% (null) % (c) 1992-2001 Regents of the University of California, Santa Cruz % % Sequence Alignment and Modeling Software System % http://www.cse.ucsc.edu/research/compbio/sam.html % % ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- % R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: % Extension and analysis of the basic method, CABIOS 12:95-107, 1996. % K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting % remote protein homologies, Bioinformatics 14(10):846-856, 1998. % A. Krogh et al., Hidden Markov models in computational biology: % Applications to protein modeling, JMB 235:1501-1531, Feb 1994. % --------------------------------------------------------------------- % T0180.t2k Host: cc75 Mon Aug 12 11:53:44 2002 % karplus Dir: /projects/compbio/experiments/casp5/t0180 % --------------------------------------------------------------------- % Sequence-model (global) (SW = 0) % Track 0 Coeff 1.000 File T0180.t2k-w0.5.mod % Track 1 Coeff 0.300 File T0180.t2k.str.mod 1pmc.1.1 36 -131.37 -131.37 1pmc.1.0 36 -128.89 -128.89 1gl1I.1.1 36 -128.20 -128.20 1gl1I.1.0 36 -125.65 -125.65 1sxl.1.0 97 -125.48 -125.48 1sxl.1.1 97 -125.32 -125.32 1sxl.2.2 97 -140.77 -140.77 1pmc.2.2 36 -138.25 -138.25 1gl1I.2.2 36 -125.48 -125.48 1k42A.2.2 168 -124.09 -124.09 1jrfA.2.2 47 -123.78 -123.78 1pmc.2.1 36 -123.60 -123.60 1sxl.3.3 97 -143.27 -143.27 1pmc.3.3 36 -136.06 -136.06 1k42A.3.3 168 -124.29 -124.29 1jrfA.3.3 47 -123.75 -123.75 1sxl.3.2 97 -122.78 -122.78 1eesB.3.3 46 -121.65 -121.65 1sxl.4.4 97 -144.30 -144.30 1pmc.4.4 36 -133.21 -133.21 1jrfA.4.4 47 -124.54 -124.54 1k42A.4.4 168 -124.11 -124.11 1eesB.4.4 46 -120.27 -120.27 1sxl.4.3 97 -118.83 -118.83 1sxl.5.5 97 -141.91 -141.91 1pmc.5.5 36 -129.08 -129.08 1k42A.5.5 168 -124.19 -124.19 1jrfA.5.5 47 -123.83 -123.83 1eesB.5.5 46 -120.18 -120.18 2vgh.5.5 55 -119.19 -119.19 1sxl.6.6 97 -136.05 -136.05 1pmc.6.6 36 -129.98 -129.98 1k42A.6.6 168 -123.14 -123.14 1eesB.6.6 46 -120.12 -120.12 1jrfA.6.6 47 -119.81 -119.81 2vgh.6.6 55 -118.78 -118.78 1sxl.7.7 97 -132.98 -132.98 1pmc.7.7 36 -131.01 -131.01 1ji8A.7.7 111 -122.29 -122.29 1k42A.7.7 168 -120.91 -120.91 1eesB.7.7 46 -120.38 -120.38 1jrfA.7.8 47 -117.93 -117.93 1pmc.8.8 36 -132.74 -132.74 1sxl.8.8 97 -130.41 -130.41 1ji8A.8.8 111 -124.03 -124.03 1eesB.8.8 46 -120.33 -120.33 1aj2.8.8 282 -120.28 -120.28 1aj0.8.8 282 -120.27 -120.27 1pmc.9.9 36 -131.23 -131.23 1sxl.9.9 97 -129.07 -129.07 1aj2.9.9 282 -127.49 -127.49 1aj0.9.9 282 -127.49 -127.49 1ji8A.9.9 111 -124.36 -124.36 1jrfA.9.10 47 -124.04 -124.04 1aj2.10.10 282 -136.15 -136.15 1aj0.10.10 282 -136.15 -136.15 1fb6A.10.14 105 -134.36 -134.36 1pmc.10.10 36 -132.28 -132.28 1aj2.10.12 282 -131.55 -131.55 1aj0.10.12 282 -131.54 -131.54 1aj2.11.11 282 -141.63 -141.63 1aj0.11.11 282 -141.63 -141.63 1fb6A.11.15 105 -141.38 -141.38 1aj2.11.13 282 -137.26 -137.26 1aj0.11.13 282 -137.24 -137.24 1qhqA.11.13 140 -136.81 -136.81 1fb6A.12.16 105 -143.87 -143.87 1bjx.12.16 110 -141.52 -141.52 2bjxA.12.16 110 -141.52 -141.52 1aj2.12.12 282 -141.38 -141.38 