// run from pce/casp5/t0180 SetSeed InfilePrefix Include define-score.script Time MakeGenericFragmentLibrary Time // The following alignments are believed to be good: InFilePrefix ReadFragmentAlignment T0180.t2k-2track-undertaker.a2m InFilePrefix Include T0180.t2k.undertaker-align.script PrintAlignmentsPDB T0180.t2k.undertaker-align.pdb superpose quit