A.t2k-w0.5.mod(22): Reading nostruct-align/1i86A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc86-9883/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1i/1i86A/nostruct-align/1i86A.t2k-w0.5.mod (nostruct-align/1i86A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1i/1i86A/nostruct-align/1i86A.t2k-w0.5.mod . Average NLL-Simple NULL score: -22.572676 /projects/compbio/experiments/models.97/pdb/1b/1bglA/nostruct-align/1bglA.t2k-w0.5.mod(21): Reading nostruct-align/1bglA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc24-28087/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1b/1bglA/nostruct-align/1bglA.t2k-w0.5.mod (nostruct-align/1bglA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1b/1bglA/nostruct-align/1bglA.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.556694 /projects/compbio/experiments/models.97/pdb/1f/1f52A/nostruct-align/1f52A.t2k-w0.5.mod(22): Reading nostruct-align/1f52A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc35-13924/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1f52A/nostruct-align/1f52A.t2k-w0.5.mod (nostruct-align/1f52A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1f52A/nostruct-align/1f52A.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.523691 /projects/compbio/experiments/models.97/pdb/1c/1ce0A/nostruct-align/1ce0A.t2k-w0.5.mod(22): Reading nostruct-align/1ce0A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc62-3449/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1c/1ce0A/nostruct-align/1ce0A.t2k-w0.5.mod (nostruct-align/1ce0A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1c/1ce0A/nostruct-align/1ce0A.t2k-w0.5.mod . Average NLL-Simple NULL score: -16.453682 /projects/compbio/experiments/models.97/pdb/1c/1c0pA/nostruct-align/1c0pA.t2k-w0.5.mod(22): Reading nostruct-align/1c0pA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc55-10896/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1c/1c0pA/nostruct-align/1c0pA.t2k-w0.5.mod (nostruct-align/1c0pA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1c/1c0pA/nostruct-align/1c0pA.t2k-w0.5.mod . Average NLL-Simple NULL score: -22.402689 /projects/compbio/experiments/models.97/pdb/1k/1kbeA/nostruct-align/1kbeA.t2k-w0.5.mod(22): Reading nostruct-align/1kbeA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc58-1055/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1k/1kbeA/nostruct-align/1kbeA.t2k-w0.5.mod (nostruct-align/1kbeA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1k/1kbeA/nostruct-align/1kbeA.t2k-w0.5.mod . Average NLL-Simple NULL score: -15.546697 /projects/compbio/experiments/models.97/pdb/1i/1iqcA/nostruct-align/1iqcA.t2k-w0.5.mod(22): Reading nostruct-align/1iqcA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc75-19652/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1i/1iqcA/nostruct-align/1iqcA.t2k-w0.5.mod (nostruct-align/1iqcA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1i/1iqcA/nostruct-align/1iqcA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.070700 /projects/compbio/experiments/models.97/pdb/1q/1qq5A/nostruct-align/1qq5A.t2k-w0.5.mod(22): Reading nostruct-align/1qq5A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc45-7682/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1q/1qq5A/nostruct-align/1qq5A.t2k-w0.5.mod (nostruct-align/1qq5A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1q/1qq5A/nostruct-align/1qq5A.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.839678 /projects/compbio/experiments/models.97/pdb/1f/1flp/nostruct-align/1flp.t2k-w0.5.mod(21): Reading nostruct-align/1flp.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc38-10576/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1flp/nostruct-align/1flp.t2k-w0.5.mod (nostruct-align/1flp.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1flp/nostruct-align/1flp.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.670671 /projects/compbio/experiments/models.97/pdb/1d/1dgaA/nostruct-align/1dgaA.t2k-w0.5.mod(21): Reading nostruct-align/1dgaA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc22-26028/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1d/1dgaA/nostruct-align/1dgaA.t2k-w0.5.mod (nostruct-align/1dgaA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1d/1dgaA/nostruct-align/1dgaA.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.592695 /projects/compbio/experiments/models.97/pdb/1i/1ixmA/nostruct-align/1ixmA.t2k-w0.5.mod(22): Reading nostruct-align/1ixmA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc43-23724/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1i/1ixmA/nostruct-align/1ixmA.t2k-w0.5.mod (nostruct-align/1ixmA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1i/1ixmA/nostruct-align/1ixmA.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.630684 /projects/compbio/experiments/models.97/pdb/1s/1shbA/nostruct-align/1shbA.t2k-w0.5.mod(21): Reading nostruct-align/1shbA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc65-21426/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1s/1shbA/nostruct-align/1shbA.t2k-w0.5.mod (nostruct-align/1shbA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1s/1shbA/nostruct-align/1shbA.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.334684 /projects/compbio/experiments/models.97/pdb/1m/1mvi/nostruct-align/1mvi.t2k-w0.5.mod(21): Reading nostruct-align/1mvi.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc55-16304/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1m/1mvi/nostruct-align/1mvi.t2k-w0.5.mod (nostruct-align/1mvi.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1m/1mvi/nostruct-align/1mvi.t2k-w0.5.mod . Average NLL-Simple NULL score: -15.003692 /projects/compbio/experiments/models.97/pdb/1i/1ixmB/nostruct-align/1ixmB.t2k-w0.5.mod(21): Reading nostruct-align/1ixmB.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc32-22408/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1i/1ixmB/nostruct-align/1ixmB.t2k-w0.5.mod (nostruct-align/1ixmB.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1i/1ixmB/nostruct-align/1ixmB.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.679691 /projects/compbio/experiments/models.97/pdb/1m/1mvj/nostruct-align/1mvj.t2k-w0.5.mod(21): Reading nostruct-align/1mvj.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc10-30373/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1m/1mvj/nostruct-align/1mvj.t2k-w0.5.mod (nostruct-align/1mvj.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1m/1mvj/nostruct-align/1mvj.t2k-w0.5.mod . Average NLL-Simple NULL score: -15.127698 /projects/compbio/experiments/models.97/pdb/1f/1fuiA/nostruct-align/1fuiA.t2k-w0.5.mod(21): Reading nostruct-align/1fuiA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc39-32007/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1fuiA/nostruct-align/1fuiA.t2k-w0.5.mod (nostruct-align/1fuiA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1fuiA/nostruct-align/1fuiA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.693687 /projects/compbio/experiments/models.97/pdb/1k/1kr7A/nostruct-align/1kr7A.t2k-w0.5.mod(22): Reading nostruct-align/1kr7A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc55-26753/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1k/1kr7A/nostruct-align/1kr7A.t2k-w0.5.mod (nostruct-align/1kr7A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1k/1kr7A/nostruct-align/1kr7A.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.130699 /projects/compbio/experiments/models.97/pdb/1q/1qadA/nostruct-align/1qadA.t2k-w0.5.mod(22): Reading nostruct-align/1qadA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc68-2148/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1q/1qadA/nostruct-align/1qadA.t2k-w0.5.mod (nostruct-align/1qadA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1q/1qadA/nostruct-align/1qadA.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.203684 /projects/compbio/experiments/models.97/pdb/1o/1opbA/nostruct-align/1opbA.t2k-w0.5.mod(21): Reading nostruct-align/1opbA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc65-20642/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1o/1opbA/nostruct-align/1opbA.t2k-w0.5.mod (nostruct-align/1opbA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1o/1opbA/nostruct-align/1opbA.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.021673 /projects/compbio/experiments/models.97/pdb/2b/2brz/nostruct-align/2brz.t2k-w0.5.mod(22): Reading nostruct-align/2brz.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc55-32751/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/2b/2brz/nostruct-align/2brz.t2k-w0.5.mod (nostruct-align/2brz.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/2b/2brz/nostruct-align/2brz.t2k-w0.5.mod . Average NLL-Simple NULL score: -16.556696 /projects/compbio/experiments/models.97/pdb/1i/1ik9A/nostruct-align/1ik9A.t2k-w0.5.mod(22): Reading nostruct-align/1ik9A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc20-5996/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1i/1ik9A/nostruct-align/1ik9A.t2k-w0.5.mod (nostruct-align/1ik9A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1i/1ik9A/nostruct-align/1ik9A.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.444679 /projects/compbio/experiments/models.97/pdb/2b/2blsA/nostruct-align/2blsA.t2k-w0.5.mod(21): Reading nostruct-align/2blsA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc20-20350/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/2b/2blsA/nostruct-align/2blsA.t2k-w0.5.mod (nostruct-align/2blsA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/2b/2blsA/nostruct-align/2blsA.t2k-w0.5.mod . Average NLL-Simple NULL score: -22.555679 /projects/compbio/experiments/models.97/pdb/1i/1ik9C/nostruct-align/1ik9C.t2k-w0.5.mod(22): Reading nostruct-align/1ik9C.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc28-7034/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1i/1ik9C/nostruct-align/1ik9C.t2k-w0.5.mod (nostruct-align/1ik9C.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1i/1ik9C/nostruct-align/1ik9C.t2k-w0.5.mod . Average NLL-Simple NULL score: -15.394677 /projects/compbio/experiments/models.97/pdb/1b/1b4kA/nostruct-align/1b4kA.t2k-w0.5.mod(21): Reading nostruct-align/1b4kA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc77-24920/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1b/1b4kA/nostruct-align/1b4kA.t2k-w0.5.mod (nostruct-align/1b4kA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1b/1b4kA/nostruct-align/1b4kA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.526680 /projects/compbio/experiments/models.97/pdb/1f/1fmb/nostruct-align/1fmb.t2k-w0.5.mod(21): Reading nostruct-align/1fmb.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc23-6145/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1fmb/nostruct-align/1fmb.t2k-w0.5.mod (nostruct-align/1fmb.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1fmb/nostruct-align/1fmb.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.301672 /projects/compbio/experiments/models.97/pdb/1f/1f53A/nostruct-align/1f53A.t2k-w0.5.mod(21): Reading nostruct-align/1f53A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc51-813/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1f53A/nostruct-align/1f53A.t2k-w0.5.mod (nostruct-align/1f53A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1f53A/nostruct-align/1f53A.t2k-w0.5.mod . Average NLL-Simple NULL score: -16.992685 /projects/compbio/experiments/models.97/pdb/1f/1f3uA/nostruct-align/1f3uA.t2k-w0.5.mod(22): Reading nostruct-align/1f3uA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc86-7551/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1f3uA/nostruct-align/1f3uA.t2k-w0.5.mod (nostruct-align/1f3uA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1f3uA/nostruct-align/1f3uA.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.928682 /projects/compbio/experiments/models.97/pdb/1f/1f3uB/nostruct-align/1f3uB.t2k-w0.5.mod(22): Reading nostruct-align/1f3uB.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc43-9213/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1f3uB/nostruct-align/1f3uB.t2k-w0.5.mod (nostruct-align/1f3uB.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1f3uB/nostruct-align/1f3uB.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.684679 /projects/compbio/experiments/models.97/pdb/1p/1psrA/nostruct-align/1psrA.t2k-w0.5.mod(22): Reading nostruct-align/1psrA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc50-13613/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1p/1psrA/nostruct-align/1psrA.t2k-w0.5.mod (nostruct-align/1psrA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1p/1psrA/nostruct-align/1psrA.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.161673 /projects/compbio/experiments/models.97/pdb/1e/1es9A/nostruct-align/1es9A.t2k-w0.5.mod(22): Reading nostruct-align/1es9A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc32-654/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1es9A/nostruct-align/1es9A.t2k-w0.5.mod (nostruct-align/1es9A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1es9A/nostruct-align/1es9A.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.288671 /projects/compbio/experiments/models.97/pdb/2h/2hdhA/nostruct-align/2hdhA.t2k-w0.5.mod(22): Reading nostruct-align/2hdhA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc54-6165/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/2h/2hdhA/nostruct-align/2hdhA.t2k-w0.5.mod (nostruct-align/2hdhA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/2h/2hdhA/nostruct-align/2hdhA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.796673 /projects/compbio/experiments/models.97/pdb/1f/1fmk/nostruct-align/1fmk.t2k-w0.5.mod(22): Reading nostruct-align/1fmk.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc77-2446/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1fmk/nostruct-align/1fmk.t2k-w0.5.mod (nostruct-align/1fmk.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1fmk/nostruct-align/1fmk.t2k-w0.5.mod . Average NLL-Simple NULL score: -22.946680 /projects/compbio/experiments/models.97/pdb/2u/2utgA/nostruct-align/2utgA.t2k-w0.5.mod(21): Reading nostruct-align/2utgA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc37-13325/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/2u/2utgA/nostruct-align/2utgA.t2k-w0.5.mod (nostruct-align/2utgA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/2u/2utgA/nostruct-align/2utgA.t2k-w0.5.mod . Average NLL-Simple NULL score: -16.951694 /projects/compbio/experiments/models.97/pdb/1g/1g7dA/nostruct-align/1g7dA.t2k-w0.5.mod(21): Reading nostruct-align/1g7dA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc36-15752/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1g/1g7dA/nostruct-align/1g7dA.t2k-w0.5.mod (nostruct-align/1g7dA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1g/1g7dA/nostruct-align/1g7dA.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.188673 /projects/compbio/experiments/models.97/pdb/1s/1shcA/nostruct-align/1shcA.t2k-w0.5.mod(21): Reading nostruct-align/1shcA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc25-19364/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1s/1shcA/nostruct-align/1shcA.t2k-w0.5.mod (nostruct-align/1shcA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1s/1shcA/nostruct-align/1shcA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.047674 /projects/compbio/experiments/models.97/pdb/1j/1jv2A/nostruct-align/1jv2A.t2k-w0.5.mod(21): Reading nostruct-align/1jv2A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc84-20894/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1j/1jv2A/nostruct-align/1jv2A.t2k-w0.5.mod (nostruct-align/1jv2A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1j/1jv2A/nostruct-align/1jv2A.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.525686 /projects/compbio/experiments/models.97/pdb/1j/1jv2B/nostruct-align/1jv2B.t2k-w0.5.mod(21): Reading nostruct-align/1jv2B.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc62-27603/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1j/1jv2B/nostruct-align/1jv2B.t2k-w0.5.mod (nostruct-align/1jv2B.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1j/1jv2B/nostruct-align/1jv2B.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.808699 /projects/compbio/experiments/models.97/pdb/1i/1id0A/nostruct-align/1id0A.t2k-w0.5.mod(22): Reading nostruct-align/1id0A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc43-13405/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1i/1id0A/nostruct-align/1id0A.t2k-w0.5.mod (nostruct-align/1id0A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1i/1id0A/nostruct-align/1id0A.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.968676 /projects/compbio/experiments/models.97/pdb/1g/1gqpA/nostruct-align/1gqpA.t2k-w0.5.mod(22): Reading nostruct-align/1gqpA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc74-18972/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1g/1gqpA/nostruct-align/1gqpA.t2k-w0.5.mod (nostruct-align/1gqpA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1g/1gqpA/nostruct-align/1gqpA.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.740685 /projects/compbio/experiments/models.97/pdb/1q/1qoxN/nostruct-align/1qoxN.t2k-w0.5.mod(21): Reading nostruct-align/1qoxN.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc84-31480/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1q/1qoxN/nostruct-align/1qoxN.t2k-w0.5.mod (nostruct-align/1qoxN.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1q/1qoxN/nostruct-align/1qoxN.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.897682 /projects/compbio/experiments/models.97/pdb/1i/1ibrB/nostruct-align/1ibrB.t2k-w0.5.mod(22): Reading nostruct-align/1ibrB.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc46-525/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1i/1ibrB/nostruct-align/1ibrB.t2k-w0.5.mod (nostruct-align/1ibrB.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1i/1ibrB/nostruct-align/1ibrB.t2k-w0.5.mod . Average NLL-Simple NULL score: -25.916674 /projects/compbio/experiments/models.97/pdb/1q/1qaeA/nostruct-align/1qaeA.t2k-w0.5.mod(21): Reading nostruct-align/1qaeA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc53-28394/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1q/1qaeA/nostruct-align/1qaeA.t2k-w0.5.mod (nostruct-align/1qaeA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1q/1qaeA/nostruct-align/1qaeA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.056686 /projects/compbio/experiments/models.97/pdb/1d/1dnlA/nostruct-align/1dnlA.t2k-w0.5.mod(22): Reading nostruct-align/1dnlA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc18-5319/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1d/1dnlA/nostruct-align/1dnlA.t2k-w0.5.mod (nostruct-align/1dnlA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1d/1dnlA/nostruct-align/1dnlA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.267672 /projects/compbio/experiments/models.97/pdb/1a/1akhA/nostruct-align/1akhA.t2k-w0.5.mod(21): Reading nostruct-align/1akhA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc30-7081/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1a/1akhA/nostruct-align/1akhA.t2k-w0.5.mod (nostruct-align/1akhA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1a/1akhA/nostruct-align/1akhA.t2k-w0.5.mod . Average NLL-Simple NULL score: -16.600685 /projects/compbio/experiments/models.97/pdb/1e/1e0fI/nostruct-align/1e0fI.t2k-w0.5.mod(21): Reading nostruct-align/1e0fI.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc63-27941/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1e0fI/nostruct-align/1e0fI.t2k-w0.5.mod (nostruct-align/1e0fI.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1e0fI/nostruct-align/1e0fI.t2k-w0.5.mod . Average NLL-Simple NULL score: -16.217699 /projects/compbio/experiments/models.97/pdb/1a/1akhB/nostruct-align/1akhB.t2k-w0.5.mod(21): Reading nostruct-align/1akhB.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc59-29103/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1a/1akhB/nostruct-align/1akhB.t2k-w0.5.mod (nostruct-align/1akhB.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1a/1akhB/nostruct-align/1akhB.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.360691 /projects/compbio/experiments/models.97/pdb/1e/1ejrB/nostruct-align/1ejrB.t2k-w0.5.mod(21): Reading nostruct-align/1ejrB.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc03-2390/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1ejrB/nostruct-align/1ejrB.t2k-w0.5.mod (nostruct-align/1ejrB.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1ejrB/nostruct-align/1ejrB.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.822685 /projects/compbio/experiments/models.97/pdb/1e/1ejrC/nostruct-align/1ejrC.t2k-w0.5.mod(22): Reading nostruct-align/1ejrC.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc77-25858/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1ejrC/nostruct-align/1ejrC.t2k-w0.5.mod (nostruct-align/1ejrC.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1ejrC/nostruct-align/1ejrC.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.183689 /projects/compbio/experiments/models.97/pdb/2b/2bn2A/nostruct-align/2bn2A.t2k-w0.5.mod(21): Reading nostruct-align/2bn2A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc87-21876/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/2b/2bn2A/nostruct-align/2bn2A.t2k-w0.5.mod (nostruct-align/2bn2A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/2b/2bn2A/nostruct-align/2bn2A.t2k-w0.5.mod . Average NLL-Simple NULL score: -16.579685 /projects/compbio/experiments/models.97/pdb/2b/2bltA/nostruct-align/2bltA.t2k-w0.5.mod(21): Reading nostruct-align/2bltA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc43-4107/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/2b/2bltA/nostruct-align/2bltA.t2k-w0.5.mod (nostruct-align/2bltA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/2b/2bltA/nostruct-align/2bltA.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.634695 /projects/compbio/experiments/models.97/pdb/1i/1i88A/nostruct-align/1i88A.t2k-w0.5.mod(22): Reading nostruct-align/1i88A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc28-5779/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1i/1i88A/nostruct-align/1i88A.t2k-w0.5.mod (nostruct-align/1i88A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1i/1i88A/nostruct-align/1i88A.t2k-w0.5.mod . Average NLL-Simple NULL score: -22.855686 /projects/compbio/experiments/models.97/pdb/1q/1qhoA/nostruct-align/1qhoA.t2k-w0.5.mod(21): Reading nostruct-align/1qhoA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc43-8585/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1q/1qhoA/nostruct-align/1qhoA.t2k-w0.5.mod (nostruct-align/1qhoA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1q/1qhoA/nostruct-align/1qhoA.t2k-w0.5.mod . Average NLL-Simple NULL score: -22.386694 /projects/compbio/experiments/models.97/pdb/1f/1fh6A/nostruct-align/1fh6A.t2k-w0.5.mod(21): Reading nostruct-align/1fh6A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc62-10032/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1fh6A/nostruct-align/1fh6A.t2k-w0.5.mod (nostruct-align/1fh6A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1fh6A/nostruct-align/1fh6A.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.215673 /projects/compbio/experiments/models.97/pdb/1f/1fna/nostruct-align/1fna.t2k-w0.5.mod(22): Reading nostruct-align/1fna.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc20-8365/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1fna/nostruct-align/1fna.t2k-w0.5.mod (nostruct-align/1fna.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1fna/nostruct-align/1fna.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.265680 /projects/compbio/experiments/models.97/pdb/1j/1jfaA/nostruct-align/1jfaA.t2k-w0.5.mod(22): Reading nostruct-align/1jfaA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc76-12008/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1j/1jfaA/nostruct-align/1jfaA.t2k-w0.5.mod (nostruct-align/1jfaA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1j/1jfaA/nostruct-align/1jfaA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.309689 /projects/compbio/experiments/models.97/pdb/1f/1f3vA/nostruct-align/1f3vA.t2k-w0.5.mod(22): Reading nostruct-align/1f3vA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc53-26678/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1f3vA/nostruct-align/1f3vA.t2k-w0.5.mod (nostruct-align/1f3vA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1f3vA/nostruct-align/1f3vA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.178686 /projects/compbio/experiments/models.97/pdb/1f/1fnc/nostruct-align/1fnc.t2k-w0.5.mod(22): Reading nostruct-align/1fnc.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc53-27184/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1fnc/nostruct-align/1fnc.t2k-w0.5.mod (nostruct-align/1fnc.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1fnc/nostruct-align/1fnc.t2k-w0.5.mod . Average NLL-Simple NULL score: -22.502676 /projects/compbio/experiments/models.97/pdb/1f/1fnd/nostruct-align/1fnd.t2k-w0.5.mod(21): Reading nostruct-align/1fnd.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc87-24968/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1fnd/nostruct-align/1fnd.t2k-w0.5.mod (nostruct-align/1fnd.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1fnd/nostruct-align/1fnd.t2k-w0.5.mod . Average NLL-Simple NULL score: -22.073683 /projects/compbio/experiments/models.97/pdb/1c/1c20A/nostruct-align/1c20A.t2k-w0.5.mod(21): Reading nostruct-align/1c20A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc23-17031/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1c/1c20A/nostruct-align/1c20A.t2k-w0.5.mod (nostruct-align/1c20A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1c/1c20A/nostruct-align/1c20A.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.045679 /projects/compbio/experiments/models.97/pdb/1f/1fnf/nostruct-align/1fnf.t2k-w0.5.mod(21): Reading nostruct-align/1fnf.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc23-12989/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1fnf/nostruct-align/1fnf.t2k-w0.5.mod (nostruct-align/1fnf.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1fnf/nostruct-align/1fnf.t2k-w0.5.mod . Average NLL-Simple NULL score: -23.023693 /projects/compbio/experiments/models.97/pdb/1d/1duvG/nostruct-align/1duvG.t2k-w0.5.mod(22): Reading nostruct-align/1duvG.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc41-25907/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1d/1duvG/nostruct-align/1duvG.t2k-w0.5.mod (nostruct-align/1duvG.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1d/1duvG/nostruct-align/1duvG.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.182678 /projects/compbio/experiments/models.97/pdb/1b/1bnxA/nostruct-align/1bnxA.t2k-w0.5.mod(21): Reading nostruct-align/1bnxA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc23-16341/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1b/1bnxA/nostruct-align/1bnxA.t2k-w0.5.mod (nostruct-align/1bnxA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1b/1bnxA/nostruct-align/1bnxA.t2k-w0.5.mod . Average NLL-Simple NULL score: -16.259697 /projects/compbio/experiments/models.97/pdb/1q/1qq7A/nostruct-align/1qq7A.t2k-w0.5.mod(22): Reading nostruct-align/1qq7A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc67-9693/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1q/1qq7A/nostruct-align/1qq7A.t2k-w0.5.mod (nostruct-align/1qq7A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1q/1qq7A/nostruct-align/1qq7A.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.596680 /projects/compbio/experiments/models.97/pdb/1q/1qoyA/nostruct-align/1qoyA.t2k-w0.5.mod(22): Reading nostruct-align/1qoyA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc73-27420/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1q/1qoyA/nostruct-align/1qoyA.t2k-w0.5.mod (nostruct-align/1qoyA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1q/1qoyA/nostruct-align/1qoyA.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.443682 /projects/compbio/experiments/models.97/pdb/1m/1mxa/nostruct-align/1mxa.t2k-w0.5.mod(21): Reading nostruct-align/1mxa.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc62-16805/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1m/1mxa/nostruct-align/1mxa.t2k-w0.5.mod (nostruct-align/1mxa.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1m/1mxa/nostruct-align/1mxa.t2k-w0.5.mod . Average NLL-Simple NULL score: -23.927691 /projects/compbio/experiments/models.97/pdb/1m/1mxb/nostruct-align/1mxb.t2k-w0.5.mod(21): Reading nostruct-align/1mxb.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc29-2645/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1m/1mxb/nostruct-align/1mxb.t2k-w0.5.mod (nostruct-align/1mxb.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1m/1mxb/nostruct-align/1mxb.t2k-w0.5.mod . Average NLL-Simple NULL score: -23.539692 /projects/compbio/experiments/models.97/pdb/1j/1jmkC/nostruct-align/1jmkC.t2k-w0.5.mod(22): Reading nostruct-align/1jmkC.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc65-30780/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1j/1jmkC/nostruct-align/1jmkC.t2k-w0.5.mod (nostruct-align/1jmkC.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1j/1jmkC/nostruct-align/1jmkC.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.843691 /projects/compbio/experiments/models.97/pdb/1g/1g7eA/nostruct-align/1g7eA.t2k-w0.5.mod(21): Reading nostruct-align/1g7eA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc55-8210/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1g/1g7eA/nostruct-align/1g7eA.t2k-w0.5.mod (nostruct-align/1g7eA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1g/1g7eA/nostruct-align/1g7eA.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.233692 /projects/compbio/experiments/models.97/pdb/1e/1eyeA/nostruct-align/1eyeA.t2k-w0.5.mod(22): Reading nostruct-align/1eyeA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc11-21595/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1eyeA/nostruct-align/1eyeA.t2k-w0.5.mod (nostruct-align/1eyeA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1eyeA/nostruct-align/1eyeA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.994671 /projects/compbio/experiments/models.97/pdb/1x/1xypA/nostruct-align/1xypA.t2k-w0.5.mod(21): Reading nostruct-align/1xypA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc66-19031/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1x/1xypA/nostruct-align/1xypA.t2k-w0.5.mod (nostruct-align/1xypA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1x/1xypA/nostruct-align/1xypA.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.304697 /projects/compbio/experiments/models.97/pdb/1s/1shdA/nostruct-align/1shdA.t2k-w0.5.mod(21): Reading nostruct-align/1shdA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc32-25916/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1s/1shdA/nostruct-align/1shdA.t2k-w0.5.mod (nostruct-align/1shdA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1s/1shdA/nostruct-align/1shdA.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.695677 /projects/compbio/experiments/models.97/pdb/1d/1d4aA/nostruct-align/1d4aA.t2k-w0.5.mod(22): Reading nostruct-align/1d4aA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc53-26082/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1d/1d4aA/nostruct-align/1d4aA.t2k-w0.5.mod (nostruct-align/1d4aA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1d/1d4aA/nostruct-align/1d4aA.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.839693 /projects/compbio/experiments/models.97/pdb/6p/6paxA/nostruct-align/6paxA.t2k-w0.5.mod(22): Reading nostruct-align/6paxA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc53-27963/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/6p/6paxA/nostruct-align/6paxA.t2k-w0.5.mod (nostruct-align/6paxA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/6p/6paxA/nostruct-align/6paxA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.073675 /projects/compbio/experiments/models.97/pdb/1f/1fukA/nostruct-align/1fukA.t2k-w0.5.mod(21): Reading nostruct-align/1fukA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc53-7252/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1fukA/nostruct-align/1fukA.t2k-w0.5.mod (nostruct-align/1fukA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1fukA/nostruct-align/1fukA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.475672 /projects/compbio/experiments/models.97/pdb/1e/1eciA/nostruct-align/1eciA.t2k-w0.5.mod(21): Reading nostruct-align/1eciA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc77-26066/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1eciA/nostruct-align/1eciA.t2k-w0.5.mod (nostruct-align/1eciA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1eciA/nostruct-align/1eciA.t2k-w0.5.mod . Average NLL-Simple NULL score: -15.911673 /projects/compbio/experiments/models.97/pdb/1i/1id1A/nostruct-align/1id1A.t2k-w0.5.mod(22): Reading nostruct-align/1id1A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc35-15949/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1i/1id1A/nostruct-align/1id1A.t2k-w0.5.mod (nostruct-align/1id1A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1i/1id1A/nostruct-align/1id1A.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.317684 /projects/compbio/experiments/models.97/pdb/1e/1eciB/nostruct-align/1eciB.t2k-w0.5.mod(21): Reading nostruct-align/1eciB.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc71-6119/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1eciB/nostruct-align/1eciB.t2k-w0.5.mod (nostruct-align/1eciB.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1eciB/nostruct-align/1eciB.t2k-w0.5.mod . Average NLL-Simple NULL score: -15.843694 /projects/compbio/experiments/models.97/pdb/1u/1uae/nostruct-align/1uae.t2k-w0.5.mod(21): Reading nostruct-align/1uae.