PFRMAT SS
TARGET T0180
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-alpha-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	   11 (1 ABCDEFGHIST )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0180.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 1
METHOD
MODEL 1
M E 0.195
V E 0.178
G E 0.174
R B 0.269
R C 0.345
P H 0.201
G S 0.212
G C 0.204
G S 0.170
L E 0.216
K H 0.177
D E 0.206
T S 0.160
K B 0.353
P E 0.360
V E 0.410
V E 0.431
V E 0.364
R E 0.433
L E 0.271
Y B 0.391
P H 0.377
D H 0.476
E H 0.503
I H 0.530
E H 0.600
A H 0.569
L H 0.413
K H 0.332
S H 0.319
R S 0.219
V B 0.381
P B 0.271
A H 0.295
N S 0.265
T H 0.250
S H 0.338
M H 0.557
S H 0.727
A H 0.800
Y H 0.821
I H 0.807
R H 0.847
R H 0.816
I H 0.790
I H 0.714
L H 0.623
N H 0.389
H H 0.296
L H 0.283
E H 0.287
D H 0.175
D S 0.164
END