Description | Link to file | Date |
Inputs |
Submitted sequence(s) |
T0180.a2m |
08/12/02 |
SAM_T02 multiple alignment in a2m format |
T0180.t2k.a2m.gz |
08/12/02 |
SAM_T02 multiple alignment in pretty html format |
T0180.t2k.pa.html |
08/12/02 |
SAM_T02 target hidden Markov model |
T0180.t2k-w0.5.mod |
08/12/02 |
Secondary Structure Prediction |
DSSP EBGHSTL structure prediction CASP format |
T0180.t2k.dssp-ebghstl |
08/12/02 |
DSSP EBGHSTL structure prediction RDB format |
T0180.t2k.dssp-ebghstl.rdb |
08/12/02 |
DSSP EBGHSTL structure prediction sequence format |
T0180.t2k.dssp-ebghstl.seq |
08/12/02 |
Stride EBGHTL structure prediction CASP format |
T0180.t2k.stride-ebghtl |
08/12/02 |
Stride EBGHTL structure prediction RDB format |
T0180.t2k.stride-ebghtl.rdb |
08/12/02 |
Stride EBGHTL structure prediction sequence format |
T0180.t2k.stride-ebghtl.seq |
08/12/02 |
Str structure prediction CASP format |
T0180.t2k.str |
08/12/02 |
Str structure prediction RDB format |
T0180.t2k.str.rdb |
08/12/02 |
Str structure prediction sequence format |
T0180.t2k.str.seq |
08/12/02 |
Alpha angle prediction RDB format |
T0180.t2k.alpha.rdb |
08/12/02 |
Alpha angle prediction sequence format |
T0180.t2k.alpha.seq |
08/12/02 |
DSSP 3-value prediction RDB format |
T0180.t2k.dssp_ehl2.rdb |
08/12/02 |
Sequence Logos |
SAM_T02 multiple alignment in sequence logo format |
T0180.t2k.w0.5-logo.eps |
08/12/02 |
DSSP EBGHSTL structure prediction in sequence logo format |
T0180.t2k.dssp-ebghstl-logo.eps |
08/12/02 |
Stride EBGHTL structure prediction in sequence logo format |
T0180.t2k.stride-ebghtl-logo.eps |
08/12/02 |
Str structure prediction in sequence logo format |
T0180.t2k.str-logo.eps |
08/12/02 |
Alpha angle prediction in sequence logo format |
T0180.t2k.alpha-logo.eps |
08/12/02 |
DSSP 3-value prediction in sequence logo format |
T0180.t2k.dssp_ehl2-logo.eps |
08/12/02 |
Target model scores |
Annotated amino acid/100-30-dssp-ebghstl two-track target model scores |
T0180.t2k-100-30-dssp-ebghstl-scores.html |
08/12/02 |
Annotated amino acid/100-30-stride-ebghtl two-track target model scores |
T0180.t2k-100-30-stride-ebghtl-scores.html |
08/12/02 |
Annotated amino acid/100-30-str two-track target model scores |
T0180.t2k-100-30-str-scores.html |
08/12/02 |
Annotated amino acid/100-30-alpha two-track target model scores |
T0180.t2k-100-30-alpha-scores.html |
08/12/02 |
Annotated amino acid/100-30-dssp_ehl2 two-track target model scores |
T0180.t2k-100-30-dssp_ehl2-scores.html |
08/12/02 |
Annotated amino acid single-track target model scores of PDB |
T0180.t2k-w0.5-scores.html |
08/12/02 |
Template model scores |
Annotated template model scores |
T0180.template-lib-scores.html |
08/12/02 |
Top Hits |
Best scoring hits from all models |
T0180.t2k.best-scores.html |
08/12/02 |
Alignments for Top Hits |
T02 Many Alignments Summary |
T0180.t2k.many_alignments.html |
08/12/02 |
T02 Top Models Summary |
T0180.t2k.top_reported_alignments.html |
08/12/02 |
Undertaker (3d) files |
Script for dssp coloring in rasmol |
T0180.t2k.dssp-color.rasmol |
08/12/02 |
Script for stride coloring in rasmol |
T0180.t2k.stride-color.rasmol |
08/12/02 |
Script for str coloring in rasmol |
T0180.t2k.str-color.rasmol |
08/12/02 |
Script for alpha coloring in rasmol |
T0180.t2k.alpha-color.rasmol |
08/12/02 |
Multiple alignment for undertaker templates |
T0180.t2k-2track-undertaker.a2m |
08/12/02 |
many alignments for undertaker templates |
T0180.t2k.undertaker-align.script |
08/12/02 |
PDB file with models for many alignments |
T0180.t2k.undertaker-align.pdb.gz |
08/12/02 |
Fragment list for undertaker (from fragfinder) |
T0180.t2k.frag |
08/12/02 |
Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001
SAM_T02 web system designed by Rachel Karchin and Kevin Karplus rachelk@soe.ucsc.edu karplus@soe.ucsc.edu