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc73-11601/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1u/1uae/nostruct-align/1uae.t2k-w0.5.mod (nostruct-align/1uae.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1u/1uae/nostruct-align/1uae.t2k-w0.5.mod . Average NLL-Simple NULL score: -24.377697 /projects/compbio/experiments/models.97/pdb/1u/1uag/nostruct-align/1uag.t2k-w0.5.mod(22): Reading nostruct-align/1uag.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc54-2898/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1u/1uag/nostruct-align/1uag.t2k-w0.5.mod (nostruct-align/1uag.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1u/1uag/nostruct-align/1uag.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.603687 /projects/compbio/experiments/models.97/pdb/1f/1ffyA/nostruct-align/1ffyA.t2k-w0.5.mod(21): Reading nostruct-align/1ffyA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc12-15109/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1ffyA/nostruct-align/1ffyA.t2k-w0.5.mod (nostruct-align/1ffyA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1ffyA/nostruct-align/1ffyA.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.966692 /projects/compbio/experiments/models.97/pdb/1j/1jfbA/nostruct-align/1jfbA.t2k-w0.5.mod(22): Reading nostruct-align/1jfbA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc25-24135/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1j/1jfbA/nostruct-align/1jfbA.t2k-w0.5.mod (nostruct-align/1jfbA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1j/1jfbA/nostruct-align/1jfbA.t2k-w0.5.mod . Average NLL-Simple NULL score: -24.569672 /projects/compbio/experiments/models.97/pdb/1c/1ce3A/nostruct-align/1ce3A.t2k-w0.5.mod(21): Reading nostruct-align/1ce3A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc19-15796/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1c/1ce3A/nostruct-align/1ce3A.t2k-w0.5.mod (nostruct-align/1ce3A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1c/1ce3A/nostruct-align/1ce3A.t2k-w0.5.mod . Average NLL-Simple NULL score: -16.277676 /projects/compbio/experiments/models.97/pdb/1a/1at1A/nostruct-align/1at1A.t2k-w0.5.mod(22): Reading nostruct-align/1at1A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc70-20301/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1a/1at1A/nostruct-align/1at1A.t2k-w0.5.mod (nostruct-align/1at1A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1a/1at1A/nostruct-align/1at1A.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.142679 /projects/compbio/experiments/models.97/pdb/1k/1kbhA/nostruct-align/1kbhA.t2k-w0.5.mod(22): Reading nostruct-align/1kbhA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc54-3503/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1k/1kbhA/nostruct-align/1kbhA.t2k-w0.5.mod (nostruct-align/1kbhA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1k/1kbhA/nostruct-align/1kbhA.t2k-w0.5.mod . Average NLL-Simple NULL score: -16.209686 /projects/compbio/experiments/models.97/pdb/1k/1kbhB/nostruct-align/1kbhB.t2k-w0.5.mod(22): Reading nostruct-align/1kbhB.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc70-10881/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1k/1kbhB/nostruct-align/1kbhB.t2k-w0.5.mod (nostruct-align/1kbhB.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1k/1kbhB/nostruct-align/1kbhB.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.163675 /projects/compbio/experiments/models.97/pdb/1b/1bp7A/nostruct-align/1bp7A.t2k-w0.5.mod(21): Reading nostruct-align/1bp7A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc50-31870/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1b/1bp7A/nostruct-align/1bp7A.t2k-w0.5.mod (nostruct-align/1bp7A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1b/1bp7A/nostruct-align/1bp7A.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.930695 /projects/compbio/experiments/models.97/pdb/1q/1qq8A/nostruct-align/1qq8A.t2k-w0.5.mod(22): Reading nostruct-align/1qq8A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc63-26275/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1q/1qq8A/nostruct-align/1qq8A.t2k-w0.5.mod (nostruct-align/1qq8A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1q/1qq8A/nostruct-align/1qq8A.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.725683 /projects/compbio/experiments/models.97/pdb/1g/1g7fA/nostruct-align/1g7fA.t2k-w0.5.mod(22): Reading nostruct-align/1g7fA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc63-29369/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1g/1g7fA/nostruct-align/1g7fA.t2k-w0.5.mod (nostruct-align/1g7fA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1g/1g7fA/nostruct-align/1g7fA.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.536690 /projects/compbio/experiments/models.97/pdb/9a/9apiA/nostruct-align/9apiA.t2k-w0.5.mod(21): Reading nostruct-align/9apiA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc85-18977/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/9a/9apiA/nostruct-align/9apiA.t2k-w0.5.mod (nostruct-align/9apiA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/9a/9apiA/nostruct-align/9apiA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.300688 /projects/compbio/experiments/models.97/pdb/1d/1d4bA/nostruct-align/1d4bA.t2k-w0.5.mod(21): Reading nostruct-align/1d4bA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc48-24882/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1d/1d4bA/nostruct-align/1d4bA.t2k-w0.5.mod (nostruct-align/1d4bA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1d/1d4bA/nostruct-align/1d4bA.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.679697 /projects/compbio/experiments/models.97/pdb/9a/9apiB/nostruct-align/9apiB.t2k-w0.5.mod(21): Reading nostruct-align/9apiB.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc75-13019/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/9a/9apiB/nostruct-align/9apiB.t2k-w0.5.mod (nostruct-align/9apiB.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/9a/9apiB/nostruct-align/9apiB.t2k-w0.5.mod . Average NLL-Simple NULL score: -15.977692 /projects/compbio/experiments/models.97/pdb/1j/1jv4A/nostruct-align/1jv4A.t2k-w0.5.mod(22): Reading nostruct-align/1jv4A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc23-1162/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1j/1jv4A/nostruct-align/1jv4A.t2k-w0.5.mod (nostruct-align/1jv4A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1j/1jv4A/nostruct-align/1jv4A.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.475681 /projects/compbio/experiments/models.97/pdb/1m/1myn/nostruct-align/1myn.t2k-w0.5.mod(21): Reading nostruct-align/1myn.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc18-4327/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1m/1myn/nostruct-align/1myn.t2k-w0.5.mod (nostruct-align/1myn.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1m/1myn/nostruct-align/1myn.t2k-w0.5.mod . Average NLL-Simple NULL score: -15.902692 /projects/compbio/experiments/models.97/pdb/1q/1qagA/nostruct-align/1qagA.t2k-w0.5.mod(22): Reading nostruct-align/1qagA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc25-12299/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1q/1qagA/nostruct-align/1qagA.t2k-w0.5.mod (nostruct-align/1qagA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1q/1qagA/nostruct-align/1qagA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.201691 /projects/compbio/experiments/models.97/pdb/1m/1myo/nostruct-align/1myo.t2k-w0.5.mod(21): Reading nostruct-align/1myo.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc21-28103/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1m/1myo/nostruct-align/1myo.t2k-w0.5.mod (nostruct-align/1myo.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1m/1myo/nostruct-align/1myo.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.252678 /projects/compbio/experiments/models.97/pdb/1u/1ubi/nostruct-align/1ubi.t2k-w0.5.mod(21): Reading nostruct-align/1ubi.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc77-25216/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1u/1ubi/nostruct-align/1ubi.t2k-w0.5.mod (nostruct-align/1ubi.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1u/1ubi/nostruct-align/1ubi.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.033684 /projects/compbio/experiments/models.97/pdb/1m/1myt/nostruct-align/1myt.t2k-w0.5.mod(21): Reading nostruct-align/1myt.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc09-2495/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1m/1myt/nostruct-align/1myt.t2k-w0.5.mod (nostruct-align/1myt.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1m/1myt/nostruct-align/1myt.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.402693 /projects/compbio/experiments/models.97/pdb/1q/1qhqA/nostruct-align/1qhqA.t2k-w0.5.mod(21): Reading nostruct-align/1qhqA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc21-9834/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1q/1qhqA/nostruct-align/1qhqA.t2k-w0.5.mod (nostruct-align/1qhqA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1q/1qhqA/nostruct-align/1qhqA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.151697 /projects/compbio/experiments/models.97/pdb/1u/1ubq/nostruct-align/1ubq.t2k-w0.5.mod(21): Reading nostruct-align/1ubq.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc47-29797/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1u/1ubq/nostruct-align/1ubq.t2k-w0.5.mod (nostruct-align/1ubq.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1u/1ubq/nostruct-align/1ubq.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.894680 /projects/compbio/experiments/models.97/pdb/1f/1f56A/nostruct-align/1f56A.t2k-w0.5.mod(21): Reading nostruct-align/1f56A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc39-7205/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1f56A/nostruct-align/1f56A.t2k-w0.5.mod (nostruct-align/1f56A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1f56A/nostruct-align/1f56A.t2k-w0.5.mod . Average NLL-Simple NULL score: -16.759691 /projects/compbio/experiments/models.97/pdb/1c/1ce4A/nostruct-align/1ce4A.t2k-w0.5.mod(21): Reading nostruct-align/1ce4A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc19-15818/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1c/1ce4A/nostruct-align/1ce4A.t2k-w0.5.mod (nostruct-align/1ce4A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1c/1ce4A/nostruct-align/1ce4A.t2k-w0.5.mod . Average NLL-Simple NULL score: -15.983697 /projects/compbio/experiments/models.97/pdb/1c/1ccvA/nostruct-align/1ccvA.t2k-w0.5.mod(22): Reading nostruct-align/1ccvA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc53-7576/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1c/1ccvA/nostruct-align/1ccvA.t2k-w0.5.mod (nostruct-align/1ccvA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1c/1ccvA/nostruct-align/1ccvA.t2k-w0.5.mod . Average NLL-Simple NULL score: -15.990685 /projects/compbio/experiments/models.97/pdb/7t/7taa/nostruct-align/7taa.t2k-w0.5.mod(21): Reading nostruct-align/7taa.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc75-2986/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/7t/7taa/nostruct-align/7taa.t2k-w0.5.mod (nostruct-align/7taa.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/7t/7taa/nostruct-align/7taa.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.969685 /projects/compbio/experiments/models.97/pdb/1o/1oasA/nostruct-align/1oasA.t2k-w0.5.mod(21): Reading nostruct-align/1oasA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc62-10353/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1o/1oasA/nostruct-align/1oasA.t2k-w0.5.mod (nostruct-align/1oasA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1o/1oasA/nostruct-align/1oasA.t2k-w0.5.mod . Average NLL-Simple NULL score: -22.300671 /projects/compbio/experiments/models.97/pdb/1q/1qq9A/nostruct-align/1qq9A.t2k-w0.5.mod(22): Reading nostruct-align/1qq9A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc55-12609/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1q/1qq9A/nostruct-align/1qq9A.t2k-w0.5.mod (nostruct-align/1qq9A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1q/1qq9A/nostruct-align/1qq9A.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.870678 /projects/compbio/experiments/models.97/pdb/1j/1jmmA/nostruct-align/1jmmA.t2k-w0.5.mod(22): Reading nostruct-align/1jmmA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc43-23785/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1j/1jmmA/nostruct-align/1jmmA.t2k-w0.5.mod (nostruct-align/1jmmA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1j/1jmmA/nostruct-align/1jmmA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.776699 /projects/compbio/experiments/models.97/pdb/1u/1uby/nostruct-align/1uby.t2k-w0.5.mod(21): Reading nostruct-align/1uby.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc30-7388/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1u/1uby/nostruct-align/1uby.t2k-w0.5.mod (nostruct-align/1uby.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1u/1uby/nostruct-align/1uby.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.405687 /projects/compbio/experiments/models.97/pdb/1l/1lmb3/nostruct-align/1lmb3.t2k-w0.5.mod(22): Reading nostruct-align/1lmb3.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc28-3321/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1l/1lmb3/nostruct-align/1lmb3.t2k-w0.5.mod (nostruct-align/1lmb3.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1l/1lmb3/nostruct-align/1lmb3.t2k-w0.5.mod . Average NLL-Simple NULL score: -16.955685 /projects/compbio/experiments/models.97/pdb/1k/1kk1A/nostruct-align/1kk1A.t2k-w0.5.mod(22): Reading nostruct-align/1kk1A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc62-26189/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1k/1kk1A/nostruct-align/1kk1A.t2k-w0.5.mod (nostruct-align/1kk1A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1k/1kk1A/nostruct-align/1kk1A.t2k-w0.5.mod . Average NLL-Simple NULL score: -22.354692 /projects/compbio/experiments/models.97/pdb/1h/1hfoA/nostruct-align/1hfoA.t2k-w0.5.mod(22): Reading nostruct-align/1hfoA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc84-22854/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1h/1hfoA/nostruct-align/1hfoA.t2k-w0.5.mod (nostruct-align/1hfoA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1h/1hfoA/nostruct-align/1hfoA.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.342690 /projects/compbio/experiments/models.97/pdb/1s/1shfA/nostruct-align/1shfA.t2k-w0.5.mod(21): Reading nostruct-align/1shfA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc87-21373/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1s/1shfA/nostruct-align/1shfA.t2k-w0.5.mod (nostruct-align/1shfA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1s/1shfA/nostruct-align/1shfA.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.025675 /projects/compbio/experiments/models.97/pdb/1l/1lg7A/nostruct-align/1lg7A.t2k-w0.5.mod(22): Reading nostruct-align/1lg7A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc85-32318/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1l/1lg7A/nostruct-align/1lg7A.t2k-w0.5.mod (nostruct-align/1lg7A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1l/1lg7A/nostruct-align/1lg7A.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.052673 /projects/compbio/experiments/models.97/pdb/1f/1fps/nostruct-align/1fps.t2k-w0.5.mod(21): Reading nostruct-align/1fps.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc79-11289/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1fps/nostruct-align/1fps.t2k-w0.5.mod (nostruct-align/1fps.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1fps/nostruct-align/1fps.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.678686 /projects/compbio/experiments/models.97/pdb/1m/1mzm/nostruct-align/1mzm.t2k-w0.5.mod(21): Reading nostruct-align/1mzm.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc21-17110/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1m/1mzm/nostruct-align/1mzm.t2k-w0.5.mod (nostruct-align/1mzm.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1m/1mzm/nostruct-align/1mzm.t2k-w0.5.mod . Average NLL-Simple NULL score: -16.798681 /projects/compbio/experiments/models.97/pdb/1v/1vrtA/nostruct-align/1vrtA.t2k-w0.5.mod(21): Reading nostruct-align/1vrtA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc17-8020/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1v/1vrtA/nostruct-align/1vrtA.t2k-w0.5.mod (nostruct-align/1vrtA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1v/1vrtA/nostruct-align/1vrtA.t2k-w0.5.mod . Average NLL-Simple NULL score: -22.493670 /projects/compbio/experiments/models.97/pdb/1u/1uch/nostruct-align/1uch.t2k-w0.5.mod(22): Reading nostruct-align/1uch.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc53-17268/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1u/1uch/nostruct-align/1uch.t2k-w0.5.mod (nostruct-align/1uch.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1u/1uch/nostruct-align/1uch.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.866680 /projects/compbio/experiments/models.97/pdb/16/16vpA/nostruct-align/16vpA.t2k-w0.5.mod(22): Reading nostruct-align/16vpA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc24-7887/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/16/16vpA/nostruct-align/16vpA.t2k-w0.5.mod (nostruct-align/16vpA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/16/16vpA/nostruct-align/16vpA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.275684 /projects/compbio/experiments/models.97/pdb/1l/1l2wI/nostruct-align/1l2wI.t2k-w0.5.mod(22): Reading nostruct-align/1l2wI.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc69-30675/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1l/1l2wI/nostruct-align/1l2wI.t2k-w0.5.mod (nostruct-align/1l2wI.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1l/1l2wI/nostruct-align/1l2wI.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.070696 /projects/compbio/experiments/models.97/pdb/1f/1fh9A/nostruct-align/1fh9A.t2k-w0.5.mod(22): Reading nostruct-align/1fh9A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc85-3923/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1fh9A/nostruct-align/1fh9A.t2k-w0.5.mod (nostruct-align/1fh9A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1fh9A/nostruct-align/1fh9A.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.429695 /projects/compbio/experiments/models.97/pdb/1f/1f3yA/nostruct-align/1f3yA.t2k-w0.5.mod(21): Reading nostruct-align/1f3yA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc87-13336/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1f3yA/nostruct-align/1f3yA.t2k-w0.5.mod (nostruct-align/1f3yA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1f3yA/nostruct-align/1f3yA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.005682 /projects/compbio/experiments/models.97/pdb/1c/1ccwA/nostruct-align/1ccwA.t2k-w0.5.mod(22): Reading nostruct-align/1ccwA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc43-8596/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1c/1ccwA/nostruct-align/1ccwA.t2k-w0.5.mod (nostruct-align/1ccwA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1c/1ccwA/nostruct-align/1ccwA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.038685 /projects/compbio/experiments/models.97/pdb/1a/1at3A/nostruct-align/1at3A.t2k-w0.5.mod(21): Reading nostruct-align/1at3A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc33-23842/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1a/1at3A/nostruct-align/1at3A.t2k-w0.5.mod (nostruct-align/1at3A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1a/1at3A/nostruct-align/1at3A.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.018700 /projects/compbio/experiments/models.97/pdb/1c/1ccwB/nostruct-align/1ccwB.t2k-w0.5.mod(22): Reading nostruct-align/1ccwB.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc45-4221/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1c/1ccwB/nostruct-align/1ccwB.t2k-w0.5.mod (nostruct-align/1ccwB.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1c/1ccwB/nostruct-align/1ccwB.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.897694 /projects/compbio/experiments/models.97/pdb/1o/1oatA/nostruct-align/1oatA.t2k-w0.5.mod(21): Reading nostruct-align/1oatA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc41-17989/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1o/1oatA/nostruct-align/1oatA.t2k-w0.5.mod (nostruct-align/1oatA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1o/1oatA/nostruct-align/1oatA.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.662693 /projects/compbio/experiments/models.97/pdb/1r/1rlaA/nostruct-align/1rlaA.t2k-w0.5.mod(21): Reading nostruct-align/1rlaA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc69-4721/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1r/1rlaA/nostruct-align/1rlaA.t2k-w0.5.mod (nostruct-align/1rlaA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1r/1rlaA/nostruct-align/1rlaA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.159674 /projects/compbio/experiments/models.97/pdb/1e/1eyhA/nostruct-align/1eyhA.t2k-w0.5.mod(22): Reading nostruct-align/1eyhA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc11-21629/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1eyhA/nostruct-align/1eyhA.t2k-w0.5.mod (nostruct-align/1eyhA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1eyhA/nostruct-align/1eyhA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.145699 /projects/compbio/experiments/models.97/pdb/1d/1dgfA/nostruct-align/1dgfA.t2k-w0.5.mod(21): Reading nostruct-align/1dgfA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc18-1357/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1d/1dgfA/nostruct-align/1dgfA.t2k-w0.5.mod (nostruct-align/1dgfA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1d/1dgfA/nostruct-align/1dgfA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.814688 /projects/compbio/experiments/models.97/pdb/1u/1udb/nostruct-align/1udb.t2k-w0.5.mod(21): Reading nostruct-align/1udb.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc78-16664/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1u/1udb/nostruct-align/1udb.t2k-w0.5.mod (nostruct-align/1udb.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1u/1udb/nostruct-align/1udb.t2k-w0.5.mod . Average NLL-Simple NULL score: -22.052685 /projects/compbio/experiments/models.97/pdb/1u/1udc/nostruct-align/1udc.t2k-w0.5.mod(21): Reading nostruct-align/1udc.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc63-19993/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1u/1udc/nostruct-align/1udc.t2k-w0.5.mod (nostruct-align/1udc.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1u/1udc/nostruct-align/1udc.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.987688 /projects/compbio/experiments/models.97/pdb/1i/1i12A/nostruct-align/1i12A.t2k-w0.5.mod(22): Reading nostruct-align/1i12A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc44-19076/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1i/1i12A/nostruct-align/1i12A.t2k-w0.5.mod (nostruct-align/1i12A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1i/1i12A/nostruct-align/1i12A.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.904684 /projects/compbio/experiments/models.97/pdb/1f/1fa0A/nostruct-align/1fa0A.t2k-w0.5.mod(21): Reading nostruct-align/1fa0A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc77-3047/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1fa0A/nostruct-align/1fa0A.t2k-w0.5.mod (nostruct-align/1fa0A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1fa0A/nostruct-align/1fa0A.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.324696 /projects/compbio/experiments/models.97/pdb/1u/1udg/nostruct-align/1udg.t2k-w0.5.mod(21): Reading nostruct-align/1udg.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc46-9435/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1u/1udg/nostruct-align/1udg.t2k-w0.5.mod (nostruct-align/1udg.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1u/1udg/nostruct-align/1udg.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.062681 /projects/compbio/experiments/models.97/pdb/1f/1fa0B/nostruct-align/1fa0B.t2k-w0.5.mod(21): Reading nostruct-align/1fa0B.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc50-4365/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1fa0B/nostruct-align/1fa0B.t2k-w0.5.mod (nostruct-align/1fa0B.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1fa0B/nostruct-align/1fa0B.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.546680 /projects/compbio/experiments/models.97/pdb/1u/1udh/nostruct-align/1udh.t2k-w0.5.mod(21): Reading nostruct-align/1udh.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc30-16161/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1u/1udh/nostruct-align/1udh.t2k-w0.5.mod (nostruct-align/1udh.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1u/1udh/nostruct-align/1udh.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.045681 /projects/compbio/experiments/models.97/pdb/1h/1ho8A/nostruct-align/1ho8A.t2k-w0.5.mod(21): Reading nostruct-align/1ho8A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc45-26032/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1h/1ho8A/nostruct-align/1ho8A.t2k-w0.5.mod (nostruct-align/1ho8A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1h/1ho8A/nostruct-align/1ho8A.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.568693 /projects/compbio/experiments/models.97/pdb/1e/1el4A/nostruct-align/1el4A.t2k-w0.5.mod(21): Reading nostruct-align/1el4A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc87-12134/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1el4A/nostruct-align/1el4A.t2k-w0.5.mod (nostruct-align/1el4A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1el4A/nostruct-align/1el4A.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.862692 /projects/compbio/experiments/models.97/pdb/1e/1e7tA/nostruct-align/1e7tA.t2k-w0.5.mod(21): Reading nostruct-align/1e7tA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc63-5522/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1e7tA/nostruct-align/1e7tA.t2k-w0.5.mod (nostruct-align/1e7tA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1e7tA/nostruct-align/1e7tA.t2k-w0.5.mod . Average NLL-Simple NULL score: -16.557674 /projects/compbio/experiments/models.97/pdb/1k/1kxgA/nostruct-align/1kxgA.t2k-w0.5.mod(22): Reading nostruct-align/1kxgA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc35-4963/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1k/1kxgA/nostruct-align/1kxgA.t2k-w0.5.mod (nostruct-align/1kxgA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1k/1kxgA/nostruct-align/1kxgA.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.463675 /projects/compbio/experiments/models.97/pdb/1q/1qhsA/nostruct-align/1qhsA.t2k-w0.5.mod(21): Reading nostruct-align/1qhsA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc26-30537/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1q/1qhsA/nostruct-align/1qhsA.t2k-w0.5.mod (nostruct-align/1qhsA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1q/1qhsA/nostruct-align/1qhsA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.110699 /projects/compbio/experiments/models.97/pdb/1j/1jfeA/nostruct-align/1jfeA.t2k-w0.5.mod(22): Reading nostruct-align/1jfeA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc46-6355/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1j/1jfeA/nostruct-align/1jfeA.t2k-w0.5.mod (nostruct-align/1jfeA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1j/1jfeA/nostruct-align/1jfeA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.741678 /projects/compbio/experiments/models.97/pdb/1f/1frb/nostruct-align/1frb.t2k-w0.5.mod(21): Reading nostruct-align/1frb.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc22-27273/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1frb/nostruct-align/1frb.t2k-w0.5.mod (nostruct-align/1frb.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1frb/nostruct-align/1frb.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.423698 /projects/compbio/experiments/models.97/pdb/1d/1duzA/nostruct-align/1duzA.t2k-w0.5.mod(21): Reading nostruct-align/1duzA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc67-31010/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1d/1duzA/nostruct-align/1duzA.t2k-w0.5.mod (nostruct-align/1duzA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1d/1duzA/nostruct-align/1duzA.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.899691 /projects/compbio/experiments/models.97/pdb/1h/1hucA/nostruct-align/1hucA.t2k-w0.5.mod(21): Reading nostruct-align/1hucA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc52-1543/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1h/1hucA/nostruct-align/1hucA.t2k-w0.5.mod (nostruct-align/1hucA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1h/1hucA/nostruct-align/1hucA.t2k-w0.5.mod . Average NLL-Simple NULL score: -16.174698 /projects/compbio/experiments/models.97/pdb/1d/1duzB/nostruct-align/1duzB.t2k-w0.5.mod(21): Reading nostruct-align/1duzB.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc03-32279/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1d/1duzB/nostruct-align/1duzB.t2k-w0.5.mod (nostruct-align/1duzB.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1d/1duzB/nostruct-align/1duzB.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.949688 /projects/compbio/experiments/models.97/pdb/1f/1frd/nostruct-align/1frd.t2k-w0.5.mod(21): Reading nostruct-align/1frd.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc84-17406/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1frd/nostruct-align/1frd.t2k-w0.5.mod (nostruct-align/1frd.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1frd/nostruct-align/1frd.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.313688 /projects/compbio/experiments/models.97/pdb/1c/1c24A/nostruct-align/1c24A.t2k-w0.5.mod(22): Reading nostruct-align/1c24A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc36-15930/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1c/1c24A/nostruct-align/1c24A.t2k-w0.5.mod (nostruct-align/1c24A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1c/1c24A/nostruct-align/1c24A.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.913700 /projects/compbio/experiments/models.97/pdb/1f/1fre/nostruct-align/1fre.t2k-w0.5.mod(21): Reading nostruct-align/1fre.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc52-16440/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1fre/nostruct-align/1fre.t2k-w0.5.mod (nostruct-align/1fre.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1fre/nostruct-align/1fre.t2k-w0.5.mod . Average NLL-Simple NULL score: -15.174681 /projects/compbio/experiments/models.97/pdb/2c/2cpgA/nostruct-align/2cpgA.t2k-w0.5.mod(22): Reading nostruct-align/2cpgA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc60-12062/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/2c/2cpgA/nostruct-align/2cpgA.t2k-w0.5.mod (nostruct-align/2cpgA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/2c/2cpgA/nostruct-align/2cpgA.t2k-w0.5.mod . Average NLL-Simple NULL score: -16.470695 /projects/compbio/experiments/models.97/pdb/1c/1ckaA/nostruct-align/1ckaA.t2k-w0.5.mod(21): Reading nostruct-align/1ckaA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc11-21930/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1c/1ckaA/nostruct-align/1ckaA.t2k-w0.5.mod (nostruct-align/1ckaA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1c/1ckaA/nostruct-align/1ckaA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.188688 /projects/compbio/experiments/models.97/pdb/1k/1kiuB/nostruct-align/1kiuB.t2k-w0.5.mod(22): Reading nostruct-align/1kiuB.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc71-28613/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1k/1kiuB/nostruct-align/1kiuB.t2k-w0.5.mod (nostruct-align/1kiuB.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1k/1kiuB/nostruct-align/1kiuB.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.888689 /projects/compbio/experiments/models.97/pdb/1k/1k81A/nostruct-align/1k81A.t2k-w0.5.mod(22): Reading nostruct-align/1k81A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc59-4396/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1k/1k81A/nostruct-align/1k81A.t2k-w0.5.mod (nostruct-align/1k81A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1k/1k81A/nostruct-align/1k81A.t2k-w0.5.mod . Average NLL-Simple NULL score: -15.572698 /projects/compbio/experiments/models.97/pdb/1f/1fuoA/nostruct-align/1fuoA.t2k-w0.5.mod(22): Reading nostruct-align/1fuoA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc35-8582/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1fuoA/nostruct-align/1fuoA.t2k-w0.5.mod (nostruct-align/1fuoA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1fuoA/nostruct-align/1fuoA.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.671700 /projects/compbio/experiments/models.97/pdb/1j/1jtyA/nostruct-align/1jtyA.t2k-w0.5.mod(22): Reading nostruct-align/1jtyA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc46-6531/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1j/1jtyA/nostruct-align/1jtyA.t2k-w0.5.mod (nostruct-align/1jtyA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1j/1jtyA/nostruct-align/1jtyA.t2k-w0.5.mod . Average NLL-Simple NULL score: -22.488689 /projects/compbio/experiments/models.97/pdb/1p/1pedA/nostruct-align/1pedA.t2k-w0.5.mod(21): Reading nostruct-align/1pedA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc20-15896/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1p/1pedA/nostruct-align/1pedA.t2k-w0.5.mod (nostruct-align/1pedA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1p/1pedA/nostruct-align/1pedA.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.033676 /projects/compbio/experiments/models.97/pdb/1e/1ecmA/nostruct-align/1ecmA.t2k-w0.5.mod(22): Reading nostruct-align/1ecmA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc62-27775/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1ecmA/nostruct-align/1ecmA.t2k-w0.5.mod (nostruct-align/1ecmA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1ecmA/nostruct-align/1ecmA.