1aj0.12.12 282 -141.38 -141.38 1qhqA.12.14 140 -137.37 -137.37 1fb6A.13.17 105 -143.75 -143.75 1bjx.13.17 110 -141.67 -141.67 2bjxA.13.17 110 -141.67 -141.67 1aj2.13.15 282 -136.95 -136.95 1aj0.13.15 282 -136.93 -136.93 1qgvA.13.22 142 -136.40 -136.40 1fb6A.14.18 105 -143.27 -143.27 1aj2.14.16 282 -142.02 -142.02 1aj0.14.16 282 -142.01 -142.01 1bjx.14.18 110 -141.35 -141.35 2bjxA.14.18 110 -141.35 -141.35 1qfeA.14.15 252 -136.79 -136.79 1aj2.15.17 282 -146.03 -146.03 1aj0.15.17 282 -146.01 -146.01 1bjx.15.19 110 -143.79 -143.79 2bjxA.15.19 110 -143.79 -143.79 1fb6A.15.19 105 -143.48 -143.48 1qfeA.15.16 252 -140.38 -140.38 1aj2.16.18 282 -147.69 -147.69 1aj0.16.18 282 -147.68 -147.68 1fb6A.16.20 105 -145.60 -145.60 1qfeA.16.17 252 -144.55 -144.55 1bjx.16.20 110 -143.91 -143.91 2bjxA.16.20 110 -143.91 -143.91 1qfeA.17.18 252 -143.59 -143.59 1i50A.17.18 1733 -142.38 -142.38 1qhqA.17.19 140 -141.16 -141.16 1aj2.17.19 282 -140.78 -140.78 1aj0.17.19 282 -140.76 -140.76 1b25A.17.18 619 -139.76 -139.76 1idk.18.20 359 -146.83 -146.83 1i50A.18.19 1733 -146.51 -146.51 1qfeA.18.19 252 -143.96 -143.96 1b25A.18.19 619 -143.02 -143.02 1qhqA.18.20 140 -137.57 -137.57 1jrfA.18.19 47 -135.25 -135.25 1idk.19.21 359 -149.96 -149.96 1i50A.19.20 1733 -145.18 -145.18 1qfeA.19.20 252 -138.55 -138.55 1b25A.19.20 619 -138.02 -138.02 1jrfA.19.20 47 -134.02 -134.02 1earA.19.20 147 -133.55 -133.55 1idk.20.22 359 -151.84 -151.84 1i50A.20.21 1733 -141.99 -141.99 1jrfA.20.21 47 -132.68 -132.68 1qfeA.20.21 252 -132.32 -132.32 2i1b.20.20 153 -132.15 -132.15 1earA.20.21 147 -131.01 -131.01 1idk.21.23 359 -149.41 -149.41 1i50A.21.22 1733 -138.06 -138.06 1jrfA.21.22 47 -130.26 -130.26 2i1b.21.21 153 -130.24 -130.24 1earA.21.22 147 -129.70 -129.70 1qfeA.21.22 252 -127.14 -127.14 1idk.22.24 359 -147.12 -147.12 1i50A.22.23 1733 -135.22 -135.22 1earA.22.23 147 -127.99 -127.99 2i1b.22.22 153 -127.56 -127.56 1jrfA.22.23 47 -126.55 -126.55 1eb0A.22.23 147 -124.88 -124.88 1idk.23.25 359 -142.51 -142.51 1i50A.23.24 1733 -131.12 -131.12 1earA.23.24 147 -126.60 -126.60 2i1b.23.23 153 -124.08 -124.08 1eb0A.23.24 147 -123.68 -123.68 1eq7A.23.24 56 -123.57 -123.57 1idk.24.26 359 -137.61 -137.61 1i50A.24.25 1733 -126.40 -126.40 1earA.24.25 147 -125.22 -125.22 1eq7A.24.25 56 -125.05 -125.05 1mbe.24.24 53 -123.94 -123.94 1eb0A.24.25 147 -122.32 -122.32 1idk.25.27 359 -135.21 -135.21 1mbe.25.25 53 -127.85 -127.85 1eq7A.25.26 56 -124.19 -124.19 1earA.25.26 147 -122.44 -122.44 1sxl.25.26 97 -122.15 -122.15 1i50A.25.26 1733 -121.10 -121.10 1mbe.26.26 53 -128.23 -128.23 1idk.26.28 359 -127.28 -127.28 1sxl.26.27 97 -122.40 -122.40 1eq7A.26.27 56 -121.07 -121.07 2oneA.26.27 436 -119.82 -119.82 1oneA.26.27 436 -119.81 -119.81 1mbe.27.27 53 -129.71 -129.71 1idk.27.29 359 -123.62 -123.62 1sxl.27.28 97 -123.12 -123.12 2oneA.27.28 436 -122.17 -122.17 1oneA.27.28 436 -122.16 -122.16 1kyoA.27.30 430 -121.14 -121.14 1kyoA.28.31 430 -127.40 -127.40 1mbe.28.28 53 -127.31 -127.31 1ezvA.28.31 430 -127.26 -127.26 1sxl.28.29 97 -123.28 -123.28 2oneA.28.29 436 -122.16 -122.16 