# List of top-scoring protein chains for t2k-100-30-dssp_ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1ezvD 245 2.55e-01 1be3D a.3.1.3 59546 f.2.1.8 59547 1byqA 228 9.54e-01 1yer d.122.1.1 41100 1g73C 121 9.77e-01 1g3fA g.52.1.1 45375 1yer 228 1.54e+00 1yer d.122.1.1 41101 1b65A 375 1.59e+00 1b65A d.154.1.1 42020 1ndh 272 2.44e+00 1ndh b.43.4.2 25662 c.25.1.1 31552 1am7A 158 2.49e+00 1am7A d.2.1.4 36981 1g3fA 117 2.92e+00 1g3fA g.52.1.1 45378 1d2zA 108 3.18e+00 1d2zA a.77.1.1 18437 1i7pA 274 3.44e+00 b.43.4.2 66048 c.25.1.1 66049 1pjcA 361 4.31e+00 1sayA c.2.1.4 30101 c.23.12.2 31361 1sayA 361 4.34e+00 1sayA c.2.1.4 30102 c.23.12.2 31362 1irw 108 4.69e+00 1ycc a.3.1.1 15855 1pjbA 361 4.80e+00 1sayA c.2.1.4 30103 c.23.12.2 31363 1ycc 108 5.34e+00 1ycc a.3.1.1 15834 5cytR 104 5.45e+00 1ycc a.3.1.1 15878 1ayx 492 5.86e+00 1ayx a.102.1.1 18825 1qqfA 277 6.11e+00 1c3d a.102.4.4 18875 1qlnA 883 6.48e+00 1cezA e.8.1.3 43111 1cezA 883 6.52e+00 1cezA e.8.1.3 43110 1aj8A 371 7.19e+00 1aj8A a.103.1.1 18900 1ccr 112 7.41e+00 1ycc a.3.1.1 15877 1ayyA 151 7.57e+00 1apyA d.153.1.5 42016 1ckiA 317 7.92e+00 1csn d.144.1.1 41660 1bal 51 8.20e+00 1bbl a.9.1.1 16357 1ton 235 8.81e+00 5ptp b.47.1.2 26307 1glm 470 9.48e+00 1ayx a.102.1.1 18821 1qo7A 394 1.04e+01 1qo7A c.69.1.11 34697 2prk 279 1.22e+01 1gci c.41.1.1 32548 1g2nA 264 1.29e+01 1lbd a.123.1.1 60227 1ytc 112 1.31e+01 1ycc a.3.1.1 15835 1ic6A 279 1.38e+01 1gci c.41.1.1 62257 1gai 472 1.40e+01 1ayx a.102.1.1 18819 1qnoA 344 1.43e+01 1qnoA c.1.8.3 28838 1mkaA 171 1.44e+01 1mkaA d.38.1.2 38543 1kxlA 199 1.45e+01 1qnrA 344 1.48e+01 1qnoA c.1.8.3 28834 1d2nA 272 1.82e+01 1d2nA c.37.1.13 32428 1pls 113 1.83e+01 1pls b.55.1.1 26965 1pme 380 1.83e+01 1hcl d.144.1.1 41653 1ggwA 140 1.89e+01 1ggwA a.39.1.5 60490 1a8y 367 1.95e+01 1a8y c.47.1.3 32781 c.47.1.3 32782 c.47.1.3 32783 1nsf 273 2.03e+01 1d2nA c.37.1.13 32429 1ebmA 317 2.12e+01 1ebmA a.96.1.3 18751 d.129.1.2 41300 1a6q 382 2.14e+01 1a6q d.158.1.1 42063 1h2aS 317 2.31e+01 2frvA e.19.1.1 43311 1ko9A 345 2.47e+01 a.96.1.3 68717 d.129.1.2 68718 1kwhA 492 2.67e+01 c.94.1.1 68876 1hj9A 226 2.68e+01 b.47.1.2 65845 1acf 125 2.83e+01 3nul d.110.1.1 40882 1i88A 389 3.11e+01 c.95.1.2 66070 c.95.1.2 66071 1i86A 389 3.11e+01 c.95.1.2 66068 c.95.1.2 66069 1gtqA 140 3.16e+01 1b66A d.96.1.2 40661 1lc0A 294 3.20e+01 1ft1A 377 3.22e+01 1ft1A a.118.6.1 19186 1imoA 88 3.24e+01 1imoA c.15.1.2 62590 1dlfH 124 3.27e+01 1igtB b.1.1.1 20383 1hc7A 477 3.33e+01 1hc7A c.51.1.1 60938 d.104.1.1 60939 g.56.1.1 60940 1k30A 368 3.38e+01 c.112.1.1 68067 1fxkC 133 3.42e+01 1fxkC a.2.5.1 15702 1ckv 141 3.44e+01 1ckv d.137.1.1 41452 1i1kA 309 3.53e+01 1daaA e.17.1.1 61533 1fggA 261 3.61e+01 1fggA c.68.1.7 34576 1qqyA 130 3.65e+01 3lzt d.2.1.2 36586 1tubA 440 3.65e+01 1tubA c.32.1.1 31751 d.79.2.1 39803 1jli 112 3.75e+01 1jli a.26.1.2 16884 1bi5A 389 3.79e+01 1bi5A c.95.1.2 35985 c.95.1.2 35986 1b66A 140 3.87e+01 1b66A d.96.1.2 40657 1atlA 202 3.90e+01 1atlA d.92.1.9 40322 1prxA 224 3.92e+01 1prxA c.47.1.10 33076 1bzg 34 3.95e+01 1bzg j.15.1.1 46166 1rypJ 204 3.97e+01 d.153.1.4 41878