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.931677 /projects/compbio/experiments/models.97/pdb/1e/1el5A/nostruct-align/1el5A.t2k-w0.5.mod(22): Reading nostruct-align/1el5A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc49-15197/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1el5A/nostruct-align/1el5A.t2k-w0.5.mod (nostruct-align/1el5A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1el5A/nostruct-align/1el5A.t2k-w0.5.mod . Average NLL-Simple NULL score: -23.124685 /projects/compbio/experiments/models.97/pdb/1e/1e7uA/nostruct-align/1e7uA.t2k-w0.5.mod(22): Reading nostruct-align/1e7uA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc74-10757/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1e7uA/nostruct-align/1e7uA.t2k-w0.5.mod (nostruct-align/1e7uA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1e7uA/nostruct-align/1e7uA.t2k-w0.5.mod . Average NLL-Simple NULL score: -23.791691 /projects/compbio/experiments/models.97/pdb/1q/1qj2A/nostruct-align/1qj2A.t2k-w0.5.mod(21): Reading nostruct-align/1qj2A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc69-26035/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1q/1qj2A/nostruct-align/1qj2A.t2k-w0.5.mod (nostruct-align/1qj2A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1q/1qj2A/nostruct-align/1qj2A.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.147686 /projects/compbio/experiments/models.97/pdb/1q/1qhtA/nostruct-align/1qhtA.t2k-w0.5.mod(22): Reading nostruct-align/1qhtA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc25-8671/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1q/1qhtA/nostruct-align/1qhtA.t2k-w0.5.mod (nostruct-align/1qhtA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1q/1qhtA/nostruct-align/1qhtA.t2k-w0.5.mod . Average NLL-Simple NULL score: -26.157686 /projects/compbio/experiments/models.97/pdb/4x/4xis/nostruct-align/4xis.t2k-w0.5.mod(21): Reading nostruct-align/4xis.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc39-32401/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/4x/4xis/nostruct-align/4xis.t2k-w0.5.mod (nostruct-align/4xis.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/4x/4xis/nostruct-align/4xis.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.095673 /projects/compbio/experiments/models.97/pdb/1q/1qj2B/nostruct-align/1qj2B.t2k-w0.5.mod(22): Reading nostruct-align/1qj2B.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc49-32491/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1q/1qj2B/nostruct-align/1qj2B.t2k-w0.5.mod (nostruct-align/1qj2B.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1q/1qj2B/nostruct-align/1qj2B.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.492697 /projects/compbio/experiments/models.97/pdb/1f/1fsb/nostruct-align/1fsb.t2k-w0.5.mod(21): Reading nostruct-align/1fsb.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc45-11605/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1fsb/nostruct-align/1fsb.t2k-w0.5.mod (nostruct-align/1fsb.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1fsb/nostruct-align/1fsb.t2k-w0.5.mod . Average NLL-Simple NULL score: -15.161681 /projects/compbio/experiments/models.97/pdb/1d/1dw9A/nostruct-align/1dw9A.t2k-w0.5.mod(22): Reading nostruct-align/1dw9A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc73-16619/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1d/1dw9A/nostruct-align/1dw9A.t2k-w0.5.mod (nostruct-align/1dw9A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1d/1dw9A/nostruct-align/1dw9A.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.321682 /projects/compbio/experiments/models.97/pdb/1q/1qj2C/nostruct-align/1qj2C.t2k-w0.5.mod(22): Reading nostruct-align/1qj2C.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc61-13827/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1q/1qj2C/nostruct-align/1qj2C.t2k-w0.5.mod (nostruct-align/1qj2C.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1q/1qj2C/nostruct-align/1qj2C.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.247671 /projects/compbio/experiments/models.97/pdb/1f/1fsd/nostruct-align/1fsd.t2k-w0.5.mod(21): Reading nostruct-align/1fsd.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc73-26164/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1fsd/nostruct-align/1fsd.t2k-w0.5.mod (nostruct-align/1fsd.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1fsd/nostruct-align/1fsd.t2k-w0.5.mod . Average NLL-Simple NULL score: -15.753679 /projects/compbio/experiments/models.97/pdb/1r/1rdzA/nostruct-align/1rdzA.t2k-w0.5.mod(22): Reading nostruct-align/1rdzA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc71-16491/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1r/1rdzA/nostruct-align/1rdzA.t2k-w0.5.mod (nostruct-align/1rdzA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1r/1rdzA/nostruct-align/1rdzA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.882671 /projects/compbio/experiments/models.97/pdb/1k/1kblA/nostruct-align/1kblA.t2k-w0.5.mod(22): Reading nostruct-align/1kblA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc47-14279/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1k/1kblA/nostruct-align/1kblA.t2k-w0.5.mod (nostruct-align/1kblA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1k/1kblA/nostruct-align/1kblA.t2k-w0.5.mod . Average NLL-Simple NULL score: -22.474695 /projects/compbio/experiments/models.97/pdb/1g/1g7jA/nostruct-align/1g7jA.t2k-w0.5.mod(21): Reading nostruct-align/1g7jA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc79-27544/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1g/1g7jA/nostruct-align/1g7jA.t2k-w0.5.mod (nostruct-align/1g7jA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1g/1g7jA/nostruct-align/1g7jA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.582676 /projects/compbio/experiments/models.97/pdb/1g/1g7jB/nostruct-align/1g7jB.t2k-w0.5.mod(21): Reading nostruct-align/1g7jB.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc64-8651/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1g/1g7jB/nostruct-align/1g7jB.t2k-w0.5.mod (nostruct-align/1g7jB.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1g/1g7jB/nostruct-align/1g7jB.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.288681 /projects/compbio/experiments/models.97/pdb/1k/1k82A/nostruct-align/1k82A.t2k-w0.5.mod(22): Reading nostruct-align/1k82A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc77-811/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1k/1k82A/nostruct-align/1k82A.t2k-w0.5.mod (nostruct-align/1k82A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1k/1k82A/nostruct-align/1k82A.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.664677 /projects/compbio/experiments/models.97/pdb/2o/2oneA/nostruct-align/2oneA.t2k-w0.5.mod(21): Reading nostruct-align/2oneA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc68-31463/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/2o/2oneA/nostruct-align/2oneA.t2k-w0.5.mod (nostruct-align/2oneA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/2o/2oneA/nostruct-align/2oneA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.804697 /projects/compbio/experiments/models.97/pdb/1h/1hh0A/nostruct-align/1hh0A.t2k-w0.5.mod(21): Reading nostruct-align/1hh0A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc67-26570/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1h/1hh0A/nostruct-align/1hh0A.t2k-w0.5.mod (nostruct-align/1hh0A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1h/1hh0A/nostruct-align/1hh0A.t2k-w0.5.mod . Average NLL-Simple NULL score: -16.323694 /projects/compbio/experiments/models.97/pdb/1d/1d4fA/nostruct-align/1d4fA.t2k-w0.5.mod(22): Reading nostruct-align/1d4fA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc33-1465/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1d/1d4fA/nostruct-align/1d4fA.t2k-w0.5.mod (nostruct-align/1d4fA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1d/1d4fA/nostruct-align/1d4fA.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.187674 /projects/compbio/experiments/models.97/pdb/1f/1fsu/nostruct-align/1fsu.t2k-w0.5.mod(21): Reading nostruct-align/1fsu.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc38-32080/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1fsu/nostruct-align/1fsu.t2k-w0.5.mod (nostruct-align/1fsu.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1fsu/nostruct-align/1fsu.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.466681 /projects/compbio/experiments/models.97/pdb/1n/1ntcA/nostruct-align/1ntcA.t2k-w0.5.mod(21): Reading nostruct-align/1ntcA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc16-23763/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1n/1ntcA/nostruct-align/1ntcA.t2k-w0.5.mod (nostruct-align/1ntcA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1n/1ntcA/nostruct-align/1ntcA.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.125683 /projects/compbio/experiments/models.97/pdb/1e/1e0lA/nostruct-align/1e0lA.t2k-w0.5.mod(21): Reading nostruct-align/1e0lA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc77-1514/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1e0lA/nostruct-align/1e0lA.t2k-w0.5.mod (nostruct-align/1e0lA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1e0lA/nostruct-align/1e0lA.t2k-w0.5.mod . Average NLL-Simple NULL score: -15.602687 /projects/compbio/experiments/models.97/pdb/1g/1gqvA/nostruct-align/1gqvA.t2k-w0.5.mod(22): Reading nostruct-align/1gqvA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc58-5078/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1g/1gqvA/nostruct-align/1gqvA.t2k-w0.5.mod (nostruct-align/1gqvA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1g/1gqvA/nostruct-align/1gqvA.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.042686 /projects/compbio/experiments/models.97/pdb/1d/1dp0A/nostruct-align/1dp0A.t2k-w0.5.mod(21): Reading nostruct-align/1dp0A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc23-9380/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1d/1dp0A/nostruct-align/1dp0A.t2k-w0.5.mod (nostruct-align/1dp0A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1d/1dp0A/nostruct-align/1dp0A.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.578695 /projects/compbio/experiments/models.97/pdb/1f/1fsz/nostruct-align/1fsz.t2k-w0.5.mod(22): Reading nostruct-align/1fsz.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc43-11756/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1fsz/nostruct-align/1fsz.t2k-w0.5.mod (nostruct-align/1fsz.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1fsz/nostruct-align/1fsz.t2k-w0.5.mod . Average NLL-Simple NULL score: -24.697697 /projects/compbio/experiments/models.97/pdb/2c/2cavA/nostruct-align/2cavA.t2k-w0.5.mod(21): Reading nostruct-align/2cavA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc99-18696/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/2c/2cavA/nostruct-align/2cavA.t2k-w0.5.mod (nostruct-align/2cavA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/2c/2cavA/nostruct-align/2cavA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.867678 /projects/compbio/experiments/models.97/pdb/1e/1el6A/nostruct-align/1el6A.t2k-w0.5.mod(22): Reading nostruct-align/1el6A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc32-449/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1el6A/nostruct-align/1el6A.t2k-w0.5.mod (nostruct-align/1el6A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1el6A/nostruct-align/1el6A.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.508673 /projects/compbio/experiments/models.97/pdb/1e/1el6B/nostruct-align/1el6B.t2k-w0.5.mod(21): Reading nostruct-align/1el6B.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc57-29758/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1el6B/nostruct-align/1el6B.t2k-w0.5.mod (nostruct-align/1el6B.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1el6B/nostruct-align/1el6B.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.508673 /projects/compbio/experiments/models.97/pdb/1i/1ijaA/nostruct-align/1ijaA.t2k-w0.5.mod(21): Reading nostruct-align/1ijaA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc75-11527/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1i/1ijaA/nostruct-align/1ijaA.t2k-w0.5.mod (nostruct-align/1ijaA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1i/1ijaA/nostruct-align/1ijaA.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.363684 /projects/compbio/experiments/models.97/pdb/1b/1b4rA/nostruct-align/1b4rA.t2k-w0.5.mod(21): Reading nostruct-align/1b4rA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc77-6606/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1b/1b4rA/nostruct-align/1b4rA.t2k-w0.5.mod (nostruct-align/1b4rA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1b/1b4rA/nostruct-align/1b4rA.t2k-w0.5.mod . Average NLL-Simple NULL score: -16.871675 /projects/compbio/experiments/models.97/pdb/1q/1qhuA/nostruct-align/1qhuA.t2k-w0.5.mod(21): Reading nostruct-align/1qhuA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc72-14777/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1q/1qhuA/nostruct-align/1qhuA.t2k-w0.5.mod (nostruct-align/1qhuA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1q/1qhuA/nostruct-align/1qhuA.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.009670 /projects/compbio/experiments/models.97/pdb/1j/1jfgA/nostruct-align/1jfgA.t2k-w0.5.mod(22): Reading nostruct-align/1jfgA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc49-16319/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1j/1jfgA/nostruct-align/1jfgA.t2k-w0.5.mod (nostruct-align/1jfgA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1j/1jfgA/nostruct-align/1jfgA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.309689 /projects/compbio/experiments/models.97/pdb/1y/1yghA/nostruct-align/1yghA.t2k-w0.5.mod(21): Reading nostruct-align/1yghA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc49-27208/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1y/1yghA/nostruct-align/1yghA.t2k-w0.5.mod (nostruct-align/1yghA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1y/1yghA/nostruct-align/1yghA.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.345684 /projects/compbio/experiments/models.97/pdb/1h/1hueA/nostruct-align/1hueA.t2k-w0.5.mod(21): Reading nostruct-align/1hueA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc73-12652/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1h/1hueA/nostruct-align/1hueA.t2k-w0.5.mod (nostruct-align/1hueA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1h/1hueA/nostruct-align/1hueA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.050673 /projects/compbio/experiments/models.97/pdb/1c/1cczA/nostruct-align/1cczA.t2k-w0.5.mod(22): Reading nostruct-align/1cczA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc86-6927/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1c/1cczA/nostruct-align/1cczA.t2k-w0.5.mod (nostruct-align/1cczA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1c/1cczA/nostruct-align/1cczA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.686687 /projects/compbio/experiments/models.97/pdb/4b/4bp2/nostruct-align/4bp2.t2k-w0.5.mod(21): Reading nostruct-align/4bp2.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc58-3478/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/4b/4bp2/nostruct-align/4bp2.t2k-w0.5.mod (nostruct-align/4bp2.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/4b/4bp2/nostruct-align/4bp2.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.356684 /projects/compbio/experiments/models.97/pdb/2b/2btcI/nostruct-align/2btcI.t2k-w0.5.mod(22): Reading nostruct-align/2btcI.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc55-21862/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/2b/2btcI/nostruct-align/2btcI.t2k-w0.5.mod (nostruct-align/2btcI.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/2b/2btcI/nostruct-align/2btcI.t2k-w0.5.mod . Average NLL-Simple NULL score: -15.326692 /projects/compbio/experiments/models.97/pdb/1h/1hh1A/nostruct-align/1hh1A.t2k-w0.5.mod(21): Reading nostruct-align/1hh1A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc76-1816/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1h/1hh1A/nostruct-align/1hh1A.t2k-w0.5.mod (nostruct-align/1hh1A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1h/1hh1A/nostruct-align/1hh1A.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.528681 /projects/compbio/experiments/models.97/pdb/1f/1fts/nostruct-align/1fts.t2k-w0.5.mod(21): Reading nostruct-align/1fts.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc43-8870/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1fts/nostruct-align/1fts.t2k-w0.5.mod (nostruct-align/1fts.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1fts/nostruct-align/1fts.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.072676 /projects/compbio/experiments/models.97/pdb/1a/1adeA/nostruct-align/1adeA.t2k-w0.5.mod(21): Reading nostruct-align/1adeA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc73-17871/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1a/1adeA/nostruct-align/1adeA.t2k-w0.5.mod (nostruct-align/1adeA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1a/1adeA/nostruct-align/1adeA.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.083672 /projects/compbio/experiments/models.97/pdb/3f/3fib/nostruct-align/3fib.t2k-w0.5.mod(21): Reading nostruct-align/3fib.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc26-18852/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/3f/3fib/nostruct-align/3fib.t2k-w0.5.mod (nostruct-align/3fib.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/3f/3fib/nostruct-align/3fib.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.637691 /projects/compbio/experiments/models.97/pdb/1f/1ftt/nostruct-align/1ftt.t2k-w0.5.mod(21): Reading nostruct-align/1ftt.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc96-28012/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1ftt/nostruct-align/1ftt.t2k-w0.5.mod (nostruct-align/1ftt.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1ftt/nostruct-align/1ftt.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.007685 /projects/compbio/experiments/models.97/pdb/1i/1ibyA/nostruct-align/1ibyA.t2k-w0.5.mod(21): Reading nostruct-align/1ibyA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc74-6495/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1i/1ibyA/nostruct-align/1ibyA.t2k-w0.5.mod (nostruct-align/1ibyA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1i/1ibyA/nostruct-align/1ibyA.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.616680 /projects/compbio/experiments/models.97/pdb/1g/1gs5A/nostruct-align/1gs5A.t2k-w0.5.mod(22): Reading nostruct-align/1gs5A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc47-28399/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1g/1gs5A/nostruct-align/1gs5A.t2k-w0.5.mod (nostruct-align/1gs5A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1g/1gs5A/nostruct-align/1gs5A.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.555681 /projects/compbio/experiments/models.97/pdb/1g/1gqwA/nostruct-align/1gqwA.t2k-w0.5.mod(22): Reading nostruct-align/1gqwA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc33-28898/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1g/1gqwA/nostruct-align/1gqwA.t2k-w0.5.mod (nostruct-align/1gqwA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1g/1gqwA/nostruct-align/1gqwA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.430676 /projects/compbio/experiments/models.97/pdb/1i/1ijbA/nostruct-align/1ijbA.t2k-w0.5.mod(22): Reading nostruct-align/1ijbA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc73-26802/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1i/1ijbA/nostruct-align/1ijbA.t2k-w0.5.mod (nostruct-align/1ijbA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1i/1ijbA/nostruct-align/1ijbA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.820683 /projects/compbio/experiments/models.97/pdb/1e/1e7wA/nostruct-align/1e7wA.t2k-w0.5.mod(22): Reading nostruct-align/1e7wA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc63-27415/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1e7wA/nostruct-align/1e7wA.t2k-w0.5.mod (nostruct-align/1e7wA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1e7wA/nostruct-align/1e7wA.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.032686 /projects/compbio/experiments/models.97/pdb/1d/1dgiR/nostruct-align/1dgiR.t2k-w0.5.mod(21): Reading nostruct-align/1dgiR.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc21-26916/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1d/1dgiR/nostruct-align/1dgiR.t2k-w0.5.mod (nostruct-align/1dgiR.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1d/1dgiR/nostruct-align/1dgiR.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.998697 /projects/compbio/experiments/models.97/pdb/1q/1qj4A/nostruct-align/1qj4A.t2k-w0.5.mod(22): Reading nostruct-align/1qj4A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc25-8883/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1q/1qj4A/nostruct-align/1qj4A.t2k-w0.5.mod (nostruct-align/1qj4A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1q/1qj4A/nostruct-align/1qj4A.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.301689 /projects/compbio/experiments/models.97/pdb/1q/1qhvA/nostruct-align/1qhvA.t2k-w0.5.mod(22): Reading nostruct-align/1qhvA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc74-4853/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1q/1qhvA/nostruct-align/1qhvA.t2k-w0.5.mod (nostruct-align/1qhvA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1q/1qhvA/nostruct-align/1qhvA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.656698 /projects/compbio/experiments/models.97/pdb/1f/1fua/nostruct-align/1fua.t2k-w0.5.mod(21): Reading nostruct-align/1fua.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc72-32352/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1fua/nostruct-align/1fua.t2k-w0.5.mod (nostruct-align/1fua.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1fua/nostruct-align/1fua.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.062695 /projects/compbio/experiments/models.97/pdb/1h/1hufA/nostruct-align/1hufA.t2k-w0.5.mod(22): Reading nostruct-align/1hufA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc71-28281/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1h/1hufA/nostruct-align/1hufA.t2k-w0.5.mod (nostruct-align/1hufA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1h/1hufA/nostruct-align/1hufA.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.967674 /projects/compbio/experiments/models.97/pdb/1c/1ce9A/nostruct-align/1ce9A.t2k-w0.5.mod(21): Reading nostruct-align/1ce9A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc73-24291/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1c/1ce9A/nostruct-align/1ce9A.t2k-w0.5.mod (nostruct-align/1ce9A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1c/1ce9A/nostruct-align/1ce9A.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.301699 /projects/compbio/experiments/models.97/pdb/1c/1ce9C/nostruct-align/1ce9C.t2k-w0.5.mod(21): Reading nostruct-align/1ce9C.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc04-17219/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1c/1ce9C/nostruct-align/1ce9C.t2k-w0.5.mod (nostruct-align/1ce9C.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1c/1ce9C/nostruct-align/1ce9C.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.301699 /projects/compbio/experiments/models.97/pdb/1v/1vdeA/nostruct-align/1vdeA.t2k-w0.5.mod(21): Reading nostruct-align/1vdeA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc25-24751/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1v/1vdeA/nostruct-align/1vdeA.t2k-w0.5.mod (nostruct-align/1vdeA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1v/1vdeA/nostruct-align/1vdeA.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.003672 /projects/compbio/experiments/models.97/pdb/1p/1pszA/nostruct-align/1pszA.t2k-w0.5.mod(21): Reading nostruct-align/1pszA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc22-32512/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1p/1pszA/nostruct-align/1pszA.t2k-w0.5.mod (nostruct-align/1pszA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1p/1pszA/nostruct-align/1pszA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.962679 /projects/compbio/experiments/models.97/pdb/1f/1fnhA/nostruct-align/1fnhA.t2k-w0.5.mod(21): Reading nostruct-align/1fnhA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc88-7937/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1fnhA/nostruct-align/1fnhA.t2k-w0.5.mod (nostruct-align/1fnhA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1fnhA/nostruct-align/1fnhA.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.463678 /projects/compbio/experiments/models.97/pdb/1j/1jmrA/nostruct-align/1jmrA.t2k-w0.5.mod(22): Reading nostruct-align/1jmrA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc69-22326/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1j/1jmrA/nostruct-align/1jmrA.t2k-w0.5.mod (nostruct-align/1jmrA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1j/1jmrA/nostruct-align/1jmrA.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.931698 /projects/compbio/experiments/models.97/pdb/1g/1gjnA/nostruct-align/1gjnA.t2k-w0.5.mod(22): Reading nostruct-align/1gjnA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc70-25650/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1g/1gjnA/nostruct-align/1gjnA.t2k-w0.5.mod (nostruct-align/1gjnA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1g/1gjnA/nostruct-align/1gjnA.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.339687 /projects/compbio/experiments/models.97/pdb/1c/1c8bA/nostruct-align/1c8bA.t2k-w0.5.mod(22): Reading nostruct-align/1c8bA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc87-4817/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1c/1c8bA/nostruct-align/1c8bA.t2k-w0.5.mod (nostruct-align/1c8bA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1c/1c8bA/nostruct-align/1c8bA.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.106672 /projects/compbio/experiments/models.97/pdb/1e/1eylA/nostruct-align/1eylA.t2k-w0.5.mod(21): Reading nostruct-align/1eylA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc58-32276/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1eylA/nostruct-align/1eylA.t2k-w0.5.mod (nostruct-align/1eylA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1eylA/nostruct-align/1eylA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.781675 /projects/compbio/experiments/models.97/pdb/1d/1dgjA/nostruct-align/1dgjA.t2k-w0.5.mod(22): Reading nostruct-align/1dgjA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc72-31908/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1d/1dgjA/nostruct-align/1dgjA.t2k-w0.5.mod (nostruct-align/1dgjA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1d/1dgjA/nostruct-align/1dgjA.t2k-w0.5.mod . Average NLL-Simple NULL score: -22.404673 /projects/compbio/experiments/models.97/pdb/1s/1shkA/nostruct-align/1shkA.t2k-w0.5.mod(21): Reading nostruct-align/1shkA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc38-15117/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1s/1shkA/nostruct-align/1shkA.t2k-w0.5.mod (nostruct-align/1shkA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1s/1shkA/nostruct-align/1shkA.t2k-w0.5.mod . Average NLL-Simple NULL score: -23.585680 /projects/compbio/experiments/models.97/pdb/1f/1fus/nostruct-align/1fus.t2k-w0.5.mod(21): Reading nostruct-align/1fus.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc22-26784/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1fus/nostruct-align/1fus.t2k-w0.5.mod (nostruct-align/1fus.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1fus/nostruct-align/1fus.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.453699 /projects/compbio/experiments/models.97/pdb/1f/1furA/nostruct-align/1furA.t2k-w0.5.mod(21): Reading nostruct-align/1furA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc74-26470/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1furA/nostruct-align/1furA.t2k-w0.5.mod (nostruct-align/1furA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1furA/nostruct-align/1furA.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.167683 /projects/compbio/experiments/models.97/pdb/1e/1ecpA/nostruct-align/1ecpA.t2k-w0.5.mod(21): Reading nostruct-align/1ecpA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc48-27718/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1ecpA/nostruct-align/1ecpA.t2k-w0.5.mod (nostruct-align/1ecpA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1ecpA/nostruct-align/1ecpA.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.421679 /projects/compbio/experiments/models.97/pdb/1i/1ibzA/nostruct-align/1ibzA.t2k-w0.5.mod(21): Reading nostruct-align/1ibzA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc80-27685/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1i/1ibzA/nostruct-align/1ibzA.t2k-w0.5.mod (nostruct-align/1ibzA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1i/1ibzA/nostruct-align/1ibzA.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.519690 /projects/compbio/experiments/models.97/pdb/1k/1kqaA/nostruct-align/1kqaA.t2k-w0.5.mod(22): Reading nostruct-align/1kqaA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc77-32248/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1k/1kqaA/nostruct-align/1kqaA.t2k-w0.5.mod (nostruct-align/1kqaA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1k/1kqaA/nostruct-align/1kqaA.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.212694 /projects/compbio/experiments/models.97/pdb/1q/1qamA/nostruct-align/1qamA.t2k-w0.5.mod(22): Reading nostruct-align/1qamA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc43-24133/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1q/1qamA/nostruct-align/1qamA.t2k-w0.5.mod (nostruct-align/1qamA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1q/1qamA/nostruct-align/1qamA.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.542671 /projects/compbio/experiments/models.97/pdb/1e/1e96B/nostruct-align/1e96B.t2k-w0.5.mod(21): Reading nostruct-align/1e96B.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc50-29420/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1e96B/nostruct-align/1e96B.t2k-w0.5.mod (nostruct-align/1e96B.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1e96B/nostruct-align/1e96B.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.082678 /projects/compbio/experiments/models.97/pdb/1b/1bgvA/nostruct-align/1bgvA.t2k-w0.5.mod(22): Reading nostruct-align/1bgvA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc26-30951/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1b/1bgvA/nostruct-align/1bgvA.t2k-w0.5.mod (nostruct-align/1bgvA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1b/1bgvA/nostruct-align/1bgvA.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.754684 /projects/compbio/experiments/models.97/pdb/1h/1hh2P/nostruct-align/1hh2P.t2k-w0.5.mod(22): Reading nostruct-align/1hh2P.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc71-24728/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1h/1hh2P/nostruct-align/1hh2P.t2k-w0.5.mod (nostruct-align/1hh2P.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1h/1hh2P/nostruct-align/1hh2P.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.569683 /projects/compbio/experiments/models.97/pdb/1q/1qj5A/nostruct-align/1qj5A.t2k-w0.5.mod(22): Reading nostruct-align/1qj5A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc48-15703/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1q/1qj5A/nostruct-align/1qj5A.t2k-w0.5.mod (nostruct-align/1qj5A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1q/1qj5A/nostruct-align/1qj5A.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.331692 /projects/compbio/experiments/models.97/pdb/1j/1jfiA/nostruct-align/1jfiA.t2k-w0.5.mod(22): Reading nostruct-align/1jfiA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc18-7983/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1j/1jfiA/nostruct-align/1jfiA.t2k-w0.5.mod (nostruct-align/1jfiA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1j/1jfiA/nostruct-align/1jfiA.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.514698 /projects/compbio/experiments/models.97/pdb/1j/1jfiB/nostruct-align/1jfiB.t2k-w0.5.mod(21): Reading nostruct-align/1jfiB.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc38-21999/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1j/1jfiB/nostruct-align/1jfiB.t2k-w0.5.mod (nostruct-align/1jfiB.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1j/1jfiB/nostruct-align/1jfiB.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.380690 /projects/compbio/experiments/models.97/pdb/1c/1c28A/nostruct-align/1c28A.t2k-w0.5.mod(22): Reading nostruct-align/1c28A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc77-19904/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1c/1c28A/nostruct-align/1c28A.t2k-w0.5.mod (nostruct-align/1c28A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1c/1c28A/nostruct-align/1c28A.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.070675 /projects/compbio/experiments/models.97/pdb/1g/1gceA/nostruct-align/1gceA.t2k-w0.5.mod(21): Reading nostruct-align/1gceA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc09-25866/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1g/1gceA/nostruct-align/1gceA.t2k-w0.5.mod (nostruct-align/1gceA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1g/1gceA/nostruct-align/1gceA.