1oneA.28.29 436 -122.15 -122.15 1kyoA.29.32 430 -131.31 -131.31 1ezvA.29.32 430 -131.24 -131.24 1mbe.29.29 53 -124.53 -124.53 1sxl.29.30 97 -122.57 -122.57 2oneA.29.30 436 -121.76 -121.76 1oneA.29.30 436 -121.75 -121.75 1ezvA.30.33 430 -136.57 -136.57 1kyoA.30.33 430 -136.45 -136.45 1mbe.30.30 53 -122.58 -122.58 1k77A.30.33 260 -122.48 -122.48 1sxl.30.31 97 -122.26 -122.26 2oneA.30.31 436 -120.96 -120.96 1ezvA.31.34 430 -140.53 -140.53 1kyoA.31.34 430 -140.15 -140.15 1k77A.31.34 260 -124.60 -124.60 1sxl.31.32 97 -120.92 -120.92 1mbe.31.31 53 -120.26 -120.26 2oneA.31.32 436 -118.12 -118.12 1ezvA.32.35 430 -144.77 -144.77 1kyoA.32.35 430 -144.13 -144.13 1k77A.32.35 260 -126.60 -126.60 1sxl.32.33 97 -120.33 -120.33 1mbe.32.32 53 -120.15 -120.15 1kfiA.32.32 572 -118.14 -118.14 1ezvA.33.36 430 -148.27 -148.27 1kyoA.33.36 430 -147.44 -147.44 1k77A.33.36 260 -127.03 -127.03 1kfiA.33.33 572 -121.81 -121.81 1mbe.33.33 53 -119.81 -119.81 1jvr.33.37 137 -119.69 -119.69 1ezvA.34.37 430 -150.32 -150.32 1kyoA.34.37 430 -149.41 -149.41 1k77A.34.37 260 -126.89 -126.89 1kfiA.34.34 572 -124.55 -124.55 1ddf.34.34 127 -124.23 -124.23 1jvr.34.38 137 -122.43 -122.43 1ezvA.35.38 430 -152.09 -152.09 1kyoA.35.38 430 -151.06 -151.06 1ddf.35.35 127 -128.75 -128.75 1kfiA.35.35 572 -125.97 -125.97 1k77A.35.38 260 -125.94 -125.94 1jvr.35.39 137 -124.73 -124.73 1ezvA.36.39 430 -151.77 -151.77 1kyoA.36.39 430 -150.54 -150.54 1ddf.36.36 127 -128.60 -128.60 2cas.36.36 548 -126.97 -126.97 1kfiA.36.36 572 -126.30 -126.30 1jvr.36.40 137 -125.39 -125.39 1ezvA.37.40 430 -150.86 -150.86 1kyoA.37.40 430 -149.47 -149.47 2cas.37.37 548 -132.91 -132.91 1kfiA.37.37 572 -127.46 -127.46 1ddf.37.37 127 -126.82 -126.82 1jvr.37.41 137 -125.44 -125.44 1ezvA.38.41 430 -148.34 -148.34 1kyoA.38.41 430 -146.78 -146.78 2cas.38.38 548 -137.61 -137.61 1ef4A.38.39 55 -129.21 -129.21 1kfiA.38.38 572 -128.72 -128.72 1c8gA.38.38 548 -128.16 -128.16 1ezvA.39.42 430 -145.82 -145.82 1kyoA.39.42 430 -144.09 -144.09 2cas.39.39 548 -139.76 -139.76 1ef4A.39.40 55 -135.77 -135.77 1c8gA.39.39 548 -130.50 -130.50 1kfiA.39.39 572 -130.06 -130.06 1ezvA.40.43 430 -142.32 -142.32 1ef4A.40.41 55 -140.66 -140.66 1kyoA.40.43 430 -140.41 -140.41 2cas.40.40 548 -138.19 -138.19 1kfiA.40.40 572 -130.52 -130.52 1c8gA.40.40 548 -129.00 -129.00 1ef4A.41.42 55 -149.29 -149.29 1ezvA.41.44 430 -140.40 -140.40 1kyoA.41.44 430 -138.35 -138.35 2cas.41.41 548 -137.38 -137.38 1kfiA.41.41 572 -131.42 -131.42 1ffkX.41.43 56 -128.24 -128.24 1ef4A.42.43 55 -155.21 -155.21 1ezvA.42.45 430 -135.97 -135.97 2cas.42.42 548 -134.60 -134.60 1kyoA.42.45 430 -133.84 -133.84 1kfiA.42.42 572 -130.87 -130.87 1ffkX.42.44 56 -130.30 -130.30 1ef4A.43.44 55 -165.05 -165.05 2cas.43.43 548 -134.94 -134.94 1ffkX.43.45 56 -133.25 -133.25 1ezvA.43.46 430 -132.20 -132.20 1lre.43.43 81 -131.66 -131.66 1kyoA.43.46 430 -129.97 -129.97 1ef4A.44.45 55 -171.54 -171.54 1ffkX.44.46 56 -136.09 -136.09 1lre.44.44 81 -134.55 -134.55 2cas.44.44 548 -133.12 -133.12 2fn2.44.49 59 -130.45 -130.45 1jj2Z.44.46 56 -130.18 -130.18