# List of top-scoring protein chains for t2k-100-30-dssp_ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1d2zA 108 2.60e-01 1d2zA a.77.1.1 18437 4xiaA 393 1.28e+00 4xis c.1.15.3 29439 1i7pA 274 1.35e+00 b.43.4.2 66048 c.25.1.1 66049 1g73C 121 1.46e+00 1g3fA g.52.1.1 45375 1ndh 272 1.53e+00 1ndh b.43.4.2 25662 c.25.1.1 31552 1g3fA 117 1.73e+00 1g3fA g.52.1.1 45378 1g2nA 264 1.95e+00 1lbd a.123.1.1 60227 1qqfA 277 2.18e+00 1c3d a.102.4.4 18875 1ayx 492 2.61e+00 1ayx a.102.1.1 18825 1pls 113 4.42e+00 1pls b.55.1.1 26965 1gtqA 140 6.53e+00 1b66A d.96.1.2 40661 1qqyA 130 6.58e+00 3lzt d.2.1.2 36586 1b66A 140 7.19e+00 1b66A d.96.1.2 40657 1reqB 637 7.98e+00 1reqB c.1.19.1 29621 c.23.6.1 31248 1bzg 34 8.24e+00 1bzg j.15.1.1 46166 1l5jA 865 9.58e+00 1aj8A 371 9.60e+00 1aj8A a.103.1.1 18900 1lc0A 294 1.02e+01 1ggwA 140 1.03e+01 1ggwA a.39.1.5 60490 1ayoA 130 1.09e+01 1ayoA b.2.4.1 22431 1d2nA 272 1.10e+01 1d2nA c.37.1.13 32428 1reqD 637 1.14e+01 1reqB c.1.19.1 29623 c.23.6.1 31250 1nsf 273 1.22e+01 1d2nA c.37.1.13 32429 1acf 125 1.27e+01 3nul d.110.1.1 40882 1prxA 224 1.63e+01 1prxA c.47.1.10 33076 1pytA 94 1.68e+01 1pytA d.58.3.1 39064 1jj2M 186 1.75e+01 1ffkK c.55.4.1 63098 1ezvD 245 1.77e+01 1be3D a.3.1.3 59546 f.2.1.8 59547 1fohA 664 1.77e+01 1fohA c.3.1.2 30381 c.47.1.10 33078 d.16.1.2 37900 1f89A 291 1.79e+01 d.160.1.1 64988 1ncs 47 1.79e+01 1ncs g.37.1.1 45040 1jj2R 84 1.80e+01 1ffkP d.12.1.1 63103 1jhgA 101 1.81e+01 1jhgA a.107.1.1 19009 1eiwA 111 1.82e+01 1eiwA c.23.3.1 31130 1irqA 71 1.85e+01 a.43.1.2 66297 1byqA 228 1.87e+01 1yer d.122.1.1 41100 1ko9A 345 1.88e+01 a.96.1.3 68717 d.129.1.2 68718 1jljA 189 1.94e+01 c.57.1.1 63169 1ct9A 553 1.97e+01 1ct9A c.26.2.1 31616 d.153.1.1 41834 1gcuA 295 2.01e+01 1gcuA c.2.1.3 30063 d.81.1.4 39978 1pmy 123 2.05e+01 1bqk b.6.1.1 22888 1yer 228 2.10e+01 1yer d.122.1.1 41101 1g291 372 2.13e+01 1g291 1qlnA 883 2.19e+01 1cezA e.8.1.3 43111 1cezA 883 2.21e+01 1cezA e.8.1.3 43110 1a49A 530 2.23e+01 1a49A b.58.1.1 27026 c.1.12.1 29255 c.49.1.1 33109 1hqz9 141 2.24e+01 2wrpR 107 2.29e+01 1jhgA a.107.1.1 19010 1kwhA 492 2.35e+01 c.94.1.1 68876 1trrA 107 2.36e+01 1jhgA a.107.1.1 19017 1ed5A 444 2.38e+01 1nseA d.174.1.1 42530 1d0cA 444 2.42e+01 d.174.1.1 64769 1pkn 530 2.42e+01 1a49A b.58.1.1 27042 c.1.12.1 29271 c.49.1.1 33125 1nseA 444 2.43e+01 1nseA d.174.1.1 42534 1d1vA 444 2.45e+01 1nseA d.174.1.1 59101 1jli 112 2.51e+01 1jli a.26.1.2 16884 1ihcA 188 2.54e+01 1di6A c.57.1.1 62379 1gp1A 198 2.63e+01 1gp1A c.47.1.10 33059 1ebmA 317 2.64e+01 1ebmA a.96.1.3 18751 d.129.1.2 41300 1c3d 294 2.71e+01 1c3d a.102.4.4 18874 1kp9B 287 2.85e+01 c.66.1.18 68734 1h2aS 317 2.92e+01 2frvA e.19.1.1 43311 1bqk 124 2.99e+01 1bqk b.6.1.1 22889 1xo1A 291 3.04e+01 1exnA a.60.7.1 18086 c.53.1.2 33356 1pcfA 66 3.04e+01 1pcfA d.18.1.1 38142 1f28A 297 3.13e+01 1bkpA d.117.1.1 59608 1hqz1 141 3.19e+01 1a6q 382 3.21e+01 1a6q d.158.1.1 42063 1e9mA 106 3.22e+01 1ayfA d.15.4.1 59397 1ffkK 186 3.35e+01 1ffkK c.55.4.1 33731 1lghB 45 3.46e+01 1lghB f.3.1.1 43734 1k1gA 131 3.48e+01 d.51.1.1 68015 1ft1A 377 3.49e+01 1ft1A a.118.6.1 19186 1jcqA 382 3.57e+01 a.118.6.1 66504 1ld8A 382 3.57e+01 1vqb 87 3.64e+01 1gvp b.40.4.7 25370 1gvp 87 3.70e+01 1gvp b.40.4.7 25369 1exnA 290 3.97e+01 1exnA a.60.7.1 18088 c.53.1.2 33358 1qbqA 333 3.98e+01 1ft1A a.118.6.1 19187