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.321671 /projects/compbio/experiments/models.97/pdb/1v/1vdfA/nostruct-align/1vdfA.t2k-w0.5.mod(22): Reading nostruct-align/1vdfA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc71-25974/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1v/1vdfA/nostruct-align/1vdfA.t2k-w0.5.mod (nostruct-align/1vdfA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1v/1vdfA/nostruct-align/1vdfA.t2k-w0.5.mod . Average NLL-Simple NULL score: -16.393673 /projects/compbio/experiments/models.97/pdb/1g/1g0cA/nostruct-align/1g0cA.t2k-w0.5.mod(21): Reading nostruct-align/1g0cA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc31-4408/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1g/1g0cA/nostruct-align/1g0cA.t2k-w0.5.mod (nostruct-align/1g0cA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1g/1g0cA/nostruct-align/1g0cA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.870693 /projects/compbio/experiments/models.97/pdb/1a/1arzC/nostruct-align/1arzC.t2k-w0.5.mod(21): Reading nostruct-align/1arzC.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc26-32099/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1a/1arzC/nostruct-align/1arzC.t2k-w0.5.mod (nostruct-align/1arzC.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1a/1arzC/nostruct-align/1arzC.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.178680 /projects/compbio/experiments/models.97/pdb/1j/1jmsA/nostruct-align/1jmsA.t2k-w0.5.mod(22): Reading nostruct-align/1jmsA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc55-23110/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1j/1jmsA/nostruct-align/1jmsA.t2k-w0.5.mod (nostruct-align/1jmsA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1j/1jmsA/nostruct-align/1jmsA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.882675 /projects/compbio/experiments/models.97/pdb/2p/2pcdA/nostruct-align/2pcdA.t2k-w0.5.mod(21): Reading nostruct-align/2pcdA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc44-30636/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/2p/2pcdA/nostruct-align/2pcdA.t2k-w0.5.mod (nostruct-align/2pcdA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/2p/2pcdA/nostruct-align/2pcdA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.700680 /projects/compbio/experiments/models.97/pdb/1f/1fvl/nostruct-align/1fvl.t2k-w0.5.mod(21): Reading nostruct-align/1fvl.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc73-15951/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1fvl/nostruct-align/1fvl.t2k-w0.5.mod (nostruct-align/1fvl.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1fvl/nostruct-align/1fvl.t2k-w0.5.mod . Average NLL-Simple NULL score: -16.226690 /projects/compbio/experiments/models.97/pdb/1c/1ckeA/nostruct-align/1ckeA.t2k-w0.5.mod(22): Reading nostruct-align/1ckeA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc47-11740/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1c/1ckeA/nostruct-align/1ckeA.t2k-w0.5.mod (nostruct-align/1ckeA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1c/1ckeA/nostruct-align/1ckeA.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.477695 /projects/compbio/experiments/models.97/pdb/1c/1c8cA/nostruct-align/1c8cA.t2k-w0.5.mod(22): Reading nostruct-align/1c8cA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc21-5302/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1c/1c8cA/nostruct-align/1c8cA.t2k-w0.5.mod (nostruct-align/1c8cA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1c/1c8cA/nostruct-align/1c8cA.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.227690 /projects/compbio/experiments/models.97/pdb/1k/1kiyA/nostruct-align/1kiyA.t2k-w0.5.mod(22): Reading nostruct-align/1kiyA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc54-12554/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1k/1kiyA/nostruct-align/1kiyA.t2k-w0.5.mod (nostruct-align/1kiyA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1k/1kiyA/nostruct-align/1kiyA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.286674 /projects/compbio/experiments/models.97/pdb/3m/3mefA/nostruct-align/3mefA.t2k-w0.5.mod(21): Reading nostruct-align/3mefA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc37-13551/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/3m/3mefA/nostruct-align/3mefA.t2k-w0.5.mod (nostruct-align/3mefA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/3m/3mefA/nostruct-align/3mefA.t2k-w0.5.mod . Average NLL-Simple NULL score: -16.841698 /projects/compbio/experiments/models.97/pdb/1k/1k6wA/nostruct-align/1k6wA.t2k-w0.5.mod(22): Reading nostruct-align/1k6wA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc38-27014/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1k/1k6wA/nostruct-align/1k6wA.t2k-w0.5.mod (nostruct-align/1k6wA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1k/1k6wA/nostruct-align/1k6wA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.714678 /projects/compbio/experiments/models.97/pdb/1h/1hfuA/nostruct-align/1hfuA.t2k-w0.5.mod(22): Reading nostruct-align/1hfuA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc62-28725/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1h/1hfuA/nostruct-align/1hfuA.t2k-w0.5.mod (nostruct-align/1hfuA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1h/1hfuA/nostruct-align/1hfuA.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.880684 /projects/compbio/experiments/models.97/pdb/1f/1fw1A/nostruct-align/1fw1A.t2k-w0.5.mod(22): Reading nostruct-align/1fw1A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc44-21715/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1fw1A/nostruct-align/1fw1A.t2k-w0.5.mod (nostruct-align/1fw1A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1fw1A/nostruct-align/1fw1A.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.400682 /projects/compbio/experiments/models.97/pdb/2p/2pcdM/nostruct-align/2pcdM.t2k-w0.5.mod(21): Reading nostruct-align/2pcdM.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc84-25082/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/2p/2pcdM/nostruct-align/2pcdM.t2k-w0.5.mod (nostruct-align/2pcdM.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/2p/2pcdM/nostruct-align/2pcdM.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.947678 /projects/compbio/experiments/models.97/pdb/1i/1i17A/nostruct-align/1i17A.t2k-w0.5.mod(21): Reading nostruct-align/1i17A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc51-24380/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1i/1i17A/nostruct-align/1i17A.t2k-w0.5.mod (nostruct-align/1i17A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1i/1i17A/nostruct-align/1i17A.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.663691 /projects/compbio/experiments/models.97/pdb/1d/1dp3A/nostruct-align/1dp3A.t2k-w0.5.mod(21): Reading nostruct-align/1dp3A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc51-24853/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1d/1dp3A/nostruct-align/1dp3A.t2k-w0.5.mod (nostruct-align/1dp3A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1d/1dp3A/nostruct-align/1dp3A.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.758699 /projects/compbio/experiments/models.97/pdb/2h/2hsdA/nostruct-align/2hsdA.t2k-w0.5.mod(21): Reading nostruct-align/2hsdA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc47-30422/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/2h/2hsdA/nostruct-align/2hsdA.t2k-w0.5.mod (nostruct-align/2hsdA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/2h/2hsdA/nostruct-align/2hsdA.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.108690 /projects/compbio/experiments/models.97/pdb/1l/1lmhA/nostruct-align/1lmhA.t2k-w0.5.mod(22): Reading nostruct-align/1lmhA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc68-30286/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1l/1lmhA/nostruct-align/1lmhA.t2k-w0.5.mod (nostruct-align/1lmhA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1l/1lmhA/nostruct-align/1lmhA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.686697 /projects/compbio/experiments/models.97/pdb/1d/1dgkN/nostruct-align/1dgkN.t2k-w0.5.mod(21): Reading nostruct-align/1dgkN.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc34-17329/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1d/1dgkN/nostruct-align/1dgkN.t2k-w0.5.mod (nostruct-align/1dgkN.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1d/1dgkN/nostruct-align/1dgkN.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.443686 /projects/compbio/experiments/models.97/pdb/1i/1ijdB/nostruct-align/1ijdB.t2k-w0.5.mod(21): Reading nostruct-align/1ijdB.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc29-5266/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1i/1ijdB/nostruct-align/1ijdB.t2k-w0.5.mod (nostruct-align/1ijdB.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1i/1ijdB/nostruct-align/1ijdB.t2k-w0.5.mod . Average NLL-Simple NULL score: -16.205696 /projects/compbio/experiments/models.97/pdb/1b/1bi5A/nostruct-align/1bi5A.t2k-w0.5.mod(22): Reading nostruct-align/1bi5A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc41-5937/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1b/1bi5A/nostruct-align/1bi5A.t2k-w0.5.mod (nostruct-align/1bi5A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1b/1bi5A/nostruct-align/1bi5A.t2k-w0.5.mod . Average NLL-Simple NULL score: -23.206690 /projects/compbio/experiments/models.97/pdb/1b/1b63A/nostruct-align/1b63A.t2k-w0.5.mod(22): Reading nostruct-align/1b63A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc60-10225/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1b/1b63A/nostruct-align/1b63A.t2k-w0.5.mod (nostruct-align/1b63A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1b/1b63A/nostruct-align/1b63A.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.892679 /projects/compbio/experiments/models.97/pdb/1k/1kxlA/nostruct-align/1kxlA.t2k-w0.5.mod(22): Reading nostruct-align/1kxlA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc64-31055/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1k/1kxlA/nostruct-align/1kxlA.t2k-w0.5.mod (nostruct-align/1kxlA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1k/1kxlA/nostruct-align/1kxlA.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.011686 /projects/compbio/experiments/models.97/pdb/1q/1qhxA/nostruct-align/1qhxA.t2k-w0.5.mod(22): Reading nostruct-align/1qhxA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc71-2582/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1q/1qhxA/nostruct-align/1qhxA.t2k-w0.5.mod (nostruct-align/1qhxA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1q/1qhxA/nostruct-align/1qhxA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.110699 /projects/compbio/experiments/models.97/pdb/1z/1zymA/nostruct-align/1zymA.t2k-w0.5.mod(21): Reading nostruct-align/1zymA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc69-12260/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1z/1zymA/nostruct-align/1zymA.t2k-w0.5.mod (nostruct-align/1zymA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1z/1zymA/nostruct-align/1zymA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.498682 /projects/compbio/experiments/models.97/pdb/1k/1kbpA/nostruct-align/1kbpA.t2k-w0.5.mod(22): Reading nostruct-align/1kbpA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc60-1665/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1k/1kbpA/nostruct-align/1kbpA.t2k-w0.5.mod (nostruct-align/1kbpA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1k/1kbpA/nostruct-align/1kbpA.t2k-w0.5.mod . Average NLL-Simple NULL score: -22.109686 /projects/compbio/experiments/models.97/pdb/1g/1g0dA/nostruct-align/1g0dA.t2k-w0.5.mod(22): Reading nostruct-align/1g0dA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc67-13584/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1g/1g0dA/nostruct-align/1g0dA.t2k-w0.5.mod (nostruct-align/1g0dA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1g/1g0dA/nostruct-align/1g0dA.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.301676 /projects/compbio/experiments/models.97/pdb/2b/2btfA/nostruct-align/2btfA.t2k-w0.5.mod(21): Reading nostruct-align/2btfA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc10-3886/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/2b/2btfA/nostruct-align/2btfA.t2k-w0.5.mod (nostruct-align/2btfA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/2b/2btfA/nostruct-align/2btfA.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.055677 /projects/compbio/experiments/models.97/pdb/1s/1sacA/nostruct-align/1sacA.t2k-w0.5.mod(22): Reading nostruct-align/1sacA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc63-26462/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1s/1sacA/nostruct-align/1sacA.t2k-w0.5.mod (nostruct-align/1sacA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1s/1sacA/nostruct-align/1sacA.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.698689 /projects/compbio/experiments/models.97/pdb/1q/1qpaA/nostruct-align/1qpaA.t2k-w0.5.mod(22): Reading nostruct-align/1qpaA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc18-9329/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1q/1qpaA/nostruct-align/1qpaA.t2k-w0.5.mod (nostruct-align/1qpaA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1q/1qpaA/nostruct-align/1qpaA.t2k-w0.5.mod . Average NLL-Simple NULL score: -24.288685 /projects/compbio/experiments/models.97/pdb/1j/1jmtA/nostruct-align/1jmtA.t2k-w0.5.mod(22): Reading nostruct-align/1jmtA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc60-11358/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1j/1jmtA/nostruct-align/1jmtA.t2k-w0.5.mod (nostruct-align/1jmtA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1j/1jmtA/nostruct-align/1jmtA.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.090691 /projects/compbio/experiments/models.97/pdb/1j/1jmtB/nostruct-align/1jmtB.t2k-w0.5.mod(22): Reading nostruct-align/1jmtB.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc30-16617/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1j/1jmtB/nostruct-align/1jmtB.t2k-w0.5.mod (nostruct-align/1jmtB.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1j/1jmtB/nostruct-align/1jmtB.t2k-w0.5.mod . Average NLL-Simple NULL score: -15.481698 /projects/compbio/experiments/models.97/pdb/15/153l/nostruct-align/153l.t2k-w0.5.mod(22): Reading nostruct-align/153l.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc66-1782/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/15/153l/nostruct-align/153l.t2k-w0.5.mod (nostruct-align/153l.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/15/153l/nostruct-align/153l.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.750679 /projects/compbio/experiments/models.97/pdb/1k/1k6xA/nostruct-align/1k6xA.t2k-w0.5.mod(22): Reading nostruct-align/1k6xA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc84-23222/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1k/1k6xA/nostruct-align/1k6xA.t2k-w0.5.mod (nostruct-align/1k6xA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1k/1k6xA/nostruct-align/1k6xA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.835688 /projects/compbio/experiments/models.97/pdb/1i/1ixxA/nostruct-align/1ixxA.t2k-w0.5.mod(21): Reading nostruct-align/1ixxA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc71-8362/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1i/1ixxA/nostruct-align/1ixxA.t2k-w0.5.mod (nostruct-align/1ixxA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1i/1ixxA/nostruct-align/1ixxA.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.076698 /projects/compbio/experiments/models.97/pdb/1i/1ixxB/nostruct-align/1ixxB.t2k-w0.5.mod(21): Reading nostruct-align/1ixxB.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc66-6692/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1i/1ixxB/nostruct-align/1ixxB.t2k-w0.5.mod (nostruct-align/1ixxB.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1i/1ixxB/nostruct-align/1ixxB.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.796698 /projects/compbio/experiments/models.97/pdb/1e/1ecrA/nostruct-align/1ecrA.t2k-w0.5.mod(22): Reading nostruct-align/1ecrA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc20-7725/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1ecrA/nostruct-align/1ecrA.t2k-w0.5.mod (nostruct-align/1ecrA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1ecrA/nostruct-align/1ecrA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.632696 /projects/compbio/experiments/models.97/pdb/1i/1i18A/nostruct-align/1i18A.t2k-w0.5.mod(21): Reading nostruct-align/1i18A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc19-17747/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1i/1i18A/nostruct-align/1i18A.t2k-w0.5.mod (nostruct-align/1i18A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1i/1i18A/nostruct-align/1i18A.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.191673 /projects/compbio/experiments/models.97/pdb/1d/1dp4A/nostruct-align/1dp4A.t2k-w0.5.mod(22): Reading nostruct-align/1dp4A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc11-20376/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1d/1dp4A/nostruct-align/1dp4A.t2k-w0.5.mod (nostruct-align/1dp4A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1d/1dp4A/nostruct-align/1dp4A.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.970676 /projects/compbio/experiments/models.97/pdb/3e/3eugA/nostruct-align/3eugA.t2k-w0.5.mod(21): Reading nostruct-align/3eugA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc19-26341/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/3e/3eugA/nostruct-align/3eugA.t2k-w0.5.mod (nostruct-align/3eugA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/3e/3eugA/nostruct-align/3eugA.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.797678 /projects/compbio/experiments/models.97/pdb/1b/1b4vA/nostruct-align/1b4vA.t2k-w0.5.mod(22): Reading nostruct-align/1b4vA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc72-20028/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1b/1b4vA/nostruct-align/1b4vA.t2k-w0.5.mod (nostruct-align/1b4vA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1b/1b4vA/nostruct-align/1b4vA.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.446684 /projects/compbio/experiments/models.97/pdb/1j/1jfkA/nostruct-align/1jfkA.t2k-w0.5.mod(22): Reading nostruct-align/1jfkA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc45-6245/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1j/1jfkA/nostruct-align/1jfkA.t2k-w0.5.mod (nostruct-align/1jfkA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1j/1jfkA/nostruct-align/1jfkA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.591682 /projects/compbio/experiments/models.97/pdb/1f/1fxd/nostruct-align/1fxd.t2k-w0.5.mod(21): Reading nostruct-align/1fxd.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc55-9682/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1fxd/nostruct-align/1fxd.t2k-w0.5.mod (nostruct-align/1fxd.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1fxd/nostruct-align/1fxd.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.088675 /projects/compbio/experiments/models.97/pdb/1l/1ltsA/nostruct-align/1ltsA.t2k-w0.5.mod(22): Reading nostruct-align/1ltsA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc85-14346/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1l/1ltsA/nostruct-align/1ltsA.t2k-w0.5.mod (nostruct-align/1ltsA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1l/1ltsA/nostruct-align/1ltsA.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.571678 /projects/compbio/experiments/models.97/pdb/1k/1kbqA/nostruct-align/1kbqA.t2k-w0.5.mod(22): Reading nostruct-align/1kbqA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc59-24753/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1k/1kbqA/nostruct-align/1kbqA.t2k-w0.5.mod (nostruct-align/1kbqA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1k/1kbqA/nostruct-align/1kbqA.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.139687 /projects/compbio/experiments/models.97/pdb/2k/2ki5A/nostruct-align/2ki5A.t2k-w0.5.mod(21): Reading nostruct-align/2ki5A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc89-27693/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/2k/2ki5A/nostruct-align/2ki5A.t2k-w0.5.mod (nostruct-align/2ki5A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/2k/2ki5A/nostruct-align/2ki5A.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.327698 /projects/compbio/experiments/models.97/pdb/1b/1bi6H/nostruct-align/1bi6H.t2k-w0.5.mod(21): Reading nostruct-align/1bi6H.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc54-20351/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1b/1bi6H/nostruct-align/1bi6H.t2k-w0.5.mod (nostruct-align/1bi6H.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1b/1bi6H/nostruct-align/1bi6H.t2k-w0.5.mod . Average NLL-Simple NULL score: -15.652676 /projects/compbio/experiments/models.97/pdb/1l/1ltsC/nostruct-align/1ltsC.t2k-w0.5.mod(22): Reading nostruct-align/1ltsC.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc71-31177/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1l/1ltsC/nostruct-align/1ltsC.t2k-w0.5.mod (nostruct-align/1ltsC.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1l/1ltsC/nostruct-align/1ltsC.t2k-w0.5.mod . Average NLL-Simple NULL score: -16.336679 /projects/compbio/experiments/models.97/pdb/1l/1ltsD/nostruct-align/1ltsD.t2k-w0.5.mod(21): Reading nostruct-align/1ltsD.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc51-1925/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1l/1ltsD/nostruct-align/1ltsD.t2k-w0.5.mod (nostruct-align/1ltsD.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1l/1ltsD/nostruct-align/1ltsD.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.565701 /projects/compbio/experiments/models.97/pdb/1m/1mpyA/nostruct-align/1mpyA.t2k-w0.5.mod(21): Reading nostruct-align/1mpyA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc59-28291/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1m/1mpyA/nostruct-align/1mpyA.t2k-w0.5.mod (nostruct-align/1mpyA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1m/1mpyA/nostruct-align/1mpyA.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.150700 /projects/compbio/experiments/models.97/pdb/1q/1qpbA/nostruct-align/1qpbA.t2k-w0.5.mod(21): Reading nostruct-align/1qpbA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc55-17408/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1q/1qpbA/nostruct-align/1qpbA.t2k-w0.5.mod (nostruct-align/1qpbA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1q/1qpbA/nostruct-align/1qpbA.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.816679 /projects/compbio/experiments/models.97/pdb/1j/1jmuA/nostruct-align/1jmuA.t2k-w0.5.mod(22): Reading nostruct-align/1jmuA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc61-14975/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1j/1jmuA/nostruct-align/1jmuA.t2k-w0.5.mod (nostruct-align/1jmuA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1j/1jmuA/nostruct-align/1jmuA.t2k-w0.5.mod . Average NLL-Simple NULL score: -15.834686 /projects/compbio/experiments/models.97/pdb/1j/1jmuB/nostruct-align/1jmuB.t2k-w0.5.mod(22): Reading nostruct-align/1jmuB.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc32-1728/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1j/1jmuB/nostruct-align/1jmuB.t2k-w0.5.mod (nostruct-align/1jmuB.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1j/1jmuB/nostruct-align/1jmuB.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.752693 /projects/compbio/experiments/models.97/pdb/1a/1azeA/nostruct-align/1azeA.t2k-w0.5.mod(21): Reading nostruct-align/1azeA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc82-13584/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1a/1azeA/nostruct-align/1azeA.t2k-w0.5.mod (nostruct-align/1azeA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1a/1azeA/nostruct-align/1azeA.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.895683 /projects/compbio/experiments/models.97/pdb/1g/1g7oA/nostruct-align/1g7oA.t2k-w0.5.mod(21): Reading nostruct-align/1g7oA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc16-2725/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1g/1g7oA/nostruct-align/1g7oA.t2k-w0.5.mod (nostruct-align/1g7oA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1g/1g7oA/nostruct-align/1g7oA.t2k-w0.5.mod . Average NLL-Simple NULL score: -22.634682 /projects/compbio/experiments/models.97/pdb/1x/1xyzA/nostruct-align/1xyzA.t2k-w0.5.mod(21): Reading nostruct-align/1xyzA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc06-18073/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1x/1xyzA/nostruct-align/1xyzA.t2k-w0.5.mod (nostruct-align/1xyzA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1x/1xyzA/nostruct-align/1xyzA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.650688 /projects/compbio/experiments/models.97/pdb/1h/1hh5A/nostruct-align/1hh5A.t2k-w0.5.mod(21): Reading nostruct-align/1hh5A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc70-25312/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1h/1hh5A/nostruct-align/1hh5A.t2k-w0.5.mod (nostruct-align/1hh5A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1h/1hh5A/nostruct-align/1hh5A.t2k-w0.5.mod . Average NLL-Simple NULL score: -16.537695 /projects/compbio/experiments/models.97/pdb/1e/1ecsA/nostruct-align/1ecsA.t2k-w0.5.mod(22): Reading nostruct-align/1ecsA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc54-14084/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1ecsA/nostruct-align/1ecsA.t2k-w0.5.mod (nostruct-align/1ecsA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1ecsA/nostruct-align/1ecsA.t2k-w0.5.mod . Average NLL-Simple NULL score: -22.325684 /projects/compbio/experiments/models.97/pdb/1t/1tdtA/nostruct-align/1tdtA.t2k-w0.5.mod(21): Reading nostruct-align/1tdtA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc87-2112/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1t/1tdtA/nostruct-align/1tdtA.t2k-w0.5.mod (nostruct-align/1tdtA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1t/1tdtA/nostruct-align/1tdtA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.213699 /projects/compbio/experiments/models.97/pdb/1i/1i19A/nostruct-align/1i19A.t2k-w0.5.mod(22): Reading nostruct-align/1i19A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc41-13383/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1i/1i19A/nostruct-align/1i19A.t2k-w0.5.mod (nostruct-align/1i19A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1i/1i19A/nostruct-align/1i19A.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.471682 /projects/compbio/experiments/models.97/pdb/1q/1qapA/nostruct-align/1qapA.t2k-w0.5.mod(21): Reading nostruct-align/1qapA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc64-30656/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1q/1qapA/nostruct-align/1qapA.t2k-w0.5.mod (nostruct-align/1qapA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1q/1qapA/nostruct-align/1qapA.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.651690 /projects/compbio/experiments/models.97/pdb/1d/1dp5B/nostruct-align/1dp5B.t2k-w0.5.mod(21): Reading nostruct-align/1dp5B.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc46-28726/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1d/1dp5B/nostruct-align/1dp5B.t2k-w0.5.mod (nostruct-align/1dp5B.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1d/1dp5B/nostruct-align/1dp5B.t2k-w0.5.mod . Average NLL-Simple NULL score: -15.526684 /projects/compbio/experiments/models.97/pdb/1s/1soxA/nostruct-align/1soxA.t2k-w0.5.mod(21): Reading nostruct-align/1soxA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc41-18790/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1s/1soxA/nostruct-align/1soxA.t2k-w0.5.mod (nostruct-align/1soxA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1s/1soxA/nostruct-align/1soxA.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.831682 /projects/compbio/experiments/models.97/pdb/1n/1nar/nostruct-align/1nar.t2k-w0.5.mod(22): Reading nostruct-align/1nar.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc41-14116/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1n/1nar/nostruct-align/1nar.t2k-w0.5.mod (nostruct-align/1nar.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1n/1nar/nostruct-align/1nar.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.102676 /projects/compbio/experiments/models.97/pdb/1i/1i7dA/nostruct-align/1i7dA.t2k-w0.5.mod(21): Reading nostruct-align/1i7dA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc05-27860/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1i/1i7dA/nostruct-align/1i7dA.t2k-w0.5.mod (nostruct-align/1i7dA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1i/1i7dA/nostruct-align/1i7dA.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.473700 /projects/compbio/experiments/models.97/pdb/1b/1b65A/nostruct-align/1b65A.t2k-w0.5.mod(22): Reading nostruct-align/1b65A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc72-31696/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1b/1b65A/nostruct-align/1b65A.t2k-w0.5.mod (nostruct-align/1b65A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1b/1b65A/nostruct-align/1b65A.t2k-w0.5.mod . Average NLL-Simple NULL score: -23.181673 /projects/compbio/experiments/models.97/pdb/1q/1qj8A/nostruct-align/1qj8A.t2k-w0.5.mod(22): Reading nostruct-align/1qj8A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc86-8844/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1q/1qj8A/nostruct-align/1qj8A.t2k-w0.5.mod (nostruct-align/1qj8A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1q/1qj8A/nostruct-align/1qj8A.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.466696 /projects/compbio/experiments/models.97/pdb/1j/1jflA/nostruct-align/1jflA.t2k-w0.5.mod(22): Reading nostruct-align/1jflA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc64-1646/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1j/1jflA/nostruct-align/1jflA.t2k-w0.5.mod (nostruct-align/1jflA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1j/1jflA/nostruct-align/1jflA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.317698 /projects/compbio/experiments/models.97/pdb/1n/1nc8/nostruct-align/1nc8.t2k-w0.5.mod(21): Reading nostruct-align/1nc8.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc38-6236/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1n/1nc8/nostruct-align/1nc8.t2k-w0.5.mod (nostruct-align/1nc8.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1n/1nc8/nostruct-align/1nc8.t2k-w0.5.mod . Average NLL-Simple NULL score: -15.250691 /projects/compbio/experiments/models.97/pdb/1f/1fyc/nostruct-align/1fyc.t2k-w0.5.mod(21): Reading nostruct-align/1fyc.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc18-28590/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1fyc/nostruct-align/1fyc.t2k-w0.5.mod (nostruct-align/1fyc.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1fyc/nostruct-align/1fyc.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.950686 /projects/compbio/experiments/models.97/pdb/1b/1bgyE/nostruct-align/1bgyE.t2k-w0.5.mod(21): Reading nostruct-align/1bgyE.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc16-23699/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1b/1bgyE/nostruct-align/1bgyE.t2k-w0.5.mod (nostruct-align/1bgyE.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1b/1bgyE/nostruct-align/1bgyE.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.051672 /projects/compbio/experiments/models.97/pdb/15/155c/nostruct-align/155c.t2k-w0.5.mod(21): Reading nostruct-align/155c.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc04-3551/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/15/155c/nostruct-align/155c.t2k-w0.5.mod (nostruct-align/155c.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/15/155c/nostruct-align/155c.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.303699 /projects/compbio/experiments/models.97/pdb/1i/1iqpA/nostruct-align/1iqpA.t2k-w0.5.mod(21): Reading nostruct-align/1iqpA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc45-16649/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1i/1iqpA/nostruct-align/1iqpA.t2k-w0.5.mod (nostruct-align/1iqpA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1i/1iqpA/nostruct-align/1iqpA.t2k-w0.5.mod . Average NLL-Simple NULL score: -22.991682 /projects/compbio/experiments/models.97/pdb/1m/1mr8A/nostruct-align/1mr8A.t2k-w0.5.mod(21): Reading nostruct-align/1mr8A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc76-25761/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1m/1mr8A/nostruct-align/1mr8A.t2k-w0.5.mod (nostruct-align/1mr8A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1m/1mr8A/nostruct-align/1mr8A.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.603680 /projects/compbio/experiments/models.97/pdb/1q/1qpcA/nostruct-align/1qpcA.t2k-w0.5.mod(22): Reading nostruct-align/1qpcA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc73-21826/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1q/1qpcA/nostruct-align/1qpcA.t2k-w0.5.mod (nostruct-align/1qpcA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1q/1qpcA/nostruct-align/1qpcA.t2k-w0.5.mod . Average NLL-Simple NULL score: -22.836691 /projects/compbio/experiments/models.97/pdb/1f/1fnlA/nostruct-align/1fnlA.t2k-w0.5.mod(21): Reading nostruct-align/1fnlA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc68-28390/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1fnlA/nostruct-align/1fnlA.t2k-w0.5.mod (nostruct-align/1fnlA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1fnlA/nostruct-align/1fnlA.t2k-w0.5.mod . Average NLL-Simple NULL score: -22.979671 /projects/compbio/experiments/models.97/pdb/1j/1jmvA/nostruct-align/1jmvA.t2k-w0.5.mod(22): Reading nostruct-align/1jmvA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc33-18131/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1j/1jmvA/nostruct-align/1jmvA.t2k-w0.5.mod (nostruct-align/1jmvA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1j/1jmvA/nostruct-align/1jmvA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.345695 /projects/compbio/experiments/models.97/pdb/1u/1ukz/nostruct-align/1ukz.t2k-w0.5.mod(21): Reading nostruct-align/1ukz.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc56-3886/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1u/1ukz/nostruct-align/1ukz.t2k-w0.5.mod (nostruct-align/1ukz.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1u/1ukz/nostruct-align/1ukz.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.923674 /projects/compbio/experiments/models.97/pdb/1g/1g7pA/nostruct-align/1g7pA.t2k-w0.5.mod(22): Reading nostruct-align/1g7pA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc71-14579/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1g/1g7pA/nostruct-align/1g7pA.t2k-w0.5.mod (nostruct-align/1g7pA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1g/1g7pA/nostruct-align/1g7pA.t2k-w0.5.mod . Average NLL-Simple NULL score: -22.833696 /projects/compbio/experiments/models.97/pdb/1e/1eypA/nostruct-align/1eypA.t2k-w0.5.mod(21): Reading nostruct-align/1eypA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc18-6686/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1eypA/nostruct-align/1eypA.t2k-w0.5.mod (nostruct-align/1eypA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1eypA/nostruct-align/1eypA.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.616676 /projects/compbio/experiments/models.97/pdb/1g/1g7pB/nostruct-align/1g7pB.t2k-w0.5.mod(22): Reading nostruct-align/1g7pB.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc62-3430/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1g/1g7pB/nostruct-align/1g7pB.t2k-w0.5.mod (nostruct-align/1g7pB.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1g/1g7pB/nostruct-align/1g7pB.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.785677 /projects/compbio/experiments/models.97/pdb/1k/1k6zA/nostruct-align/1k6zA.t2k-w0.5.mod(22): Reading nostruct-align/1k6zA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc58-9617/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1k/1k6zA/nostruct-align/1k6zA.t2k-w0.5.mod (nostruct-align/1k6zA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1k/1k6zA/nostruct-align/1k6zA.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.171698 /projects/compbio/experiments/models.97/pdb/1d/1dgnA/nostruct-align/1dgnA.t2k-w0.5.mod(21): Reading nostruct-align/1dgnA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc58-691/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1d/1dgnA/nostruct-align/1dgnA.t2k-w0.5.mod (nostruct-align/1dgnA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1d/1dgnA/nostruct-align/1dgnA.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.284681 /projects/compbio/experiments/models.97/pdb/1l/1lfaA/nostruct-align/1lfaA.t2k-w0.5.mod(21): Reading nostruct-align/1lfaA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc10-21339/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1l/1lfaA/nostruct-align/1lfaA.t2k-w0.5.mod (nostruct-align/1lfaA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1l/1lfaA/nostruct-align/1lfaA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.181692 /projects/compbio/experiments/models.97/pdb/1h/1h54A/nostruct-align/1h54A.t2k-w0.5.mod(22): Reading nostruct-align/1h54A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc18-10202/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1h/1h54A/nostruct-align/1h54A.t2k-w0.5.mod (nostruct-align/1h54A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1h/1h54A/nostruct-align/1h54A.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.907692 /projects/compbio/experiments/models.97/pdb/1a/1adjA/nostruct-align/1adjA.t2k-w0.5.mod(21): Reading nostruct-align/1adjA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc85-24533/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1a/1adjA/nostruct-align/1adjA.t2k-w0.5.mod (nostruct-align/1adjA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1a/1adjA/nostruct-align/1adjA.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.295698 /projects/compbio/experiments/models.97/pdb/1h/1h54B/nostruct-align/1h54B.t2k-w0.5.mod(21): Reading nostruct-align/1h54B.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc83-10884/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1h/1h54B/nostruct-align/1h54B.t2k-w0.5.mod (nostruct-align/1h54B.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1h/1h54B/nostruct-align/1h54B.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.514685 /projects/compbio/experiments/models.97/pdb/1e/1ee2A/nostruct-align/1ee2A.t2k-w0.5.mod(21): Reading nostruct-align/1ee2A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc70-1373/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1ee2A/nostruct-align/1ee2A.t2k-w0.5.mod (nostruct-align/1ee2A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1ee2A/nostruct-align/1ee2A.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.102680 /projects/compbio/experiments/models.97/pdb/1g/1gl0I/nostruct-align/1gl0I.t2k-w0.5.mod(22): Reading nostruct-align/1gl0I.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc46-5815/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1g/1gl0I/nostruct-align/1gl0I.t2k-w0.5.mod (nostruct-align/1gl0I.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1g/1gl0I/nostruct-align/1gl0I.t2k-w0.5.mod . Average NLL-Simple NULL score: -15.227670 /projects/compbio/experiments/models.97/pdb/1e/1e20A/nostruct-align/1e20A.t2k-w0.5.mod(22): Reading nostruct-align/1e20A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc66-24884/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1e20A/nostruct-align/1e20A.t2k-w0.5.mod (nostruct-align/1e20A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1e20A/nostruct-align/1e20A.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.697691 /projects/compbio/experiments/models.97/pdb/1f/1fa8A/nostruct-align/1fa8A.t2k-w0.5.mod(21): Reading nostruct-align/1fa8A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc70-25425/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1fa8A/nostruct-align/1fa8A.t2k-w0.5.mod (nostruct-align/1fa8A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1fa8A/nostruct-align/1fa8A.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.646700 /projects/compbio/experiments/models.97/pdb/1a/1a8rA/nostruct-align/1a8rA.t2k-w0.5.mod(22): Reading nostruct-align/1a8rA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc74-1696/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1a/1a8rA/nostruct-align/1a8rA.t2k-w0.5.mod (nostruct-align/1a8rA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1a/1a8rA/nostruct-align/1a8rA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.159683 /projects/compbio/experiments/models.97/pdb/12/12asA/nostruct-align/12asA.t2k-w0.5.mod(22): Reading nostruct-align/12asA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc84-29301/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/12/12asA/nostruct-align/12asA.t2k-w0.5.mod (nostruct-align/12asA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/12/12asA/nostruct-align/12asA.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.143692 /projects/compbio/experiments/models.97/pdb/1i/1ijgA/nostruct-align/1ijgA.t2k-w0.5.mod(22): Reading nostruct-align/1ijgA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc20-8578/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1i/1ijgA/nostruct-align/1ijgA.t2k-w0.5.mod (nostruct-align/1ijgA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1i/1ijgA/nostruct-align/1ijgA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.693678 /projects/compbio/experiments/models.97/pdb/3s/3sdhA/nostruct-align/3sdhA.t2k-w0.5.mod(22): Reading nostruct-align/3sdhA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc57-17948/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/3s/3sdhA/nostruct-align/3sdhA.t2k-w0.5.mod (nostruct-align/3sdhA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/3s/3sdhA/nostruct-align/3sdhA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.053698 /projects/compbio/experiments/models.97/pdb/1u/1ulo/nostruct-align/1ulo.t2k-w0.5.mod(21): Reading nostruct-align/1ulo.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc26-12818/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1u/1ulo/nostruct-align/1ulo.t2k-w0.5.mod (nostruct-align/1ulo.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1u/1ulo/nostruct-align/1ulo.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.496681 /projects/compbio/experiments/models.97/pdb/1b/1b66A/nostruct-align/1b66A.t2k-w0.5.mod(21): Reading nostruct-align/1b66A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc47-14906/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1b/1b66A/nostruct-align/1b66A.t2k-w0.5.mod (nostruct-align/1b66A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1b/1b66A/nostruct-align/1b66A.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.902695 /projects/compbio/experiments/models.97/pdb/1j/1jfmA/nostruct-align/1jfmA.t2k-w0.5.mod(22): Reading nostruct-align/1jfmA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc34-2545/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1j/1jfmA/nostruct-align/1jfmA.t2k-w0.5.mod (nostruct-align/1jfmA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1j/1jfmA/nostruct-align/1jfmA.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.495686 /projects/compbio/experiments/models.97/pdb/1u/1ulp/nostruct-align/1ulp.t2k-w0.5.mod(21): Reading nostruct-align/1ulp.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc13-25016/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1u/1ulp/nostruct-align/1ulp.t2k-w0.5.mod (nostruct-align/1ulp.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1u/1ulp/nostruct-align/1ulp.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.496681 /projects/compbio/experiments/models.97/pdb/1i/1iqqA/nostruct-align/1iqqA.t2k-w0.5.mod(22): Reading nostruct-align/1iqqA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc38-11220/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1i/1iqqA/nostruct-align/1iqqA.t2k-w0.5.mod (nostruct-align/1iqqA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1i/1iqqA/nostruct-align/1iqqA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.056692 /projects/compbio/experiments/models.97/pdb/1j/1jo5A/nostruct-align/1jo5A.t2k-w0.5.mod(22): Reading nostruct-align/1jo5A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc49-4753/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1j/1jo5A/nostruct-align/1jo5A.t2k-w0.5.mod (nostruct-align/1jo5A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1j/1jo5A/nostruct-align/1jo5A.t2k-w0.5.mod . Average NLL-Simple NULL score: -16.420677 /projects/compbio/experiments/models.97/pdb/1c/1ckiA/nostruct-align/1ckiA.t2k-w0.5.mod(21): Reading nostruct-align/1ckiA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc61-31772/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1c/1ckiA/nostruct-align/1ckiA.t2k-w0.5.mod (nostruct-align/1ckiA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1c/1ckiA/nostruct-align/1ckiA.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.719692 /projects/compbio/experiments/models.97/pdb/1c/1c8gA/nostruct-align/1c8gA.t2k-w0.5.mod(22): Reading nostruct-align/1c8gA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc49-2388/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1c/1c8gA/nostruct-align/1c8gA.t2k-w0.5.mod (nostruct-align/1c8gA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1c/1c8gA/nostruct-align/1c8gA.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.877699 /projects/compbio/experiments/models.97/pdb/1e/1eyqA/nostruct-align/1eyqA.t2k-w0.5.mod(22): Reading nostruct-align/1eyqA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc61-13090/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1eyqA/nostruct-align/1eyqA.t2k-w0.5.mod (nostruct-align/1eyqA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1eyqA/nostruct-align/1eyqA.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.607693 /projects/compbio/experiments/models.97/pdb/1n/1ncg/nostruct-align/1ncg.t2k-w0.5.mod(21): Reading nostruct-align/1ncg.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc08-29260/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1n/1ncg/nostruct-align/1ncg.t2k-w0.5.mod (nostruct-align/1ncg.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1n/1ncg/nostruct-align/1ncg.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.374693 /projects/compbio/experiments/models.97/pdb/1h/1hh7A/nostruct-align/1hh7A.t2k-w0.5.mod(22): Reading nostruct-align/1hh7A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc44-16914/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1h/1hh7A/nostruct-align/1hh7A.t2k-w0.5.mod (nostruct-align/1hh7A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1h/1hh7A/nostruct-align/1hh7A.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.701672 /projects/compbio/experiments/models.97/pdb/1a/1a1iA/nostruct-align/1a1iA.t2k-w0.5.mod(21): Reading nostruct-align/1a1iA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc06-17076/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1a/1a1iA/nostruct-align/1a1iA.t2k-w0.5.mod (nostruct-align/1a1iA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1a/1a1iA/nostruct-align/1a1iA.t2k-w0.5.mod . Average NLL-Simple NULL score: -22.426689 /projects/compbio/experiments/models.97/pdb/1g/1gl1I/nostruct-align/1gl1I.t2k-w0.5.mod(22): Reading nostruct-align/1gl1I.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc62-29819/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1g/1gl1I/nostruct-align/1gl1I.t2k-w0.5.mod (nostruct-align/1gl1I.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1g/1gl1I/nostruct-align/1gl1I.t2k-w0.5.mod . Average NLL-Simple NULL score: -15.381673 /projects/compbio/experiments/models.97/pdb/1t/1tf4A/nostruct-align/1tf4A.t2k-w0.5.mod(22): Reading nostruct-align/1tf4A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc46-5925/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1t/1tf4A/nostruct-align/1tf4A.t2k-w0.5.mod (nostruct-align/1tf4A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1t/1tf4A/nostruct-align/1tf4A.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.891674 /projects/compbio/experiments/models.97/pdb/1k/1kqfA/nostruct-align/1kqfA.t2k-w0.5.mod(22): Reading nostruct-align/1kqfA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc85-4542/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1k/1kqfA/nostruct-align/1kqfA.t2k-w0.5.mod (nostruct-align/1kqfA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1k/1kqfA/nostruct-align/1kqfA.t2k-w0.5.mod . Average NLL-Simple NULL score: -27.407688 /projects/compbio/experiments/models.97/pdb/1k/1kqfB/nostruct-align/1kqfB.t2k-w0.5.mod(22): Reading nostruct-align/1kqfB.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc34-20540/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1k/1kqfB/nostruct-align/1kqfB.t2k-w0.5.mod (nostruct-align/1kqfB.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1k/1kqfB/nostruct-align/1kqfB.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.210684 /projects/compbio/experiments/models.97/pdb/1d/1dnyA/nostruct-align/1dnyA.t2k-w0.5.mod(21): Reading nostruct-align/1dnyA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc64-25346/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1d/1dnyA/nostruct-align/1dnyA.t2k-w0.5.mod (nostruct-align/1dnyA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1d/1dnyA/nostruct-align/1dnyA.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.672672 /projects/compbio/experiments/models.97/pdb/1k/1kqfC/nostruct-align/1kqfC.t2k-w0.5.mod(22): Reading nostruct-align/1kqfC.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc36-13025/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1k/1kqfC/nostruct-align/1kqfC.t2k-w0.5.mod (nostruct-align/1kqfC.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1k/1kqfC/nostruct-align/1kqfC.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.093691 /projects/compbio/experiments/models.97/pdb/1n/1ncs/nostruct-align/1ncs.t2k-w0.5.mod(21): Reading nostruct-align/1ncs.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc87-14777/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1n/1ncs/nostruct-align/1ncs.t2k-w0.5.mod (nostruct-align/1ncs.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1n/1ncs/nostruct-align/1ncs.t2k-w0.5.mod . Average NLL-Simple NULL score: -15.845676 /projects/compbio/experiments/models.97/pdb/1n/1nct/nostruct-align/1nct.t2k-w0.5.mod(21): Reading nostruct-align/1nct.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc11-17333/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1n/1nct/nostruct-align/1nct.t2k-w0.5.mod (nostruct-align/1nct.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1n/1nct/nostruct-align/1nct.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.166670 /projects/compbio/experiments/models.97/pdb/1i/1ijhA/nostruct-align/1ijhA.t2k-w0.5.mod(22): Reading nostruct-align/1ijhA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc36-12742/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1i/1ijhA/nostruct-align/1ijhA.t2k-w0.5.mod (nostruct-align/1ijhA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1i/1ijhA/nostruct-align/1ijhA.t2k-w0.5.mod . Average NLL-Simple NULL score: -22.149687 /projects/compbio/experiments/models.97/pdb/1i/1i7fA/nostruct-align/1i7fA.t2k-w0.5.mod(22): Reading nostruct-align/1i7fA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc84-32401/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1i/1i7fA/nostruct-align/1i7fA.t2k-w0.5.mod (nostruct-align/1i7fA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1i/1i7fA/nostruct-align/1i7fA.t2k-w0.5.mod . Average NLL-Simple NULL score: -23.573698 /projects/compbio/experiments/models.97/pdb/1g/1gyfA/nostruct-align/1gyfA.t2k-w0.5.mod(21): Reading nostruct-align/1gyfA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc97-5531/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1g/1gyfA/nostruct-align/1gyfA.t2k-w0.5.mod (nostruct-align/1gyfA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1g/1gyfA/nostruct-align/1gyfA.t2k-w0.5.mod . Average NLL-Simple NULL score: -16.987700 /projects/compbio/experiments/models.97/pdb/1n/1ncx/nostruct-align/1ncx.t2k-w0.5.mod(21): Reading nostruct-align/1ncx.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc46-7957/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1n/1ncx/nostruct-align/1ncx.t2k-w0.5.mod (nostruct-align/1ncx.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1n/1ncx/nostruct-align/1ncx.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.225677 /projects/compbio/experiments/models.97/pdb/1m/1m6pA/nostruct-align/1m6pA.t2k-w0.5.mod(22): Reading nostruct-align/1m6pA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc85-10965/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1m/1m6pA/nostruct-align/1m6pA.t2k-w0.5.mod (nostruct-align/1m6pA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1m/1m6pA/nostruct-align/1m6pA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.662699 /projects/compbio/experiments/models.97/pdb/1b/1b67A/nostruct-align/1b67A.t2k-w0.5.mod(21): Reading nostruct-align/1b67A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc28-12200/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1b/1b67A/nostruct-align/1b67A.t2k-w0.5.mod (nostruct-align/1b67A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1b/1b67A/nostruct-align/1b67A.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.334684 /projects/compbio/experiments/models.97/pdb/1d/1dvbA/nostruct-align/1dvbA.t2k-w0.5.mod(21): Reading nostruct-align/1dvbA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc03-2433/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1d/1dvbA/nostruct-align/1dvbA.t2k-w0.5.mod (nostruct-align/1dvbA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1d/1dvbA/nostruct-align/1dvbA.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.372671 /projects/compbio/experiments/models.97/pdb/1h/1hulA/nostruct-align/1hulA.t2k-w0.5.mod(22): Reading nostruct-align/1hulA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc36-14060/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1h/1hulA/nostruct-align/1hulA.t2k-w0.5.mod (nostruct-align/1hulA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1h/1hulA/nostruct-align/1hulA.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.561678 /projects/compbio/experiments/models.97/pdb/1k/1kxpD/nostruct-align/1kxpD.t2k-w0.5.mod(22): Reading nostruct-align/1kxpD.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc68-30579/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1k/1kxpD/nostruct-align/1kxpD.t2k-w0.5.mod (nostruct-align/1kxpD.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1k/1kxpD/nostruct-align/1kxpD.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.921682 /projects/compbio/experiments/models.97/pdb/1g/1g0hA/nostruct-align/1g0hA.t2k-w0.5.mod(21): Reading nostruct-align/1g0hA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc73-22437/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1g/1g0hA/nostruct-align/1g0hA.t2k-w0.5.mod (nostruct-align/1g0hA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1g/1g0hA/nostruct-align/1g0hA.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.022686 /projects/compbio/experiments/models.97/pdb/1i/1iqrA/nostruct-align/1iqrA.t2k-w0.5.mod(22): Reading nostruct-align/1iqrA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc64-19948/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1i/1iqrA/nostruct-align/1iqrA.t2k-w0.5.mod (nostruct-align/1iqrA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1i/1iqrA/nostruct-align/1iqrA.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.563675 /projects/compbio/experiments/models.97/pdb/1d/1dp7P/nostruct-align/1dp7P.t2k-w0.5.mod(22): Reading nostruct-align/1dp7P.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc77-23053/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1d/1dp7P/nostruct-align/1dp7P.t2k-w0.5.mod (nostruct-align/1dp7P.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1d/1dp7P/nostruct-align/1dp7P.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.648672 /projects/compbio/experiments/models.97/pdb/1f/1fnnA/nostruct-align/1fnnA.t2k-w0.5.mod(22): Reading nostruct-align/1fnnA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc65-27897/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1fnnA/nostruct-align/1fnnA.t2k-w0.5.mod (nostruct-align/1fnnA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1fnnA/nostruct-align/1fnnA.t2k-w0.5.mod . Average NLL-Simple NULL score: -24.099691 /projects/compbio/experiments/models.97/pdb/1j/1jo6A/nostruct-align/1jo6A.t2k-w0.5.mod(22): Reading nostruct-align/1jo6A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc73-5579/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1j/1jo6A/nostruct-align/1jo6A.t2k-w0.5.mod (nostruct-align/1jo6A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1j/1jo6A/nostruct-align/1jo6A.t2k-w0.5.mod . Average NLL-Simple NULL score: -16.286699 /projects/compbio/experiments/models.97/pdb/1j/1jmxA/nostruct-align/1jmxA.t2k-w0.5.mod(22): Reading nostruct-align/1jmxA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc60-22060/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1j/1jmxA/nostruct-align/1jmxA.t2k-w0.5.mod (nostruct-align/1jmxA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1j/1jmxA/nostruct-align/1jmxA.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.249672 /projects/compbio/experiments/models.97/pdb/1j/1jmxB/nostruct-align/1jmxB.t2k-w0.5.mod(22): Reading nostruct-align/1jmxB.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc61-15109/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1j/1jmxB/nostruct-align/1jmxB.t2k-w0.5.mod (nostruct-align/1jmxB.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1j/1jmxB/nostruct-align/1jmxB.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.030699 /projects/compbio/experiments/models.97/pdb/1g/1gl2A/nostruct-align/1gl2A.t2k-w0.5.mod(22): Reading nostruct-align/1gl2A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc49-15783/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1g/1gl2A/nostruct-align/1gl2A.t2k-w0.5.mod (nostruct-align/1gl2A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1g/1gl2A/nostruct-align/1gl2A.t2k-w0.5.mod . Average NLL-Simple NULL score: -16.870672 /projects/compbio/experiments/models.97/pdb/1a/1a16/nostruct-align/1a16.t2k-w0.5.mod(22): Reading nostruct-align/1a16.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc44-8634/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1a/1a16/nostruct-align/1a16.t2k-w0.5.mod (nostruct-align/1a16.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1a/1a16/nostruct-align/1a16.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.599684 /projects/compbio/experiments/models.97/pdb/1g/1gl2B/nostruct-align/1gl2B.t2k-w0.5.mod(22): Reading nostruct-align/1gl2B.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc42-2816/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1g/1gl2B/nostruct-align/1gl2B.t2k-w0.5.mod (nostruct-align/1gl2B.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1g/1gl2B/nostruct-align/1gl2B.t2k-w0.5.mod . Average NLL-Simple NULL score: -16.664694 /projects/compbio/experiments/models.97/pdb/1g/1gl2C/nostruct-align/1gl2C.t2k-w0.5.mod(22): Reading nostruct-align/1gl2C.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc75-19205/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1g/1gl2C/nostruct-align/1gl2C.t2k-w0.5.mod (nostruct-align/1gl2C.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1g/1gl2C/nostruct-align/1gl2C.t2k-w0.5.mod . Average NLL-Simple NULL score: -16.683699 /projects/compbio/experiments/models.97/pdb/1g/1g7rA/nostruct-align/1g7rA.t2k-w0.5.mod(22): Reading nostruct-align/1g7rA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc11-31259/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1g/1g7rA/nostruct-align/1g7rA.t2k-w0.5.mod (nostruct-align/1g7rA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1g/1g7rA/nostruct-align/1g7rA.t2k-w0.5.mod . Average NLL-Simple NULL score: -22.845688 /projects/compbio/experiments/models.97/pdb/1e/1eyrA/nostruct-align/1eyrA.t2k-w0.5.mod(22): Reading nostruct-align/1eyrA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc50-684/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1eyrA/nostruct-align/1eyrA.t2k-w0.5.mod (nostruct-align/1eyrA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1eyrA/nostruct-align/1eyrA.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.291693 /projects/compbio/experiments/models.97/pdb/1a/1a17/nostruct-align/1a17.t2k-w0.5.mod(21): Reading nostruct-align/1a17.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc09-20004/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1a/1a17/nostruct-align/1a17.t2k-w0.5.mod (nostruct-align/1a17.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1a/1a17/nostruct-align/1a17.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.101671 /projects/compbio/experiments/models.97/pdb/1g/1gl2D/nostruct-align/1gl2D.t2k-w0.5.mod(22): Reading nostruct-align/1gl2D.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc62-8786/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1g/1gl2D/nostruct-align/1gl2D.t2k-w0.5.mod (nostruct-align/1gl2D.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1g/1gl2D/nostruct-align/1gl2D.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.029692 /projects/compbio/experiments/models.97/pdb/1j/1jmxG/nostruct-align/1jmxG.t2k-w0.5.mod(22): Reading nostruct-align/1jmxG.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc58-9333/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1j/1jmxG/nostruct-align/1jmxG.t2k-w0.5.mod (nostruct-align/1jmxG.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1j/1jmxG/nostruct-align/1jmxG.t2k-w0.5.mod . Average NLL-Simple NULL score: -16.682684 /projects/compbio/experiments/models.97/pdb/1n/1ndh/nostruct-align/1ndh.t2k-w0.5.mod(21): Reading nostruct-align/1ndh.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc72-15118/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1n/1ndh/nostruct-align/1ndh.t2k-w0.5.mod (nostruct-align/1ndh.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1n/1ndh/nostruct-align/1ndh.t2k-w0.5.mod . Average NLL-Simple NULL score: -22.597672 /projects/compbio/experiments/models.97/pdb/1h/1hh8A/nostruct-align/1hh8A.t2k-w0.5.mod(22): Reading nostruct-align/1hh8A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc32-17806/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1h/1hh8A/nostruct-align/1hh8A.t2k-w0.5.mod (nostruct-align/1hh8A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1h/1hh8A/nostruct-align/1hh8A.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.603689 /projects/compbio/experiments/models.97/pdb/1f/1fuxA/nostruct-align/1fuxA.t2k-w0.5.mod(22): Reading nostruct-align/1fuxA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc47-21578/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1fuxA/nostruct-align/1fuxA.t2k-w0.5.mod (nostruct-align/1fuxA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1fuxA/nostruct-align/1fuxA.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.899687 /projects/compbio/experiments/models.97/pdb/1n/1ndk/nostruct-align/1ndk.t2k-w0.5.mod(21): Reading nostruct-align/1ndk.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc16-32536/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1n/1ndk/nostruct-align/1ndk.t2k-w0.5.mod (nostruct-align/1ndk.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1n/1ndk/nostruct-align/1ndk.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.634680 /projects/compbio/experiments/models.97/pdb/1e/1ee4A/nostruct-align/1ee4A.t2k-w0.5.mod(22): Reading nostruct-align/1ee4A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc18-7609/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1ee4A/nostruct-align/1ee4A.t2k-w0.5.mod (nostruct-align/1ee4A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1ee4A/nostruct-align/1ee4A.t2k-w0.5.mod . Average NLL-Simple NULL score: -22.940687 /projects/compbio/experiments/models.97/pdb/1e/1e0tA/nostruct-align/1e0tA.t2k-w0.5.mod(21): Reading nostruct-align/1e0tA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc34-5147/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1e0tA/nostruct-align/1e0tA.t2k-w0.5.mod (nostruct-align/1e0tA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1e0tA/nostruct-align/1e0tA.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.064699 /projects/compbio/experiments/models.97/pdb/1u/1une/nostruct-align/1une.t2k-w0.5.mod(21): Reading nostruct-align/1une.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc49-10734/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1u/1une/nostruct-align/1une.t2k-w0.5.mod (nostruct-align/1une.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1u/1une/nostruct-align/1une.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.404697 /projects/compbio/experiments/models.97/pdb/1i/1i7gA/nostruct-align/1i7gA.t2k-w0.5.mod(22): Reading nostruct-align/1i7gA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc74-19188/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1i/1i7gA/nostruct-align/1i7gA.t2k-w0.5.mod (nostruct-align/1i7gA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1i/1i7gA/nostruct-align/1i7gA.t2k-w0.5.mod . Average NLL-Simple NULL score: -23.015690 /projects/compbio/experiments/models.97/pdb/1a/1a0i/nostruct-align/1a0i.t2k-w0.5.mod(22): Reading nostruct-align/1a0i.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc33-16074/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1a/1a0i/nostruct-align/1a0i.t2k-w0.5.mod (nostruct-align/1a0i.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1a/1a0i/nostruct-align/1a0i.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.882687 /projects/compbio/experiments/models.97/pdb/1b/1b68A/nostruct-align/1b68A.t2k-w0.5.mod(21): Reading nostruct-align/1b68A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc38-29932/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1b/1b68A/nostruct-align/1b68A.t2k-w0.5.mod (nostruct-align/1b68A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1b/1b68A/nostruct-align/1b68A.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.652674 /projects/compbio/experiments/models.97/pdb/1h/1humA/nostruct-align/1humA.t2k-w0.5.mod(21): Reading nostruct-align/1humA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc27-15748/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1h/1humA/nostruct-align/1humA.t2k-w0.5.mod (nostruct-align/1humA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1h/1humA/nostruct-align/1humA.t2k-w0.5.mod . Average NLL-Simple NULL score: -16.585699 /projects/compbio/experiments/models.97/pdb/1k/1kxqE/nostruct-align/1kxqE.t2k-w0.5.mod(22): Reading nostruct-align/1kxqE.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc49-29184/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1k/1kxqE/nostruct-align/1kxqE.t2k-w0.5.mod (nostruct-align/1kxqE.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1k/1kxqE/nostruct-align/1kxqE.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.731672 /projects/compbio/experiments/models.97/pdb/2c/2cab/nostruct-align/2cab.t2k-w0.5.mod(21): Reading nostruct-align/2cab.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc60-2973/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/2c/2cab/nostruct-align/2cab.t2k-w0.5.mod (nostruct-align/2cab.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/2c/2cab/nostruct-align/2cab.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.648672 /projects/compbio/experiments/models.97/pdb/1e/1eriA/nostruct-align/1eriA.t2k-w0.5.mod(21): Reading nostruct-align/1eriA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc47-579/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1eriA/nostruct-align/1eriA.t2k-w0.5.mod (nostruct-align/1eriA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1eriA/nostruct-align/1eriA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.150696 /projects/compbio/experiments/models.97/pdb/1a/1a0p/nostruct-align/1a0p.t2k-w0.5.mod(21): Reading nostruct-align/1a0p.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc15-18367/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1a/1a0p/nostruct-align/1a0p.t2k-w0.5.mod (nostruct-align/1a0p.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1a/1a0p/nostruct-align/1a0p.t2k-w0.5.mod . Average NLL-Simple NULL score: -30.873672 /projects/compbio/experiments/models.97/pdb/2c/2cae/nostruct-align/2cae.t2k-w0.5.mod(22): Reading nostruct-align/2cae.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc51-31300/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/2c/2cae/nostruct-align/2cae.t2k-w0.5.mod (nostruct-align/2cae.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/2c/2cae/nostruct-align/2cae.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.715687 /projects/compbio/experiments/models.97/pdb/1b/1boeA/nostruct-align/1boeA.t2k-w0.5.mod(21): Reading nostruct-align/1boeA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc10-25537/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1b/1boeA/nostruct-align/1boeA.t2k-w0.5.mod (nostruct-align/1boeA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1b/1boeA/nostruct-align/1boeA.t2k-w0.5.mod . Average NLL-Simple NULL score: -16.090672 /projects/compbio/experiments/models.97/pdb/1f/1fnoA/nostruct-align/1fnoA.t2k-w0.5.mod(22): Reading nostruct-align/1fnoA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc42-25526/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1fnoA/nostruct-align/1fnoA.t2k-w0.5.mod (nostruct-align/1fnoA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1fnoA/nostruct-align/1fnoA.t2k-w0.5.mod . Average NLL-Simple NULL score: -23.245674 /projects/compbio/experiments/models.97/pdb/1g/1gjuA/nostruct-align/1gjuA.t2k-w0.5.mod(21): Reading nostruct-align/1gjuA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc79-13699/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1g/1gjuA/nostruct-align/1gjuA.t2k-w0.5.mod (nostruct-align/1gjuA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1g/1gjuA/nostruct-align/1gjuA.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.625692 /projects/compbio/experiments/models.97/pdb/1a/1a26/nostruct-align/1a26.t2k-w0.5.mod(21): Reading nostruct-align/1a26.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc67-21808/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1a/1a26/nostruct-align/1a26.t2k-w0.5.mod (nostruct-align/1a26.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1a/1a26/nostruct-align/1a26.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.424677 /projects/compbio/experiments/models.97/pdb/1a/1a27/nostruct-align/1a27.t2k-w0.5.mod(22): Reading nostruct-align/1a27.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc54-11921/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1a/1a27/nostruct-align/1a27.t2k-w0.5.mod (nostruct-align/1a27.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1a/1a27/nostruct-align/1a27.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.563671 /projects/compbio/experiments/models.97/pdb/1g/1g7sA/nostruct-align/1g7sA.t2k-w0.5.mod(21): Reading nostruct-align/1g7sA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc80-26028/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1g/1g7sA/nostruct-align/1g7sA.t2k-w0.5.mod (nostruct-align/1g7sA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1g/1g7sA/nostruct-align/1g7sA.t2k-w0.5.mod . Average NLL-Simple NULL score: -22.537689 /projects/compbio/experiments/models.97/pdb/1d/1d4oA/nostruct-align/1d4oA.t2k-w0.5.mod(22): Reading nostruct-align/1d4oA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc42-23271/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1d/1d4oA/nostruct-align/1d4oA.t2k-w0.5.mod (nostruct-align/1d4oA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1d/1d4oA/nostruct-align/1d4oA.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.088678 /projects/compbio/experiments/models.97/pdb/1b/1bvoA/nostruct-align/1bvoA.t2k-w0.5.mod(22): Reading nostruct-align/1bvoA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc72-31877/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1b/1bvoA/nostruct-align/1bvoA.t2k-w0.5.mod (nostruct-align/1bvoA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1b/1bvoA/nostruct-align/1bvoA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.664698 /projects/compbio/experiments/models.97/pdb/7a/7a3hA/nostruct-align/7a3hA.t2k-w0.5.mod(22): Reading nostruct-align/7a3hA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc48-2910/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/7a/7a3hA/nostruct-align/7a3hA.t2k-w0.5.mod (nostruct-align/7a3hA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/7a/7a3hA/nostruct-align/7a3hA.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.018684 /projects/compbio/experiments/models.97/pdb/1l/1lfdA/nostruct-align/1lfdA.t2k-w0.5.mod(22): Reading nostruct-align/1lfdA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc58-7406/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1l/1lfdA/nostruct-align/1lfdA.t2k-w0.5.mod (nostruct-align/1lfdA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1l/1lfdA/nostruct-align/1lfdA.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.417688 /projects/compbio/experiments/models.97/pdb/1c/1cruA/nostruct-align/1cruA.t2k-w0.5.mod(22): Reading nostruct-align/1cruA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc49-32671/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1c/1cruA/nostruct-align/1cruA.t2k-w0.5.mod (nostruct-align/1cruA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1c/1cruA/nostruct-align/1cruA.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.952694 /projects/compbio/experiments/models.97/pdb/1t/1tf6A/nostruct-align/1tf6A.t2k-w0.5.mod(21): Reading nostruct-align/1tf6A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc22-30387/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1t/1tf6A/nostruct-align/1tf6A.t2k-w0.5.mod (nostruct-align/1tf6A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1t/1tf6A/nostruct-align/1tf6A.t2k-w0.5.mod . Average NLL-Simple NULL score: -27.372679 /projects/compbio/experiments/models.97/pdb/2c/2cas/nostruct-align/2cas.t2k-w0.5.mod(21): Reading nostruct-align/2cas.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc37-20437/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/2c/2cas/nostruct-align/2cas.t2k-w0.5.mod (nostruct-align/2cas.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/2c/2cas/nostruct-align/2cas.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.259691 /projects/compbio/experiments/models.97/pdb/1b/1bb1A/nostruct-align/1bb1A.t2k-w0.5.mod(21): Reading nostruct-align/1bb1A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc77-7153/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1b/1bb1A/nostruct-align/1bb1A.t2k-w0.5.mod (nostruct-align/1bb1A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1b/1bb1A/nostruct-align/1bb1A.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.598692 /projects/compbio/experiments/models.97/pdb/1k/1kqhA/nostruct-align/1kqhA.t2k-w0.5.mod(22): Reading nostruct-align/1kqhA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc62-24939/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1k/1kqhA/nostruct-align/1kqhA.t2k-w0.5.mod (nostruct-align/1kqhA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1k/1kqhA/nostruct-align/1kqhA.t2k-w0.5.mod . Average NLL-Simple NULL score: -15.747698 /projects/compbio/experiments/models.97/pdb/1b/1bb1B/nostruct-align/1bb1B.t2k-w0.5.mod(22): Reading nostruct-align/1bb1B.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc77-30500/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1b/1bb1B/nostruct-align/1bb1B.t2k-w0.5.mod (nostruct-align/1bb1B.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1b/1bb1B/nostruct-align/1bb1B.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.567677 /projects/compbio/experiments/models.97/pdb/1q/1qatB/nostruct-align/1qatB.t2k-w0.5.mod(21): Reading nostruct-align/1qatB.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc51-6614/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1q/1qatB/nostruct-align/1qatB.t2k-w0.5.mod (nostruct-align/1qatB.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1q/1qatB/nostruct-align/1qatB.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.747675 /projects/compbio/experiments/models.97/pdb/1b/1bb1C/nostruct-align/1bb1C.t2k-w0.5.mod(22): Reading nostruct-align/1bb1C.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc23-18907/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1b/1bb1C/nostruct-align/1bb1C.t2k-w0.5.mod (nostruct-align/1bb1C.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1b/1bb1C/nostruct-align/1bb1C.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.266678 /projects/compbio/experiments/models.97/pdb/1n/1neq/nostruct-align/1neq.t2k-w0.5.mod(21): Reading nostruct-align/1neq.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc82-4320/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1n/1neq/nostruct-align/1neq.t2k-w0.5.mod (nostruct-align/1neq.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1n/1neq/nostruct-align/1neq.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.432680 /projects/compbio/experiments/models.97/pdb/1n/1ng1/nostruct-align/1ng1.t2k-w0.5.mod(21): Reading nostruct-align/1ng1.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc66-6992/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1n/1ng1/nostruct-align/1ng1.t2k-w0.5.mod (nostruct-align/1ng1.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1n/1ng1/nostruct-align/1ng1.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.138691 /projects/compbio/experiments/models.97/pdb/1a/1a1d/nostruct-align/1a1d.t2k-w0.5.mod(21): Reading nostruct-align/1a1d.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc23-16014/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1a/1a1d/nostruct-align/1a1d.t2k-w0.5.mod (nostruct-align/1a1d.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1a/1a1d/nostruct-align/1a1d.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.063683 /projects/compbio/experiments/models.97/pdb/1u/1uok/nostruct-align/1uok.t2k-w0.5.mod(21): Reading nostruct-align/1uok.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc28-12273/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1u/1uok/nostruct-align/1uok.t2k-w0.5.mod (nostruct-align/1uok.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1u/1uok/nostruct-align/1uok.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.913679 /projects/compbio/experiments/models.97/pdb/1n/1neu/nostruct-align/1neu.t2k-w0.5.mod(21): Reading nostruct-align/1neu.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc25-25337/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1n/1neu/nostruct-align/1neu.t2k-w0.5.mod (nostruct-align/1neu.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1n/1neu/nostruct-align/1neu.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.487680 /projects/compbio/experiments/models.97/pdb/1i/1i7hA/nostruct-align/1i7hA.t2k-w0.5.mod(22): Reading nostruct-align/1i7hA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc75-10211/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1i/1i7hA/nostruct-align/1i7hA.t2k-w0.5.mod (nostruct-align/1i7hA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1i/1i7hA/nostruct-align/1i7hA.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.880684 /projects/compbio/experiments/models.97/pdb/1n/1new/nostruct-align/1new.t2k-w0.5.mod(21): Reading nostruct-align/1new.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc30-19578/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1n/1new/nostruct-align/1new.t2k-w0.5.mod (nostruct-align/1new.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1n/1new/nostruct-align/1new.t2k-w0.5.mod . Average NLL-Simple NULL score: -16.537695 /projects/compbio/experiments/models.97/pdb/1k/1kxrA/nostruct-align/1kxrA.t2k-w0.5.mod(22): Reading nostruct-align/1kxrA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc57-22220/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1k/1kxrA/nostruct-align/1kxrA.t2k-w0.5.mod (nostruct-align/1kxrA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1k/1kxrA/nostruct-align/1kxrA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.148697 /projects/compbio/experiments/models.97/pdb/1b/1bvp1/nostruct-align/1bvp1.t2k-w0.5.mod(21): Reading nostruct-align/1bvp1.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc45-26968/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1b/1bvp1/nostruct-align/1bvp1.t2k-w0.5.mod (nostruct-align/1bvp1.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1b/1bvp1/nostruct-align/1bvp1.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.624685 /projects/compbio/experiments/models.97/pdb/2c/2cba/nostruct-align/2cba.t2k-w0.5.mod(21): Reading nostruct-align/2cba.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc59-28573/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/2c/2cba/nostruct-align/2cba.t2k-w0.5.mod (nostruct-align/2cba.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/2c/2cba/nostruct-align/2cba.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.831697 /projects/compbio/experiments/models.97/pdb/1k/1kbvA/nostruct-align/1kbvA.t2k-w0.5.mod(22): Reading nostruct-align/1kbvA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc68-2909/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1k/1kbvA/nostruct-align/1kbvA.t2k-w0.5.mod (nostruct-align/1kbvA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1k/1kbvA/nostruct-align/1kbvA.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.394682 /projects/compbio/experiments/models.97/pdb/1r/1r2aA/nostruct-align/1r2aA.t2k-w0.5.mod(21): Reading nostruct-align/1r2aA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc55-15598/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1r/1r2aA/nostruct-align/1r2aA.t2k-w0.5.mod (nostruct-align/1r2aA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1r/1r2aA/nostruct-align/1r2aA.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.132687 /projects/compbio/experiments/models.97/pdb/1e/1erjA/nostruct-align/1erjA.t2k-w0.5.mod(21): Reading nostruct-align/1erjA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc73-18818/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1erjA/nostruct-align/1erjA.t2k-w0.5.mod (nostruct-align/1erjA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1erjA/nostruct-align/1erjA.t2k-w0.5.mod . Average NLL-Simple NULL score: -22.369686 /projects/compbio/experiments/models.97/pdb/1i/1is2A/nostruct-align/1is2A.t2k-w0.5.mod(22): Reading nostruct-align/1is2A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc67-13734/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1i/1is2A/nostruct-align/1is2A.t2k-w0.5.mod (nostruct-align/1is2A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1i/1is2A/nostruct-align/1is2A.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.237686 /projects/compbio/experiments/models.97/pdb/2c/2cbf/nostruct-align/2cbf.t2k-w0.5.mod(22): Reading nostruct-align/2cbf.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc25-15804/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/2c/2cbf/nostruct-align/2cbf.t2k-w0.5.mod (nostruct-align/2cbf.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/2c/2cbf/nostruct-align/2cbf.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.442699 /projects/compbio/experiments/models.97/pdb/1u/1uox/nostruct-align/1uox.t2k-w0.5.mod(22): Reading nostruct-align/1uox.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc85-13265/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1u/1uox/nostruct-align/1uox.t2k-w0.5.mod (nostruct-align/1uox.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1u/1uox/nostruct-align/1uox.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.928671 /projects/compbio/experiments/models.97/pdb/1a/1a1s/nostruct-align/1a1s.t2k-w0.5.mod(21): Reading nostruct-align/1a1s.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc19-30754/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1a/1a1s/nostruct-align/1a1s.t2k-w0.5.mod (nostruct-align/1a1s.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1a/1a1s/nostruct-align/1a1s.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.537691 /projects/compbio/experiments/models.97/pdb/1n/1nfa/nostruct-align/1nfa.t2k-w0.5.mod(21): Reading nostruct-align/1nfa.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc71-8781/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1n/1nfa/nostruct-align/1nfa.t2k-w0.5.mod (nostruct-align/1nfa.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1n/1nfa/nostruct-align/1nfa.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.613695 /projects/compbio/experiments/models.97/pdb/1a/1a32/nostruct-align/1a32.t2k-w0.5.mod(22): Reading nostruct-align/1a32.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc45-3837/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1a/1a32/nostruct-align/1a32.t2k-w0.5.mod (nostruct-align/1a32.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1a/1a32/nostruct-align/1a32.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.755684 /projects/compbio/experiments/models.97/pdb/1j/1jo8A/nostruct-align/1jo8A.t2k-w0.5.mod(22): Reading nostruct-align/1jo8A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc59-23273/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1j/1jo8A/nostruct-align/1jo8A.t2k-w0.5.mod (nostruct-align/1jo8A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1j/1jo8A/nostruct-align/1jo8A.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.022684 /projects/compbio/experiments/models.97/pdb/2c/2cbh/nostruct-align/2cbh.t2k-w0.5.mod(21): Reading nostruct-align/2cbh.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc36-16053/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/2c/2cbh/nostruct-align/2cbh.t2k-w0.5.mod (nostruct-align/2cbh.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/2c/2cbh/nostruct-align/2cbh.t2k-w0.5.mod . Average NLL-Simple NULL score: -16.020683 /projects/compbio/experiments/models.97/pdb/1c/1cklA/nostruct-align/1cklA.t2k-w0.5.mod(21): Reading nostruct-align/1cklA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc21-26427/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1c/1cklA/nostruct-align/1cklA.t2k-w0.5.mod (nostruct-align/1cklA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1c/1cklA/nostruct-align/1cklA.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.688688 /projects/compbio/experiments/models.97/pdb/1g/1gl4A/nostruct-align/1gl4A.t2k-w0.5.mod(22): Reading nostruct-align/1gl4A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc58-2233/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1g/1gl4A/nostruct-align/1gl4A.t2k-w0.5.mod (nostruct-align/1gl4A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1g/1gl4A/nostruct-align/1gl4A.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.741674 /projects/compbio/experiments/models.97/pdb/1c/1cklB/nostruct-align/1cklB.t2k-w0.5.mod(21): Reading nostruct-align/1cklB.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc54-14704/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1c/1cklB/nostruct-align/1cklB.t2k-w0.5.mod (nostruct-align/1cklB.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1c/1cklB/nostruct-align/1cklB.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.414679 /projects/compbio/experiments/models.97/pdb/1a/1a1w/nostruct-align/1a1w.t2k-w0.5.mod(21): Reading nostruct-align/1a1w.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc28-27892/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1a/1a1w/nostruct-align/1a1w.t2k-w0.5.mod (nostruct-align/1a1w.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1a/1a1w/nostruct-align/1a1w.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.551678 /projects/compbio/experiments/models.97/pdb/1g/1gl4B/nostruct-align/1gl4B.t2k-w0.5.mod(22): Reading nostruct-align/1gl4B.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc50-29950/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1g/1gl4B/nostruct-align/1gl4B.t2k-w0.5.mod (nostruct-align/1gl4B.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1g/1gl4B/nostruct-align/1gl4B.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.402699 /projects/compbio/experiments/models.97/pdb/1a/1a1x/nostruct-align/1a1x.t2k-w0.5.mod(22): Reading nostruct-align/1a1x.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc76-19620/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1a/1a1x/nostruct-align/1a1x.t2k-w0.5.mod (nostruct-align/1a1x.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1a/1a1x/nostruct-align/1a1x.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.017698 /projects/compbio/experiments/models.97/pdb/1g/1g7tA/nostruct-align/1g7tA.t2k-w0.5.mod(21): Reading nostruct-align/1g7tA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc28-24866/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1g/1g7tA/nostruct-align/1g7tA.t2k-w0.5.mod (nostruct-align/1g7tA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1g/1g7tA/nostruct-align/1g7tA.t2k-w0.5.mod . Average NLL-Simple NULL score: -22.482670 /projects/compbio/experiments/models.97/pdb/1d/1di0A/nostruct-align/1di0A.t2k-w0.5.mod(21): Reading nostruct-align/1di0A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc30-10713/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1d/1di0A/nostruct-align/1di0A.t2k-w0.5.mod (nostruct-align/1di0A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1d/1di0A/nostruct-align/1di0A.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.169697 /projects/compbio/experiments/models.97/pdb/1a/1a1z/nostruct-align/1a1z.t2k-w0.5.mod(21): Reading nostruct-align/1a1z.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc36-6057/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1a/1a1z/nostruct-align/1a1z.t2k-w0.5.mod (nostruct-align/1a1z.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1a/1a1z/nostruct-align/1a1z.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.669680 /projects/compbio/experiments/models.97/pdb/1s/1shsA/nostruct-align/1shsA.t2k-w0.5.mod(21): Reading nostruct-align/1shsA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc47-14955/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1s/1shsA/nostruct-align/1shsA.t2k-w0.5.mod (nostruct-align/1shsA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1s/1shsA/nostruct-align/1shsA.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.140680 /projects/compbio/experiments/models.97/pdb/1d/1dgrC/nostruct-align/1dgrC.t2k-w0.5.mod(21): Reading nostruct-align/1dgrC.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc27-15364/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1d/1dgrC/nostruct-align/1dgrC.t2k-w0.5.mod (nostruct-align/1dgrC.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1d/1dgrC/nostruct-align/1dgrC.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.673687 /projects/compbio/experiments/models.97/pdb/2c/2cbp/nostruct-align/2cbp.t2k-w0.5.mod(21): Reading nostruct-align/2cbp.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc65-10717/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/2c/2cbp/nostruct-align/2cbp.t2k-w0.5.mod (nostruct-align/2cbp.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/2c/2cbp/nostruct-align/2cbp.t2k-w0.5.mod . Average NLL-Simple NULL score: -16.927691 /projects/compbio/experiments/models.97/pdb/1e/1ee6A/nostruct-align/1ee6A.t2k-w0.5.mod(22): Reading nostruct-align/1ee6A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc53-15696/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1ee6A/nostruct-align/1ee6A.t2k-w0.5.mod (nostruct-align/1ee6A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1ee6A/nostruct-align/1ee6A.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.293695 /projects/compbio/experiments/models.97/pdb/1e/1ecxA/nostruct-align/1ecxA.t2k-w0.5.mod(21): Reading nostruct-align/1ecxA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc64-18962/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1ecxA/nostruct-align/1ecxA.t2k-w0.5.mod (nostruct-align/1ecxA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1ecxA/nostruct-align/1ecxA.t2k-w0.5.mod . Average NLL-Simple NULL score: -25.805674 /projects/compbio/experiments/models.97/pdb/1n/1nfn/nostruct-align/1nfn.t2k-w0.5.mod(21): Reading nostruct-align/1nfn.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc81-670/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1n/1nfn/nostruct-align/1nfn.t2k-w0.5.mod (nostruct-align/1nfn.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1n/1nfn/nostruct-align/1nfn.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.344673 /projects/compbio/experiments/models.97/pdb/1q/1qauA/nostruct-align/1qauA.t2k-w0.5.mod(22): Reading nostruct-align/1qauA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc73-24574/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1q/1qauA/nostruct-align/1qauA.t2k-w0.5.mod (nostruct-align/1qauA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1q/1qauA/nostruct-align/1qauA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.176685 /projects/compbio/experiments/models.97/pdb/1n/1nfp/nostruct-align/1nfp.t2k-w0.5.mod(21): Reading nostruct-align/1nfp.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc57-30302/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1n/1nfp/nostruct-align/1nfp.t2k-w0.5.mod (nostruct-align/1nfp.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1n/1nfp/nostruct-align/1nfp.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.793697 /projects/compbio/experiments/models.97/pdb/1d/1dgrM/nostruct-align/1dgrM.t2k-w0.5.mod(21): Reading nostruct-align/1dgrM.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc58-13601/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1d/1dgrM/nostruct-align/1dgrM.t2k-w0.5.mod (nostruct-align/1dgrM.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1d/1dgrM/nostruct-align/1dgrM.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.425674 /projects/compbio/experiments/models.97/pdb/1d/1dgrN/nostruct-align/1dgrN.t2k-w0.5.mod(21): Reading nostruct-align/1dgrN.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc72-15629/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1d/1dgrN/nostruct-align/1dgrN.t2k-w0.5.mod (nostruct-align/1dgrN.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1d/1dgrN/nostruct-align/1dgrN.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.038681 /projects/compbio/experiments/models.97/pdb/1a/1a8vA/nostruct-align/1a8vA.t2k-w0.5.mod(21): Reading nostruct-align/1a8vA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc61-27316/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1a/1a8vA/nostruct-align/1a8vA.t2k-w0.5.mod (nostruct-align/1a8vA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1a/1a8vA/nostruct-align/1a8vA.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.540695 /projects/compbio/experiments/models.97/pdb/1f/1fggA/nostruct-align/1fggA.t2k-w0.5.mod(21): Reading nostruct-align/1fggA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc17-21664/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1fggA/nostruct-align/1fggA.t2k-w0.5.mod (nostruct-align/1fggA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1fggA/nostruct-align/1fggA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.526697 /projects/compbio/experiments/models.97/pdb/1c/1cdcA/nostruct-align/1cdcA.t2k-w0.5.mod(22): Reading nostruct-align/1cdcA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc87-10542/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1c/1cdcA/nostruct-align/1cdcA.t2k-w0.5.mod (nostruct-align/1cdcA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1c/1cdcA/nostruct-align/1cdcA.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.268673 /projects/compbio/experiments/models.97/pdb/1c/1cdcB/nostruct-align/1cdcB.t2k-w0.5.mod(21): Reading nostruct-align/1cdcB.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc63-22363/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1c/1cdcB/nostruct-align/1cdcB.t2k-w0.5.mod (nostruct-align/1cdcB.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1c/1cdcB/nostruct-align/1cdcB.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.024700 /projects/compbio/experiments/models.97/pdb/1g/1gcmA/nostruct-align/1gcmA.t2k-w0.5.mod(21): Reading nostruct-align/1gcmA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc34-23758/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1g/1gcmA/nostruct-align/1gcmA.t2k-w0.5.mod (nostruct-align/1gcmA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1g/1gcmA/nostruct-align/1gcmA.t2k-w0.5.mod . Average NLL-Simple NULL score: -16.332682 /projects/compbio/experiments/models.97/pdb/1d/1dgrV/nostruct-align/1dgrV.t2k-w0.5.mod(21): Reading nostruct-align/1dgrV.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc43-3056/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1d/1dgrV/nostruct-align/1dgrV.t2k-w0.5.mod (nostruct-align/1dgrV.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1d/1dgrV/nostruct-align/1dgrV.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.038681 /projects/compbio/experiments/models.97/pdb/1d/1dgrW/nostruct-align/1dgrW.t2k-w0.5.mod(21): Reading nostruct-align/1dgrW.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc25-27121/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1d/1dgrW/nostruct-align/1dgrW.t2k-w0.5.mod (nostruct-align/1dgrW.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1d/1dgrW/nostruct-align/1dgrW.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.464672 /projects/compbio/experiments/models.97/pdb/1a/1a41/nostruct-align/1a41.t2k-w0.5.mod(22): Reading nostruct-align/1a41.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc21-15460/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1a/1a41/nostruct-align/1a41.t2k-w0.5.mod (nostruct-align/1a41.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1a/1a41/nostruct-align/1a41.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.303696 /projects/compbio/experiments/models.97/pdb/2t/2tbvA/nostruct-align/2tbvA.t2k-w0.5.mod(21): Reading nostruct-align/2tbvA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc60-28980/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/2t/2tbvA/nostruct-align/2tbvA.t2k-w0.5.mod (nostruct-align/2tbvA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/2t/2tbvA/nostruct-align/2tbvA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.393692 /projects/compbio/experiments/models.97/pdb/1c/1ckmA/nostruct-align/1ckmA.t2k-w0.5.mod(22): Reading nostruct-align/1ckmA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc53-25873/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1c/1ckmA/nostruct-align/1ckmA.t2k-w0.5.mod (nostruct-align/1ckmA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1c/1ckmA/nostruct-align/1ckmA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.337685 /projects/compbio/experiments/models.97/pdb/1a/1a44/nostruct-align/1a44.t2k-w0.5.mod(21): Reading nostruct-align/1a44.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc50-30221/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1a/1a44/nostruct-align/1a44.t2k-w0.5.mod (nostruct-align/1a44.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1a/1a44/nostruct-align/1a44.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.726692 /projects/compbio/experiments/models.97/pdb/1g/1gjwA/nostruct-align/1gjwA.t2k-w0.5.mod(22): Reading nostruct-align/1gjwA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc85-12650/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1g/1gjwA/nostruct-align/1gjwA.t2k-w0.5.mod (nostruct-align/1gjwA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1g/1gjwA/nostruct-align/1gjwA.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.028673 /projects/compbio/experiments/models.97/pdb/1c/1c8kA/nostruct-align/1c8kA.t2k-w0.5.mod(21): Reading nostruct-align/1c8kA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc73-14497/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1c/1c8kA/nostruct-align/1c8kA.t2k-w0.5.mod (nostruct-align/1c8kA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1c/1c8kA/nostruct-align/1c8kA.t2k-w0.5.mod . Average NLL-Simple NULL score: -22.214670 /projects/compbio/experiments/models.97/pdb/1v/1vkxA/nostruct-align/1vkxA.t2k-w0.5.mod(21): Reading nostruct-align/1vkxA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc04-8160/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1v/1vkxA/nostruct-align/1vkxA.t2k-w0.5.mod (nostruct-align/1vkxA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1v/1vkxA/nostruct-align/1vkxA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.805693 /projects/compbio/experiments/models.97/pdb/1d/1di1A/nostruct-align/1di1A.t2k-w0.5.mod(22): Reading nostruct-align/1di1A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc36-29809/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1d/1di1A/nostruct-align/1di1A.t2k-w0.5.mod (nostruct-align/1di1A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1d/1di1A/nostruct-align/1di1A.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.426697 /projects/compbio/experiments/models.97/pdb/1d/1dgsA/nostruct-align/1dgsA.t2k-w0.5.mod(21): Reading nostruct-align/1dgsA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc62-26473/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1d/1dgsA/nostruct-align/1dgsA.t2k-w0.5.mod (nostruct-align/1dgsA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1d/1dgsA/nostruct-align/1dgsA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.991673 /projects/compbio/experiments/models.97/pdb/1a/1a48/nostruct-align/1a48.t2k-w0.5.mod(22): Reading nostruct-align/1a48.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc63-24116/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1a/1a48/nostruct-align/1a48.t2k-w0.5.mod (nostruct-align/1a48.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1a/1a48/nostruct-align/1a48.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.417675 /projects/compbio/experiments/models.97/pdb/1b/1bvqA/nostruct-align/1bvqA.t2k-w0.5.mod(22): Reading nostruct-align/1bvqA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc60-12679/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1b/1bvqA/nostruct-align/1bvqA.t2k-w0.5.mod (nostruct-align/1bvqA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1b/1bvqA/nostruct-align/1bvqA.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.122694 /projects/compbio/experiments/models.97/pdb/2a/2ak3A/nostruct-align/2ak3A.t2k-w0.5.mod(21): Reading nostruct-align/2ak3A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc25-30205/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/2a/2ak3A/nostruct-align/2ak3A.t2k-w0.5.mod (nostruct-align/2ak3A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/2a/2ak3A/nostruct-align/2ak3A.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.605690 /projects/compbio/experiments/models.97/pdb/1f/1fw9A/nostruct-align/1fw9A.t2k-w0.5.mod(22): Reading nostruct-align/1fw9A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc42-25534/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1fw9A/nostruct-align/1fw9A.t2k-w0.5.mod (nostruct-align/1fw9A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1fw9A/nostruct-align/1fw9A.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.308685 /projects/compbio/experiments/models.97/pdb/1a/1adoA/nostruct-align/1adoA.t2k-w0.5.mod(21): Reading nostruct-align/1adoA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc23-24137/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1a/1adoA/nostruct-align/1adoA.t2k-w0.5.mod (nostruct-align/1adoA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1a/1adoA/nostruct-align/1adoA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.241695 /projects/compbio/experiments/models.97/pdb/1h/1h59B/nostruct-align/1h59B.t2k-w0.5.mod(22): Reading nostruct-align/1h59B.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc44-20992/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1h/1h59B/nostruct-align/1h59B.t2k-w0.5.mod (nostruct-align/1h59B.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1h/1h59B/nostruct-align/1h59B.t2k-w0.5.mod . Average NLL-Simple NULL score: -15.920694 /projects/compbio/experiments/models.97/pdb/1e/1e25A/nostruct-align/1e25A.t2k-w0.5.mod(21): Reading nostruct-align/1e25A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc61-20852/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1e25A/nostruct-align/1e25A.t2k-w0.5.mod (nostruct-align/1e25A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1e25A/nostruct-align/1e25A.t2k-w0.5.mod . Average NLL-Simple NULL score: -23.661690 /projects/compbio/experiments/models.97/pdb/1e/1e0wA/nostruct-align/1e0wA.t2k-w0.5.mod(21): Reading nostruct-align/1e0wA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc65-7587/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1e0wA/nostruct-align/1e0wA.t2k-w0.5.mod (nostruct-align/1e0wA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1e0wA/nostruct-align/1e0wA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.271671 /projects/compbio/experiments/models.97/pdb/1c/1ct5A/nostruct-align/1ct5A.t2k-w0.5.mod(22): Reading nostruct-align/1ct5A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc85-9942/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1c/1ct5A/nostruct-align/1ct5A.t2k-w0.5.mod (nostruct-align/1ct5A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1c/1ct5A/nostruct-align/1ct5A.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.644676 /projects/compbio/experiments/models.97/pdb/1q/1qavA/nostruct-align/1qavA.t2k-w0.5.mod(22): Reading nostruct-align/1qavA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc61-27496/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1q/1qavA/nostruct-align/1qavA.t2k-w0.5.mod (nostruct-align/1qavA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1q/1qavA/nostruct-align/1qavA.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.044680 /projects/compbio/experiments/models.97/pdb/2q/2qwc/nostruct-align/2qwc.t2k-w0.5.mod(21): Reading nostruct-align/2qwc.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc19-26739/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/2q/2qwc/nostruct-align/2qwc.t2k-w0.5.mod (nostruct-align/2qwc.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/2q/2qwc/nostruct-align/2qwc.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.699694 /projects/compbio/experiments/models.97/pdb/1n/1ngr/nostruct-align/1ngr.t2k-w0.5.mod(21): Reading nostruct-align/1ngr.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc22-16689/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1n/1ngr/nostruct-align/1ngr.t2k-w0.5.mod (nostruct-align/1ngr.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1n/1ngr/nostruct-align/1ngr.t2k-w0.5.mod . Average NLL-Simple NULL score: -16.937687 /projects/compbio/experiments/models.97/pdb/1a/1a3c/nostruct-align/1a3c.t2k-w0.5.mod(21): Reading nostruct-align/1a3c.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc70-1042/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1a/1a3c/nostruct-align/1a3c.t2k-w0.5.mod (nostruct-align/1a3c.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1a/1a3c/nostruct-align/1a3c.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.309687 /projects/compbio/experiments/models.97/pdb/1c/1crwG/nostruct-align/1crwG.t2k-w0.5.mod(22): Reading nostruct-align/1crwG.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc58-14778/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1c/1crwG/nostruct-align/1crwG.t2k-w0.5.mod (nostruct-align/1crwG.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1c/1crwG/nostruct-align/1crwG.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.250694 /projects/compbio/experiments/models.97/pdb/1a/1am7A/nostruct-align/1am7A.t2k-w0.5.mod(22): Reading nostruct-align/1am7A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc66-2017/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1a/1am7A/nostruct-align/1am7A.t2k-w0.5.mod (nostruct-align/1am7A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1a/1am7A/nostruct-align/1am7A.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.262691 /projects/compbio/experiments/models.97/pdb/1y/1yveI/nostruct-align/1yveI.t2k-w0.5.mod(21): Reading nostruct-align/1yveI.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc27-15676/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1y/1yveI/nostruct-align/1yveI.t2k-w0.5.mod (nostruct-align/1yveI.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1y/1yveI/nostruct-align/1yveI.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.955688 /projects/compbio/experiments/models.97/pdb/1e/1ekbB/nostruct-align/1ekbB.t2k-w0.5.mod(22): Reading nostruct-align/1ekbB.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc32-26264/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1ekbB/nostruct-align/1ekbB.t2k-w0.5.mod (nostruct-align/1ekbB.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1ekbB/nostruct-align/1ekbB.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.340693 /projects/compbio/experiments/models.97/pdb/1y/1yveJ/nostruct-align/1yveJ.t2k-w0.5.mod(21): Reading nostruct-align/1yveJ.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc59-30866/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1y/1yveJ/nostruct-align/1yveJ.t2k-w0.5.mod (nostruct-align/1yveJ.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1y/1yveJ/nostruct-align/1yveJ.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.699694 /projects/compbio/experiments/models.97/pdb/1a/1a3h/nostruct-align/1a3h.t2k-w0.5.mod(21): Reading nostruct-align/1a3h.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc75-8330/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1a/1a3h/nostruct-align/1a3h.t2k-w0.5.mod (nostruct-align/1a3h.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1a/1a3h/nostruct-align/1a3h.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.760679 /projects/compbio/experiments/models.97/pdb/1j/1jfrA/nostruct-align/1jfrA.t2k-w0.5.mod(22): Reading nostruct-align/1jfrA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc65-25979/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1j/1jfrA/nostruct-align/1jfrA.t2k-w0.5.mod (nostruct-align/1jfrA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1j/1jfrA/nostruct-align/1jfrA.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.177679 /projects/compbio/experiments/models.97/pdb/1a/1a3k/nostruct-align/1a3k.t2k-w0.5.mod(21): Reading nostruct-align/1a3k.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc34-6878/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1a/1a3k/nostruct-align/1a3k.t2k-w0.5.mod (nostruct-align/1a3k.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1a/1a3k/nostruct-align/1a3k.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.236671 /projects/compbio/experiments/models.97/pdb/1l/1ltzA/nostruct-align/1ltzA.t2k-w0.5.mod(22): Reading nostruct-align/1ltzA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc55-29519/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1l/1ltzA/nostruct-align/1ltzA.t2k-w0.5.mod (nostruct-align/1ltzA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1l/1ltzA/nostruct-align/1ltzA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.781698 /projects/compbio/experiments/models.97/pdb/1d/1dvfD/nostruct-align/1dvfD.t2k-w0.5.mod(21): Reading nostruct-align/1dvfD.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc31-1024/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1d/1dvfD/nostruct-align/1dvfD.t2k-w0.5.mod (nostruct-align/1dvfD.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1d/1dvfD/nostruct-align/1dvfD.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.700678 /projects/compbio/experiments/models.97/pdb/2v/2viuA/nostruct-align/2viuA.t2k-w0.5.mod(21): Reading nostruct-align/2viuA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc46-10982/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/2v/2viuA/nostruct-align/2viuA.t2k-w0.5.mod (nostruct-align/2viuA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/2v/2viuA/nostruct-align/2viuA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.016701 /projects/compbio/experiments/models.97/pdb/1a/1a3p/nostruct-align/1a3p.t2k-w0.5.mod(22): Reading nostruct-align/1a3p.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc58-5617/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1a/1a3p/nostruct-align/1a3p.t2k-w0.5.mod (nostruct-align/1a3p.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1a/1a3p/nostruct-align/1a3p.t2k-w0.5.mod . Average NLL-Simple NULL score: -15.526694 /projects/compbio/experiments/models.97/pdb/1i/1iqvA/nostruct-align/1iqvA.t2k-w0.5.mod(22): Reading nostruct-align/1iqvA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc75-10306/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1i/1iqvA/nostruct-align/1iqvA.t2k-w0.5.mod (nostruct-align/1iqvA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1i/1iqvA/nostruct-align/1iqvA.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.346680 /projects/compbio/experiments/models.97/pdb/2v/2viuB/nostruct-align/2viuB.t2k-w0.5.mod(21): Reading nostruct-align/2viuB.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc20-20884/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/2v/2viuB/nostruct-align/2viuB.t2k-w0.5.mod (nostruct-align/2viuB.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/2v/2viuB/nostruct-align/2viuB.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.551693 /projects/compbio/experiments/models.97/pdb/1h/1ha2A/nostruct-align/1ha2A.t2k-w0.5.mod(22): Reading nostruct-align/1ha2A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc68-30377/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1h/1ha2A/nostruct-align/1ha2A.t2k-w0.5.mod (nostruct-align/1ha2A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1h/1ha2A/nostruct-align/1ha2A.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.913683 /projects/compbio/experiments/models.97/pdb/1f/1fp0A/nostruct-align/1fp0A.t2k-w0.5.mod(21): Reading nostruct-align/1fp0A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc02-31686/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1fp0A/nostruct-align/1fp0A.t2k-w0.5.mod (nostruct-align/1fp0A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1fp0A/nostruct-align/1fp0A.t2k-w0.5.mod . Average NLL-Simple NULL score: -16.696678 /projects/compbio/experiments/models.97/pdb/1a/1a53/nostruct-align/1a53.t2k-w0.5.mod(22): Reading nostruct-align/1a53.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc65-5508/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1a/1a53/nostruct-align/1a53.t2k-w0.5.mod (nostruct-align/1a53.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1a/1a53/nostruct-align/1a53.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.547691 /projects/compbio/experiments/models.97/pdb/1c/1cknA/nostruct-align/1cknA.t2k-w0.5.mod(21): Reading nostruct-align/1cknA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc68-2082/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1c/1cknA/nostruct-align/1cknA.t2k-w0.5.mod (nostruct-align/1cknA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1c/1cknA/nostruct-align/1cknA.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.170677 /projects/compbio/experiments/models.97/pdb/1g/1g7vA/nostruct-align/1g7vA.t2k-w0.5.mod(22): Reading nostruct-align/1g7vA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc53-785/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1g/1g7vA/nostruct-align/1g7vA.t2k-w0.5.mod (nostruct-align/1g7vA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1g/1g7vA/nostruct-align/1g7vA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.386690 /projects/compbio/experiments/models.97/pdb/1g/1g94A/nostruct-align/1g94A.t2k-w0.5.mod(22): Reading nostruct-align/1g94A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc68-2319/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1g/1g94A/nostruct-align/1g94A.t2k-w0.5.mod (nostruct-align/1g94A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1g/1g94A/nostruct-align/1g94A.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.925692 /projects/compbio/experiments/models.97/pdb/1e/1eyvA/nostruct-align/1eyvA.t2k-w0.5.mod(22): Reading nostruct-align/1eyvA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc11-21835/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1eyvA/nostruct-align/1eyvA.t2k-w0.5.mod (nostruct-align/1eyvA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1eyvA/nostruct-align/1eyvA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.549681 /projects/compbio/experiments/models.97/pdb/1d/1di2A/nostruct-align/1di2A.t2k-w0.5.mod(22): Reading nostruct-align/1di2A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc22-2469/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1d/1di2A/nostruct-align/1di2A.t2k-w0.5.mod (nostruct-align/1di2A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1d/1di2A/nostruct-align/1di2A.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.806688 /projects/compbio/experiments/models.97/pdb/1a/1a58/nostruct-align/1a58.t2k-w0.5.mod(21): Reading nostruct-align/1a58.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc47-27692/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1a/1a58/nostruct-align/1a58.t2k-w0.5.mod (nostruct-align/1a58.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1a/1a58/nostruct-align/1a58.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.227674 /projects/compbio/experiments/models.97/pdb/1a/1a3z/nostruct-align/1a3z.t2k-w0.5.mod(21): Reading nostruct-align/1a3z.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc49-5165/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1a/1a3z/nostruct-align/1a3z.t2k-w0.5.mod (nostruct-align/1a3z.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1a/1a3z/nostruct-align/1a3z.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.309679 /projects/compbio/experiments/models.97/pdb/2h/2hlcA/nostruct-align/2hlcA.t2k-w0.5.mod(21): Reading nostruct-align/2hlcA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc87-22333/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/2h/2hlcA/nostruct-align/2hlcA.t2k-w0.5.mod (nostruct-align/2hlcA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/2h/2hlcA/nostruct-align/2hlcA.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.982687 /projects/compbio/experiments/models.97/pdb/1a/1a59/nostruct-align/1a59.t2k-w0.5.mod(21): Reading nostruct-align/1a59.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc47-26936/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1a/1a59/nostruct-align/1a59.t2k-w0.5.mod (nostruct-align/1a59.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1a/1a59/nostruct-align/1a59.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.955679 /projects/compbio/experiments/models.97/pdb/1l/1l3eA/nostruct-align/1l3eA.t2k-w0.5.mod(22): Reading nostruct-align/1l3eA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc69-6605/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1l/1l3eA/nostruct-align/1l3eA.t2k-w0.5.mod (nostruct-align/1l3eA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1l/1l3eA/nostruct-align/1l3eA.t2k-w0.5.mod . Average NLL-Simple NULL score: -15.749686 /projects/compbio/experiments/models.97/pdb/1e/1ee8A/nostruct-align/1ee8A.t2k-w0.5.mod(22): Reading nostruct-align/1ee8A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc53-15729/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1ee8A/nostruct-align/1ee8A.t2k-w0.5.mod (nostruct-align/1ee8A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1ee8A/nostruct-align/1ee8A.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.895700 /projects/compbio/experiments/models.97/pdb/1c/1crxA/nostruct-align/1crxA.t2k-w0.5.mod(21): Reading nostruct-align/1crxA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc33-2347/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1c/1crxA/nostruct-align/1crxA.t2k-w0.5.mod (nostruct-align/1crxA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1c/1crxA/nostruct-align/1crxA.t2k-w0.5.mod . Average NLL-Simple NULL score: -22.052700 /projects/compbio/experiments/models.97/pdb/1i/1i0aA/nostruct-align/1i0aA.t2k-w0.5.mod(22): Reading nostruct-align/1i0aA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc61-6182/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1i/1i0aA/nostruct-align/1i0aA.t2k-w0.5.mod (nostruct-align/1i0aA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1i/1i0aA/nostruct-align/1i0aA.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.579676 /projects/compbio/experiments/models.97/pdb/1q/1qc5A/nostruct-align/1qc5A.t2k-w0.5.mod(21): Reading nostruct-align/1qc5A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc71-3254/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1q/1qc5A/nostruct-align/1qc5A.t2k-w0.5.mod (nostruct-align/1qc5A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1q/1qc5A/nostruct-align/1qc5A.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.166683 /projects/compbio/experiments/models.97/pdb/1n/1nhp/nostruct-align/1nhp.t2k-w0.5.mod(21): Reading nostruct-align/1nhp.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc44-17015/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1n/1nhp/nostruct-align/1nhp.t2k-w0.5.mod (nostruct-align/1nhp.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1n/1nhp/nostruct-align/1nhp.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.611698 /projects/compbio/experiments/models.97/pdb/1o/1or3A/nostruct-align/1or3A.t2k-w0.5.mod(22): Reading nostruct-align/1or3A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc73-27180/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1o/1or3A/nostruct-align/1or3A.t2k-w0.5.mod (nostruct-align/1or3A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1o/1or3A/nostruct-align/1or3A.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.327684 /projects/compbio/experiments/models.97/pdb/1n/1nhs/nostruct-align/1nhs.t2k-w0.5.mod(22): Reading nostruct-align/1nhs.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc41-15953/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1n/1nhs/nostruct-align/1nhs.t2k-w0.5.mod (nostruct-align/1nhs.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1n/1nhs/nostruct-align/1nhs.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.903679 /projects/compbio/experiments/models.97/pdb/2c/2cdx/nostruct-align/2cdx.t2k-w0.5.mod(21): Reading nostruct-align/2cdx.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc15-3618/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/2c/2cdx/nostruct-align/2cdx.t2k-w0.5.mod (nostruct-align/2cdx.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/2c/2cdx/nostruct-align/2cdx.t2k-w0.5.mod . Average NLL-Simple NULL score: -15.995691 /projects/compbio/experiments/models.97/pdb/1q/1qawF/nostruct-align/1qawF.t2k-w0.5.mod(22): Reading nostruct-align/1qawF.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc62-4002/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1q/1qawF/nostruct-align/1qawF.t2k-w0.5.mod (nostruct-align/1qawF.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1q/1qawF/nostruct-align/1qawF.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.272673 /projects/compbio/experiments/models.97/pdb/1e/1e8aA/nostruct-align/1e8aA.t2k-w0.5.mod(21): Reading nostruct-align/1e8aA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc78-30451/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1e8aA/nostruct-align/1e8aA.t2k-w0.5.mod (nostruct-align/1e8aA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1e8aA/nostruct-align/1e8aA.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.426691 /projects/compbio/experiments/models.97/pdb/1i/1i7kA/nostruct-align/1i7kA.t2k-w0.5.mod(21): Reading nostruct-align/1i7kA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc36-22953/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1i/1i7kA/nostruct-align/1i7kA.t2k-w0.5.mod (nostruct-align/1i7kA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1i/1i7kA/nostruct-align/1i7kA.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.451683 /projects/compbio/experiments/models.97/pdb/1h/1huqA/nostruct-align/1huqA.t2k-w0.5.mod(21): Reading nostruct-align/1huqA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc85-5698/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1h/1huqA/nostruct-align/1huqA.t2k-w0.5.mod (nostruct-align/1huqA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1h/1huqA/nostruct-align/1huqA.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.486687 /projects/compbio/experiments/models.97/pdb/1g/1gcoA/nostruct-align/1gcoA.t2k-w0.5.mod(21): Reading nostruct-align/1gcoA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc12-5737/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1g/1gcoA/nostruct-align/1gcoA.t2k-w0.5.mod (nostruct-align/1gcoA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1g/1gcoA/nostruct-align/1gcoA.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.297672 /projects/compbio/experiments/models.97/pdb/1e/1ermA/nostruct-align/1ermA.t2k-w0.5.mod(22): Reading nostruct-align/1ermA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc20-25799/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1ermA/nostruct-align/1ermA.t2k-w0.5.mod (nostruct-align/1ermA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1ermA/nostruct-align/1ermA.t2k-w0.5.mod . Average NLL-Simple NULL score: -23.922680 /projects/compbio/experiments/models.97/pdb/1h/1ha3A/nostruct-align/1ha3A.t2k-w0.5.mod(21): Reading nostruct-align/1ha3A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc65-7757/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1h/1ha3A/nostruct-align/1ha3A.t2k-w0.5.mod (nostruct-align/1ha3A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1h/1ha3A/nostruct-align/1ha3A.t2k-w0.5.mod . Average NLL-Simple NULL score: -22.607679 /projects/compbio/experiments/models.97/pdb/1f/1fnsA/nostruct-align/1fnsA.t2k-w0.5.mod(22): Reading nostruct-align/1fnsA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc71-2397/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1fnsA/nostruct-align/1fnsA.t2k-w0.5.mod (nostruct-align/1fnsA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1fnsA/nostruct-align/1fnsA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.280689 /projects/compbio/experiments/models.97/pdb/1c/1czaN/nostruct-align/1czaN.t2k-w0.5.mod(22): Reading nostruct-align/1czaN.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc72-32467/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1c/1czaN/nostruct-align/1czaN.t2k-w0.5.mod (nostruct-align/1czaN.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1c/1czaN/nostruct-align/1czaN.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.382685 /projects/compbio/experiments/models.97/pdb/1a/1a62/nostruct-align/1a62.t2k-w0.5.mod(22): Reading nostruct-align/1a62.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc62-6657/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1a/1a62/nostruct-align/1a62.t2k-w0.5.mod (nostruct-align/1a62.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1a/1a62/nostruct-align/1a62.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.651690 /projects/compbio/experiments/models.97/pdb/1f/1fp1D/nostruct-align/1fp1D.t2k-w0.5.mod(22): Reading nostruct-align/1fp1D.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc50-779/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1fp1D/nostruct-align/1fp1D.t2k-w0.5.mod (nostruct-align/1fp1D.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1fp1D/nostruct-align/1fp1D.t2k-w0.5.mod . Average NLL-Simple NULL score: -25.208696 /projects/compbio/experiments/models.97/pdb/1n/1nif/nostruct-align/1nif.t2k-w0.5.mod(21): Reading nostruct-align/1nif.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc14-12045/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1n/1nif/nostruct-align/1nif.t2k-w0.5.mod (nostruct-align/1nif.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1n/1nif/nostruct-align/1nif.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.503679 /projects/compbio/experiments/models.97/pdb/1e/1eywA/nostruct-align/1eywA.t2k-w0.5.mod(22): Reading nostruct-align/1eywA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc33-3816/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1eywA/nostruct-align/1eywA.t2k-w0.5.mod (nostruct-align/1eywA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1eywA/nostruct-align/1eywA.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.709681 /projects/compbio/experiments/models.97/pdb/1d/1dguA/nostruct-align/1dguA.t2k-w0.5.mod(21): Reading nostruct-align/1dguA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc78-14896/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1d/1dguA/nostruct-align/1dguA.t2k-w0.5.mod (nostruct-align/1dguA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1d/1dguA/nostruct-align/1dguA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.380690 /projects/compbio/experiments/models.97/pdb/1a/1a68/nostruct-align/1a68.t2k-w0.5.mod(21): Reading nostruct-align/1a68.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc38-9515/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1a/1a68/nostruct-align/1a68.t2k-w0.5.mod (nostruct-align/1a68.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1a/1a68/nostruct-align/1a68.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.165693 /projects/compbio/experiments/models.97/pdb/1b/1bvsB/nostruct-align/1bvsB.t2k-w0.5.mod(21): Reading nostruct-align/1bvsB.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc12-7596/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1b/1bvsB/nostruct-align/1bvsB.t2k-w0.5.mod (nostruct-align/1bvsB.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1b/1bvsB/nostruct-align/1bvsB.t2k-w0.5.mod . Average NLL-Simple NULL score: -22.533672 /projects/compbio/experiments/models.97/pdb/1e/1ee9A/nostruct-align/1ee9A.t2k-w0.5.mod(21): Reading nostruct-align/1ee9A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc43-11203/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1ee9A/nostruct-align/1ee9A.t2k-w0.5.mod (nostruct-align/1ee9A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1ee9A/nostruct-align/1ee9A.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.530695 /projects/compbio/experiments/models.97/pdb/35/351c/nostruct-align/351c.t2k-w0.5.mod(21): Reading nostruct-align/351c.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc57-5482/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/35/351c/nostruct-align/351c.t2k-w0.5.mod (nostruct-align/351c.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/35/351c/nostruct-align/351c.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.353683 /projects/compbio/experiments/models.97/pdb/1k/1kqlA/nostruct-align/1kqlA.t2k-w0.5.mod(22): Reading nostruct-align/1kqlA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc86-18836/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1k/1kqlA/nostruct-align/1kqlA.t2k-w0.5.mod (nostruct-align/1kqlA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1k/1kqlA/nostruct-align/1kqlA.t2k-w0.5.mod . Average NLL-Simple NULL score: -16.865698 /projects/compbio/experiments/models.97/pdb/1q/1qaxA/nostruct-align/1qaxA.t2k-w0.5.mod(21): Reading nostruct-align/1qaxA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc06-17381/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1q/1qaxA/nostruct-align/1qaxA.t2k-w0.5.mod (nostruct-align/1qaxA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1q/1qaxA/nostruct-align/1qaxA.t2k-w0.5.mod . Average NLL-Simple NULL score: -22.250692 /projects/compbio/experiments/models.97/pdb/1u/1uaaA/nostruct-align/1uaaA.t2k-w0.5.mod(21): Reading nostruct-align/1uaaA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc98-14223/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1u/1uaaA/nostruct-align/1uaaA.t2k-w0.5.mod (nostruct-align/1uaaA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1u/1uaaA/nostruct-align/1uaaA.t2k-w0.5.mod . Average NLL-Simple NULL score: -22.333693 /projects/compbio/experiments/models.97/pdb/1u/1ush/nostruct-align/1ush.t2k-w0.5.mod(22): Reading nostruct-align/1ush.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc62-31553/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1u/1ush/nostruct-align/1ush.t2k-w0.5.mod (nostruct-align/1ush.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1u/1ush/nostruct-align/1ush.t2k-w0.5.mod . Average NLL-Simple NULL score: -23.323671 /projects/compbio/experiments/models.97/pdb/1a/1am9A/nostruct-align/1am9A.t2k-w0.5.mod(22): Reading nostruct-align/1am9A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc73-25197/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1a/1am9A/nostruct-align/1am9A.t2k-w0.5.mod (nostruct-align/1am9A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1a/1am9A/nostruct-align/1am9A.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.341690 /projects/compbio/experiments/models.97/pdb/1e/1e8bA/nostruct-align/1e8bA.t2k-w0.5.mod(21): Reading nostruct-align/1e8bA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc23-26439/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1e8bA/nostruct-align/1e8bA.t2k-w0.5.mod (nostruct-align/1e8bA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1e8bA/nostruct-align/1e8bA.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.423687 /projects/compbio/experiments/models.97/pdb/1g/1gylA/nostruct-align/1gylA.t2k-w0.5.mod(21): Reading nostruct-align/1gylA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc06-17374/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1g/1gylA/nostruct-align/1gylA.t2k-w0.5.mod (nostruct-align/1gylA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1g/1gylA/nostruct-align/1gylA.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.204693 /projects/compbio/experiments/models.97/pdb/1f/1fgjA/nostruct-align/1fgjA.t2k-w0.5.mod(21): Reading nostruct-align/1fgjA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc47-30075/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1fgjA/nostruct-align/1fgjA.t2k-w0.5.mod (nostruct-align/1fgjA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1fgjA/nostruct-align/1fgjA.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.448673 /projects/compbio/experiments/models.97/pdb/1a/1a5j/nostruct-align/1a5j.t2k-w0.5.mod(21): Reading nostruct-align/1a5j.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc26-17952/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1a/1a5j/nostruct-align/1a5j.t2k-w0.5.mod (nostruct-align/1a5j.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1a/1a5j/nostruct-align/1a5j.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.672689 /projects/compbio/experiments/models.97/pdb/1j/1jh2A/nostruct-align/1jh2A.t2k-w0.5.mod(22): Reading nostruct-align/1jh2A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc73-24062/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1j/1jh2A/nostruct-align/1jh2A.t2k-w0.5.mod (nostruct-align/1jh2A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1j/1jh2A/nostruct-align/1jh2A.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.612673 /projects/compbio/experiments/models.97/pdb/1k/1kxvC/nostruct-align/1kxvC.t2k-w0.5.mod(22): Reading nostruct-align/1kxvC.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc48-12525/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1k/1kxvC/nostruct-align/1kxvC.t2k-w0.5.mod (nostruct-align/1kxvC.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1k/1kxvC/nostruct-align/1kxvC.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.528690 /projects/compbio/experiments/models.97/pdb/1h/1hurA/nostruct-align/1hurA.t2k-w0.5.mod(21): Reading nostruct-align/1hurA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc08-18567/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1h/1hurA/nostruct-align/1hurA.t2k-w0.5.mod (nostruct-align/1hurA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1h/1hurA/nostruct-align/1hurA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.241697 /projects/compbio/experiments/models.97/pdb/1g/1gcpA/nostruct-align/1gcpA.t2k-w0.5.mod(21): Reading nostruct-align/1gcpA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc47-5912/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1g/1gcpA/nostruct-align/1gcpA.t2k-w0.5.mod (nostruct-align/1gcpA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1g/1gcpA/nostruct-align/1gcpA.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.980677 /projects/compbio/experiments/models.97/pdb/1c/1c1dA/nostruct-align/1c1dA.t2k-w0.5.mod(22): Reading nostruct-align/1c1dA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc38-24429/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1c/1c1dA/nostruct-align/1c1dA.t2k-w0.5.mod (nostruct-align/1c1dA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1c/1c1dA/nostruct-align/1c1dA.t2k-w0.5.mod . Average NLL-Simple NULL score: -22.551676 /projects/compbio/experiments/models.97/pdb/1a/1a5r/nostruct-align/1a5r.t2k-w0.5.mod(21): Reading nostruct-align/1a5r.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc27-3556/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1a/1a5r/nostruct-align/1a5r.t2k-w0.5.mod (nostruct-align/1a5r.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1a/1a5r/nostruct-align/1a5r.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.127674 /projects/compbio/experiments/models.97/pdb/1a/1a70/nostruct-align/1a70.t2k-w0.5.mod(21): Reading nostruct-align/1a70.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc52-22367/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1a/1a70/nostruct-align/1a70.t2k-w0.5.mod (nostruct-align/1a70.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1a/1a70/nostruct-align/1a70.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.255674 /projects/compbio/experiments/models.97/pdb/1f/1fp2A/nostruct-align/1fp2A.t2k-w0.5.mod(22): Reading nostruct-align/1fp2A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc71-30160/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1fp2A/nostruct-align/1fp2A.t2k-w0.5.mod (nostruct-align/1fp2A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1fp2A/nostruct-align/1fp2A.t2k-w0.5.mod . Average NLL-Simple NULL score: -24.477682 /projects/compbio/experiments/models.97/pdb/1a/1a5t/nostruct-align/1a5t.t2k-w0.5.mod(22): Reading nostruct-align/1a5t.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc42-22833/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1a/1a5t/nostruct-align/1a5t.t2k-w0.5.mod (nostruct-align/1a5t.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1a/1a5t/nostruct-align/1a5t.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.683691 /projects/compbio/experiments/models.97/pdb/1c/1c8nA/nostruct-align/1c8nA.t2k-w0.5.mod(22): Reading nostruct-align/1c8nA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc22-2272/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1c/1c8nA/nostruct-align/1c8nA.t2k-w0.5.mod (nostruct-align/1c8nA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1c/1c8nA/nostruct-align/1c8nA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.209677 /projects/compbio/experiments/models.97/pdb/1a/1a76/nostruct-align/1a76.t2k-w0.5.mod(22): Reading nostruct-align/1a76.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc59-30158/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1a/1a76/nostruct-align/1a76.t2k-w0.5.mod (nostruct-align/1a76.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1a/1a76/nostruct-align/1a76.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.817671 /projects/compbio/experiments/models.97/pdb/1g/1g96A/nostruct-align/1g96A.t2k-w0.5.mod(21): Reading nostruct-align/1g96A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc16-1615/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1g/1g96A/nostruct-align/1g96A.t2k-w0.5.mod (nostruct-align/1g96A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1g/1g96A/nostruct-align/1g96A.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.446676 /projects/compbio/experiments/models.97/pdb/1d/1d4tA/nostruct-align/1d4tA.t2k-w0.5.mod(21): Reading nostruct-align/1d4tA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc12-25070/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1d/1d4tA/nostruct-align/1d4tA.t2k-w0.5.mod (nostruct-align/1d4tA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1d/1d4tA/nostruct-align/1d4tA.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.111681 /projects/compbio/experiments/models.97/pdb/9g/9gafA/nostruct-align/9gafA.t2k-w0.5.mod(22): Reading nostruct-align/9gafA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc21-4660/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/9g/9gafA/nostruct-align/9gafA.t2k-w0.5.mod (nostruct-align/9gafA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/9g/9gafA/nostruct-align/9gafA.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.498693 /projects/compbio/experiments/models.97/pdb/1b/1bx2B/nostruct-align/1bx2B.t2k-w0.5.mod(21): Reading nostruct-align/1bx2B.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc44-26747/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1b/1bx2B/nostruct-align/1bx2B.t2k-w0.5.mod (nostruct-align/1bx2B.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1b/1bx2B/nostruct-align/1bx2B.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.847694 /projects/compbio/experiments/models.97/pdb/2e/2eiaB/nostruct-align/2eiaB.t2k-w0.5.mod(21): Reading nostruct-align/2eiaB.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc76-7622/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/2e/2eiaB/nostruct-align/2eiaB.t2k-w0.5.mod (nostruct-align/2eiaB.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/2e/2eiaB/nostruct-align/2eiaB.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.744675 /projects/compbio/experiments/models.97/pdb/1c/1crzA/nostruct-align/1crzA.t2k-w0.5.mod(22): Reading nostruct-align/1crzA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc77-20175/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1c/1crzA/nostruct-align/1crzA.t2k-w0.5.mod (nostruct-align/1crzA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1c/1crzA/nostruct-align/1crzA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.590672 /projects/compbio/experiments/models.97/pdb/1i/1i0cA/nostruct-align/1i0cA.t2k-w0.5.mod(21): Reading nostruct-align/1i0cA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc85-25364/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1i/1i0cA/nostruct-align/1i0cA.t2k-w0.5.mod (nostruct-align/1i0cA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1i/1i0cA/nostruct-align/1i0cA.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.523697 /projects/compbio/experiments/models.97/pdb/1q/1qc7A/nostruct-align/1qc7A.t2k-w0.5.mod(22): Reading nostruct-align/1qc7A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc66-3163/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1q/1qc7A/nostruct-align/1qc7A.t2k-w0.5.mod (nostruct-align/1qc7A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1q/1qc7A/nostruct-align/1qc7A.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.887688 /projects/compbio/experiments/models.97/pdb/1u/1utg/nostruct-align/1utg.t2k-w0.5.mod(22): Reading nostruct-align/1utg.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc18-15029/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1u/1utg/nostruct-align/1utg.t2k-w0.5.mod (nostruct-align/1utg.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1u/1utg/nostruct-align/1utg.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.045675 /projects/compbio/experiments/models.97/pdb/1r/1regX/nostruct-align/1regX.t2k-w0.5.mod(22): Reading nostruct-align/1regX.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc72-25673/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1r/1regX/nostruct-align/1regX.t2k-w0.5.mod (nostruct-align/1regX.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1r/1regX/nostruct-align/1regX.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.357697 /projects/compbio/experiments/models.97/pdb/1e/1ekeA/nostruct-align/1ekeA.t2k-w0.5.mod(22): Reading nostruct-align/1ekeA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc65-27634/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1ekeA/nostruct-align/1ekeA.t2k-w0.5.mod (nostruct-align/1ekeA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1ekeA/nostruct-align/1ekeA.t2k-w0.5.mod . Average NLL-Simple NULL score: -22.973675 /projects/compbio/experiments/models.97/pdb/1a/1a6f/nostruct-align/1a6f.t2k-w0.5.mod(22): Reading nostruct-align/1a6f.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc60-19152/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1a/1a6f/nostruct-align/1a6f.t2k-w0.5.mod (nostruct-align/1a6f.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1a/1a6f/nostruct-align/1a6f.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.459692 /projects/compbio/experiments/models.97/pdb/1t/1tlfA/nostruct-align/1tlfA.t2k-w0.5.mod(21): Reading nostruct-align/1tlfA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc29-22672/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1t/1tlfA/nostruct-align/1tlfA.t2k-w0.5.mod (nostruct-align/1tlfA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1t/1tlfA/nostruct-align/1tlfA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.395672 /projects/compbio/experiments/models.97/pdb/1e/1e8cA/nostruct-align/1e8cA.t2k-w0.5.mod(22): Reading nostruct-align/1e8cA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc69-22806/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1e8cA/nostruct-align/1e8cA.t2k-w0.5.mod (nostruct-align/1e8cA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1e8cA/nostruct-align/1e8cA.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.342674 /projects/compbio/experiments/models.97/pdb/1f/1fgkA/nostruct-align/1fgkA.t2k-w0.5.mod(21): Reading nostruct-align/1fgkA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc77-14399/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1fgkA/nostruct-align/1fgkA.t2k-w0.5.mod (nostruct-align/1fgkA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1fgkA/nostruct-align/1fgkA.t2k-w0.5.mod . Average NLL-Simple NULL score: -23.980696 /projects/compbio/experiments/models.97/pdb/1j/1jh3A/nostruct-align/1jh3A.t2k-w0.5.mod(22): Reading nostruct-align/1jh3A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc54-2987/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1j/1jh3A/nostruct-align/1jh3A.t2k-w0.5.mod (nostruct-align/1jh3A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1j/1jh3A/nostruct-align/1jh3A.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.928690 /projects/compbio/experiments/models.97/pdb/1j/1jfuA/nostruct-align/1jfuA.t2k-w0.5.mod(21): Reading nostruct-align/1jfuA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc70-30748/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1j/1jfuA/nostruct-align/1jfuA.t2k-w0.5.mod (nostruct-align/1jfuA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1j/1jfuA/nostruct-align/1jfuA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.818676 /projects/compbio/experiments/models.97/pdb/1g/1gab/nostruct-align/1gab.t2k-w0.5.mod(21): Reading nostruct-align/1gab.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc87-21194/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1g/1gab/nostruct-align/1gab.t2k-w0.5.mod (nostruct-align/1gab.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1g/1gab/nostruct-align/1gab.t2k-w0.5.mod . Average NLL-Simple NULL score: -16.740696 /projects/compbio/experiments/models.97/pdb/1a/1a6l/nostruct-align/1a6l.t2k-w0.5.mod(21): Reading nostruct-align/1a6l.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc80-11181/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1a/1a6l/nostruct-align/1a6l.t2k-w0.5.mod (nostruct-align/1a6l.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1a/1a6l/nostruct-align/1a6l.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.751675 /projects/compbio/experiments/models.97/pdb/1h/1hw1A/nostruct-align/1hw1A.t2k-w0.5.mod(22): Reading nostruct-align/1hw1A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc28-2482/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1h/1hw1A/nostruct-align/1hw1A.t2k-w0.5.mod (nostruct-align/1hw1A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1h/1hw1A/nostruct-align/1hw1A.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.530691 /projects/compbio/experiments/models.97/pdb/1a/1a6m/nostruct-align/1a6m.t2k-w0.5.mod(22): Reading nostruct-align/1a6m.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc60-19583/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1a/1a6m/nostruct-align/1a6m.t2k-w0.5.mod (nostruct-align/1a6m.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1a/1a6m/nostruct-align/1a6m.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.444687 /projects/compbio/experiments/models.97/pdb/1g/1gcqA/nostruct-align/1gcqA.t2k-w0.5.mod(21): Reading nostruct-align/1gcqA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc65-7842/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1g/1gcqA/nostruct-align/1gcqA.t2k-w0.5.mod (nostruct-align/1gcqA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1g/1gcqA/nostruct-align/1gcqA.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.327677 /projects/compbio/experiments/models.97/pdb/1v/1vdrA/nostruct-align/1vdrA.t2k-w0.5.mod(21): Reading nostruct-align/1vdrA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc34-7154/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1v/1vdrA/nostruct-align/1vdrA.t2k-w0.5.mod (nostruct-align/1vdrA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1v/1vdrA/nostruct-align/1vdrA.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.745684 /projects/compbio/experiments/models.97/pdb/1r/1r2fA/nostruct-align/1r2fA.t2k-w0.5.mod(21): Reading nostruct-align/1r2fA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc21-13755/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1r/1r2fA/nostruct-align/1r2fA.t2k-w0.5.mod (nostruct-align/1r2fA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1r/1r2fA/nostruct-align/1r2fA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.682673 /projects/compbio/experiments/models.97/pdb/1g/1g0oA/nostruct-align/1g0oA.t2k-w0.5.mod(21): Reading nostruct-align/1g0oA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc12-5822/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1g/1g0oA/nostruct-align/1g0oA.t2k-w0.5.mod (nostruct-align/1g0oA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1g/1g0oA/nostruct-align/1g0oA.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.649689 /projects/compbio/experiments/models.97/pdb/1g/1gcqC/nostruct-align/1gcqC.t2k-w0.5.mod(22): Reading nostruct-align/1gcqC.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc72-20239/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1g/1gcqC/nostruct-align/1gcqC.t2k-w0.5.mod (nostruct-align/1gcqC.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1g/1gcqC/nostruct-align/1gcqC.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.452682 /projects/compbio/experiments/models.97/pdb/1a/1a6q/nostruct-align/1a6q.t2k-w0.5.mod(22): Reading nostruct-align/1a6q.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc64-7419/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1a/1a6q/nostruct-align/1a6q.t2k-w0.5.mod (nostruct-align/1a6q.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1a/1a6q/nostruct-align/1a6q.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.713676 /projects/compbio/experiments/models.97/pdb/1a/1a80/nostruct-align/1a80.t2k-w0.5.mod(21): Reading nostruct-align/1a80.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc74-21352/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1a/1a80/nostruct-align/1a80.t2k-w0.5.mod (nostruct-align/1a80.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1a/1a80/nostruct-align/1a80.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.432680 /projects/compbio/experiments/models.97/pdb/1f/1fnuA/nostruct-align/1fnuA.t2k-w0.5.mod(22): Reading nostruct-align/1fnuA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc76-23020/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1fnuA/nostruct-align/1fnuA.t2k-w0.5.mod (nostruct-align/1fnuA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1fnuA/nostruct-align/1fnuA.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.544682 /projects/compbio/experiments/models.97/pdb/1g/1gai/nostruct-align/1gai.t2k-w0.5.mod(22): Reading nostruct-align/1gai.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc77-20942/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1g/1gai/nostruct-align/1gai.t2k-w0.5.mod (nostruct-align/1gai.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1g/1gai/nostruct-align/1gai.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.238674 /projects/compbio/experiments/models.97/pdb/1f/1fp3A/nostruct-align/1fp3A.t2k-w0.5.mod(22): Reading nostruct-align/1fp3A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc58-1944/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1f/1fp3A/nostruct-align/1fp3A.t2k-w0.5.mod (nostruct-align/1fp3A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1f/1fp3A/nostruct-align/1fp3A.t2k-w0.5.mod . Average NLL-Simple NULL score: -22.448681 /projects/compbio/experiments/models.97/pdb/1a/1a6s/nostruct-align/1a6s.t2k-w0.5.mod(21): Reading nostruct-align/1a6s.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc98-25987/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1a/1a6s/nostruct-align/1a6s.t2k-w0.5.mod (nostruct-align/1a6s.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1a/1a6s/nostruct-align/1a6s.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.291687 /projects/compbio/experiments/models.97/pdb/1g/1gal/nostruct-align/1gal.t2k-w0.5.mod(21): Reading nostruct-align/1gal.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc17-32540/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1g/1gal/nostruct-align/1gal.t2k-w0.5.mod (nostruct-align/1gal.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1g/1gal/nostruct-align/1gal.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.323671 /projects/compbio/experiments/models.97/pdb/1c/1ckqA/nostruct-align/1ckqA.t2k-w0.5.mod(21): Reading nostruct-align/1ckqA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc58-7312/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1c/1ckqA/nostruct-align/1ckqA.t2k-w0.5.mod (nostruct-align/1ckqA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1c/1ckqA/nostruct-align/1ckqA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.150696 /projects/compbio/experiments/models.97/pdb/1n/1nkd/nostruct-align/1nkd.t2k-w0.5.mod(22): Reading nostruct-align/1nkd.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc55-20775/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1n/1nkd/nostruct-align/1nkd.t2k-w0.5.mod (nostruct-align/1nkd.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1n/1nkd/nostruct-align/1nkd.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.617682 /projects/compbio/experiments/models.97/pdb/1c/1c8oA/nostruct-align/1c8oA.t2k-w0.5.mod(21): Reading nostruct-align/1c8oA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc53-24737/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1c/1c8oA/nostruct-align/1c8oA.t2k-w0.5.mod (nostruct-align/1c8oA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1c/1c8oA/nostruct-align/1c8oA.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.691683 /projects/compbio/experiments/models.97/pdb/1g/1g97A/nostruct-align/1g97A.t2k-w0.5.mod(21): Reading nostruct-align/1g97A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc55-27916/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1g/1g97A/nostruct-align/1g97A.t2k-w0.5.mod (nostruct-align/1g97A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1g/1g97A/nostruct-align/1g97A.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.025679 /projects/compbio/experiments/models.97/pdb/1e/1eyyA/nostruct-align/1eyyA.t2k-w0.5.mod(21): Reading nostruct-align/1eyyA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc72-15606/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1eyyA/nostruct-align/1eyyA.t2k-w0.5.mod (nostruct-align/1eyyA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1eyyA/nostruct-align/1eyyA.t2k-w0.5.mod . Average NLL-Simple NULL score: -24.725683 /projects/compbio/experiments/models.97/pdb/1d/1dgwA/nostruct-align/1dgwA.t2k-w0.5.mod(22): Reading nostruct-align/1dgwA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc62-27566/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1d/1dgwA/nostruct-align/1dgwA.t2k-w0.5.mod (nostruct-align/1dgwA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1d/1dgwA/nostruct-align/1dgwA.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.610687 /projects/compbio/experiments/models.97/pdb/1a/1a87/nostruct-align/1a87.t2k-w0.5.mod(21): Reading nostruct-align/1a87.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc09-20265/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1a/1a87/nostruct-align/1a87.t2k-w0.5.mod (nostruct-align/1a87.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1a/1a87/nostruct-align/1a87.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.989677 /projects/compbio/experiments/models.97/pdb/1j/1juhA/nostruct-align/1juhA.t2k-w0.5.mod(22): Reading nostruct-align/1juhA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc38-27288/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1j/1juhA/nostruct-align/1juhA.t2k-w0.5.mod (nostruct-align/1juhA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1j/1juhA/nostruct-align/1juhA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.239683 /projects/compbio/experiments/models.97/pdb/1n/1nkl/nostruct-align/1nkl.t2k-w0.5.mod(21): Reading nostruct-align/1nkl.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc40-21909/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1n/1nkl/nostruct-align/1nkl.t2k-w0.5.mod (nostruct-align/1nkl.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1n/1nkl/nostruct-align/1nkl.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.199671 /projects/compbio/experiments/models.97/pdb/1i/1icfA/nostruct-align/1icfA.t2k-w0.5.mod(21): Reading nostruct-align/1icfA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc12-15270/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1i/1icfA/nostruct-align/1icfA.t2k-w0.5.mod (nostruct-align/1icfA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1i/1icfA/nostruct-align/1icfA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.821693 /projects/compbio/experiments/models.97/pdb/1e/1e29A/nostruct-align/1e29A.t2k-w0.5.mod(22): Reading nostruct-align/1e29A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc24-8488/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1e29A/nostruct-align/1e29A.t2k-w0.5.mod (nostruct-align/1e29A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1e29A/nostruct-align/1e29A.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.729698 /projects/compbio/experiments/models.97/pdb/1c/1ct9A/nostruct-align/1ct9A.t2k-w0.5.mod(21): Reading nostruct-align/1ct9A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc41-19126/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1c/1ct9A/nostruct-align/1ct9A.t2k-w0.5.mod (nostruct-align/1ct9A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1c/1ct9A/nostruct-align/1ct9A.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.674673 /projects/compbio/experiments/models.97/pdb/1i/1i0dA/nostruct-align/1i0dA.t2k-w0.5.mod(22): Reading nostruct-align/1i0dA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc74-13413/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1i/1i0dA/nostruct-align/1i0dA.t2k-w0.5.mod (nostruct-align/1i0dA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1i/1i0dA/nostruct-align/1i0dA.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.695679 /projects/compbio/experiments/models.97/pdb/1i/1icfB/nostruct-align/1icfB.t2k-w0.5.mod(21): Reading nostruct-align/1icfB.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc67-31257/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1i/1icfB/nostruct-align/1icfB.t2k-w0.5.mod (nostruct-align/1icfB.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1i/1icfB/nostruct-align/1icfB.t2k-w0.5.mod . Average NLL-Simple NULL score: -16.292690 /projects/compbio/experiments/models.97/pdb/1q/1qazA/nostruct-align/1qazA.t2k-w0.5.mod(21): Reading nostruct-align/1qazA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc59-28849/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1q/1qazA/nostruct-align/1qazA.t2k-w0.5.mod (nostruct-align/1qazA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1q/1qazA/nostruct-align/1qazA.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.958689 /projects/compbio/experiments/models.97/pdb/1n/1nkr/nostruct-align/1nkr.t2k-w0.5.mod(22): Reading nostruct-align/1nkr.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc60-11660/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1n/1nkr/nostruct-align/1nkr.t2k-w0.5.mod (nostruct-align/1nkr.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1n/1nkr/nostruct-align/1nkr.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.337675 /projects/compbio/experiments/models.97/pdb/1h/1hnjA/nostruct-align/1hnjA.t2k-w0.5.mod(21): Reading nostruct-align/1hnjA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc25-26258/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1h/1hnjA/nostruct-align/1hnjA.t2k-w0.5.mod (nostruct-align/1hnjA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1h/1hnjA/nostruct-align/1hnjA.t2k-w0.5.mod . Average NLL-Simple NULL score: -21.140690 /projects/compbio/experiments/models.97/pdb/1i/1icfI/nostruct-align/1icfI.t2k-w0.5.mod(22): Reading nostruct-align/1icfI.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc69-30133/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1i/1icfI/nostruct-align/1icfI.t2k-w0.5.mod (nostruct-align/1icfI.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1i/1icfI/nostruct-align/1icfI.t2k-w0.5.mod . Average NLL-Simple NULL score: -16.311674 /projects/compbio/experiments/models.97/pdb/1e/1ekfA/nostruct-align/1ekfA.t2k-w0.5.mod(22): Reading nostruct-align/1ekfA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc45-6347/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1e/1ekfA/nostruct-align/1ekfA.t2k-w0.5.mod (nostruct-align/1ekfA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1e/1ekfA/nostruct-align/1ekfA.t2k-w0.5.mod . Average NLL-Simple NULL score: -22.854689 /projects/compbio/experiments/models.97/pdb/1t/1tlgA/nostruct-align/1tlgA.t2k-w0.5.mod(22): Reading nostruct-align/1tlgA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc45-17060/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1t/1tlgA/nostruct-align/1tlgA.t2k-w0.5.mod (nostruct-align/1tlgA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1t/1tlgA/nostruct-align/1tlgA.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.767687 /projects/compbio/experiments/models.97/pdb/2b/2bmhA/nostruct-align/2bmhA.t2k-w0.5.mod(21): Reading nostruct-align/2bmhA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc77-5880/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/2b/2bmhA/nostruct-align/2bmhA.t2k-w0.5.mod (nostruct-align/2bmhA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/2b/2bmhA/nostruct-align/2bmhA.t2k-w0.5.mod . Average NLL-Simple NULL score: -25.150688 /projects/compbio/experiments/models.97/pdb/1a/1a7j/nostruct-align/1a7j.t2k-w0.5.mod(22): Reading nostruct-align/1a7j.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc61-1264/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1a/1a7j/nostruct-align/1a7j.t2k-w0.5.mod (nostruct-align/1a7j.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1a/1a7j/nostruct-align/1a7j.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.574688 /projects/compbio/experiments/models.97/pdb/1j/1jfvA/nostruct-align/1jfvA.t2k-w0.5.mod(22): Reading nostruct-align/1jfvA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc54-6011/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1j/1jfvA/nostruct-align/1jfvA.t2k-w0.5.mod (nostruct-align/1jfvA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1j/1jfvA/nostruct-align/1jfvA.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.841675 /projects/compbio/experiments/models.97/pdb/1d/1dvjA/nostruct-align/1dvjA.t2k-w0.5.mod(22): Reading nostruct-align/1dvjA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc68-28753/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1d/1dvjA/nostruct-align/1dvjA.t2k-w0.5.mod (nostruct-align/1dvjA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1d/1dvjA/nostruct-align/1dvjA.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.943672 /projects/compbio/experiments/models.97/pdb/1d/1dvjC/nostruct-align/1dvjC.t2k-w0.5.mod(21): Reading nostruct-align/1dvjC.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc42-10140/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1d/1dvjC/nostruct-align/1dvjC.t2k-w0.5.mod (nostruct-align/1dvjC.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1d/1dvjC/nostruct-align/1dvjC.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.030693 /projects/compbio/experiments/models.97/pdb/1d/1dgwX/nostruct-align/1dgwX.t2k-w0.5.mod(22): Reading nostruct-align/1dgwX.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc24-8299/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1d/1dgwX/nostruct-align/1dgwX.t2k-w0.5.mod (nostruct-align/1dgwX.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1d/1dgwX/nostruct-align/1dgwX.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.008671 /projects/compbio/experiments/models.97/pdb/1i/1is8A/nostruct-align/1is8A.t2k-w0.5.mod(22): Reading nostruct-align/1is8A.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc41-5204/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1i/1is8A/nostruct-align/1is8A.t2k-w0.5.mod (nostruct-align/1is8A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1i/1is8A/nostruct-align/1is8A.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.212685 /projects/compbio/experiments/models.97/pdb/1i/1iqzA/nostruct-align/1iqzA.t2k-w0.5.mod(22): Reading nostruct-align/1iqzA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc46-6061/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1i/1iqzA/nostruct-align/1iqzA.t2k-w0.5.mod (nostruct-align/1iqzA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1i/1iqzA/nostruct-align/1iqzA.t2k-w0.5.mod . Average NLL-Simple NULL score: -17.121698 /projects/compbio/experiments/models.97/pdb/1g/1gbg/nostruct-align/1gbg.t2k-w0.5.mod(22): Reading nostruct-align/1gbg.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc75-17658/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1g/1gbg/nostruct-align/1gbg.t2k-w0.5.mod (nostruct-align/1gbg.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1g/1gbg/nostruct-align/1gbg.t2k-w0.5.mod . Average NLL-Simple NULL score: -19.256676 /projects/compbio/experiments/models.97/pdb/1d/1dgwY/nostruct-align/1dgwY.t2k-w0.5.mod(22): Reading nostruct-align/1dgwY.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc60-13300/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1d/1dgwY/nostruct-align/1dgwY.t2k-w0.5.mod (nostruct-align/1dgwY.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1d/1dgwY/nostruct-align/1dgwY.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.437691 /projects/compbio/experiments/models.97/pdb/1b/1bolA/nostruct-align/1bolA.t2k-w0.5.mod(21): Reading nostruct-align/1bolA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc81-984/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1b/1bolA/nostruct-align/1bolA.t2k-w0.5.mod (nostruct-align/1bolA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1b/1bolA/nostruct-align/1bolA.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.553679 /projects/compbio/experiments/models.97/pdb/1a/1a7s/nostruct-align/1a7s.t2k-w0.5.mod(21): Reading nostruct-align/1a7s.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc10-24049/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1a/1a7s/nostruct-align/1a7s.t2k-w0.5.mod (nostruct-align/1a7s.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1a/1a7s/nostruct-align/1a7s.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.236683 /projects/compbio/experiments/models.97/pdb/1a/1a91/nostruct-align/1a91.t2k-w0.5.mod(21): Reading nostruct-align/1a91.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc04-7702/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1a/1a91/nostruct-align/1a91.t2k-w0.5.mod (nostruct-align/1a91.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1a/1a91/nostruct-align/1a91.t2k-w0.5.mod . Average NLL-Simple NULL score: -20.502676 /projects/compbio/experiments/models.97/pdb/1q/1qpmA/nostruct-align/1qpmA.t2k-w0.5.mod(21): Reading nostruct-align/1qpmA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc14-18247/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1q/1qpmA/nostruct-align/1qpmA.t2k-w0.5.mod (nostruct-align/1qpmA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1q/1qpmA/nostruct-align/1qpmA.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.332689 /projects/compbio/experiments/models.97/pdb/1a/1azpA/nostruct-align/1azpA.t2k-w0.5.mod(21): Reading nostruct-align/1azpA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc38-15906/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1a/1azpA/nostruct-align/1azpA.t2k-w0.5.mod (nostruct-align/1azpA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1a/1azpA/nostruct-align/1azpA.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.784681 /projects/compbio/experiments/models.97/pdb/1c/1c8pA/nostruct-align/1c8pA.t2k-w0.5.mod(21): Reading nostruct-align/1c8pA.t2k-w0.5-db model number 1 from MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc70-25700/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1c/1c8pA/nostruct-align/1c8pA.t2k-w0.5.mod (nostruct-align/1c8pA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Single Track Model: /projects/compbio/experiments/models.97/pdb/1c/1c8pA/nostruct-align/1c8pA.t2k-w0.5.mod . Average NLL-Simple NULL score: -18.837700 /projects/compbio/ex